Guide to the Human Genome
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Name: PDPK1 Sequence: fasta or formatted (556aa) NCBI GI: 4505695
Description:

3-phosphoinositide dependent protein kinase-1 isoform 1

Referenced in:

Inositol Pathways

Other entries for this name:
alt prot [429aa] 3-phosphoinositide dependent protein kinase-1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         33           2
 C cysteine            1.6          9           1
 D aspartate           5.0         28           2
 E glutamate           7.4         41           2
 F phenylalanine       4.9         27           2
 G glycine             6.1         34           2
 H histidine           2.7         15           1
 I isoleucine          4.5         25           2
 K lysine              6.8         38           2
 L leucine            10.1         56           3
 M methionine          1.8         10           1
 N asparagine          3.2         18           2
 P proline             6.8         38           3
 Q glutamine           5.0         28           2
 R arginine            5.4         30           3
 S serine              7.9         44           6
 T threonine           4.7         26           2
 V valine              4.9         27           2
 W tryptophan          1.1          6           1
 Y tyrosine            4.1         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   3-phosphoinositide dependent protein kinase-1 isoform... 
LOC100293250          0.643   PREDICTED: similar to 3-phosphoinositide dependent ...
LOC100287510          0.616   PREDICTED: hypothetical protein XP_002343452 
PDPK1                 0.574   3-phosphoinositide dependent protein kinase-1 isofor...
SGK1                  0.172   serum/glucocorticoid regulated kinase 1 isoform 1 [H...
SGK1                  0.172   serum/glucocorticoid regulated kinase 1 isoform 4 [...
SGK1                  0.172   serum/glucocorticoid regulated kinase 1 isoform 3 [...
SGK1                  0.172   serum/glucocorticoid regulated kinase 1 isoform 2 [...
PRKACB                0.170   cAMP-dependent protein kinase catalytic subunit beta ...
PRKACB                0.170   cAMP-dependent protein kinase catalytic subunit beta...
PRKX                  0.170   protein kinase, X-linked 
PRKACA                0.167   cAMP-dependent protein kinase catalytic subunit alph...
PRKACA                0.167   cAMP-dependent protein kinase catalytic subunit alpha...
PRKACG                0.164   protein kinase, cAMP-dependent, catalytic, gamma [Ho...
AKT2                  0.159   AKT2 kinase 
RPS6KB1               0.158   ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Ho...
SGK2                  0.158   serum/glucocorticoid regulated kinase 2 isoform beta...
SGK2                  0.156   serum/glucocorticoid regulated kinase 2 isoform alph...
SGK3                  0.154   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.154   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
AKT3                  0.154   AKT3 kinase isoform 1 
AKT3                  0.154   AKT3 kinase isoform 2 
AKT1                  0.154   AKT1 kinase 
AKT1                  0.154   AKT1 kinase 
AKT1                  0.154   AKT1 kinase 
PRKCQ                 0.152   protein kinase C, theta 
PRKCA                 0.150   protein kinase C, alpha 
PRKCH                 0.149   protein kinase C, eta 
RPS6KA3               0.149   ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Ho...
PRKCE                 0.149   protein kinase C, epsilon 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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