Guide to the Human Genome
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Name: LOC100293130 Sequence: fasta or formatted (573aa) NCBI GI: 239752951
Description:

PREDICTED: similar to kruppel-related zinc finger protein hcKrox isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {539aa} PREDICTED: similar to kruppel-related zinc finger protein hcKrox ...
alt prot {539aa} PREDICTED: similar to kruppel-related zinc finger protein hcKrox ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         56           3
 C cysteine            2.8         16           1
 D aspartate           4.9         28           3
 E glutamate           8.4         48           6
 F phenylalanine       2.3         13           1
 G glycine             9.4         54           4
 H histidine           4.4         25           1
 I isoleucine          1.7         10           2
 K lysine              3.3         19           2
 L leucine             8.9         51           2
 M methionine          1.9         11           1
 N asparagine          1.6          9           1
 P proline            12.4         71           8
 Q glutamine           3.8         22           1
 R arginine            5.8         33           4
 S serine              6.8         39           2
 T threonine           5.1         29           2
 V valine              3.7         21           1
 W tryptophan          0.5          3           1
 Y tyrosine            2.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to kruppel-related zinc finger p... 
ZBTB7B                0.936   zinc finger and BTB domain containing 7B 
LOC100293130          0.936   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.936   PREDICTED: similar to kruppel-related zinc finger p...
ZBTB7C                0.264   zinc finger and BTB domain containing 7C 
ZBTB7A                0.254   zinc finger and BTB domain containing 7A 
BCL6B                 0.134   B-cell CLL/lymphoma 6, member B (zinc finger protein...
ZBTB17                0.117   zinc finger and BTB domain containing 17 
ZBTB24                0.097   zinc finger and BTB domain containing 24 
ZBTB42                0.091   zinc finger and BTB domain containing 42 
ZBTB16                0.090   promyelocytic leukemia zinc finger protein 
ZBTB16                0.090   promyelocytic leukemia zinc finger protein 
ZNF358                0.083   zinc finger protein 358 
ZNF628                0.082   zinc finger protein 628 
ZNF544                0.080   zinc finger protein 544 
ZNF559                0.079   zinc finger protein 559 
ZNF596                0.078   zinc finger protein 596 
ZNF596                0.078   zinc finger protein 596 
ZNF596                0.078   zinc finger protein 596 
ZFP28                 0.077   zinc finger protein 28 
ZNF177                0.077   zinc finger protein 177 
ZNF263                0.076   zinc finger protein 263 
ZNF473                0.076   zinc finger protein 473 
ZFP37                 0.076   zinc finger protein 37 homolog 
ZNF473                0.076   zinc finger protein 473 
ZKSCAN3               0.076   zinc finger with KRAB and SCAN domains 3 
ZSCAN21               0.076   zinc finger protein 38 
ZNF333                0.076   zinc finger protein 333 
ZNF643                0.076   zinc finger protein 643 
ZNF233                0.076   zinc finger protein 233 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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