Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293130 Sequence: fasta or formatted (539aa) NCBI GI: 239752947
Description:

PREDICTED: similar to kruppel-related zinc finger protein hcKrox isoform 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {539aa} PREDICTED: similar to kruppel-related zinc finger protein hcKrox ...
alt prot {573aa} PREDICTED: similar to kruppel-related zinc finger protein hcKrox ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         51           3
 C cysteine            3.0         16           1
 D aspartate           5.2         28           3
 E glutamate           8.3         45           6
 F phenylalanine       2.4         13           1
 G glycine             9.5         51           4
 H histidine           4.5         24           1
 I isoleucine          1.9         10           2
 K lysine              3.3         18           2
 L leucine             9.1         49           2
 M methionine          1.9         10           1
 N asparagine          1.7          9           1
 P proline            11.5         62           8
 Q glutamine           3.3         18           1
 R arginine            6.1         33           4
 S serine              6.7         36           2
 T threonine           5.4         29           2
 V valine              3.9         21           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.8         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to kruppel-related zinc finger p... 
ZBTB7B                1.000   zinc finger and BTB domain containing 7B 
LOC100293130          1.000   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          1.000   PREDICTED: similar to kruppel-related zinc finger p...
ZBTB7C                0.282   zinc finger and BTB domain containing 7C 
ZBTB7A                0.271   zinc finger and BTB domain containing 7A 
BCL6B                 0.143   B-cell CLL/lymphoma 6, member B (zinc finger protein...
ZBTB17                0.125   zinc finger and BTB domain containing 17 
ZBTB24                0.103   zinc finger and BTB domain containing 24 
ZBTB42                0.098   zinc finger and BTB domain containing 42 
ZBTB16                0.096   promyelocytic leukemia zinc finger protein 
ZBTB16                0.096   promyelocytic leukemia zinc finger protein 
ZNF358                0.089   zinc finger protein 358 
ZNF628                0.088   zinc finger protein 628 
ZNF544                0.085   zinc finger protein 544 
ZNF559                0.084   zinc finger protein 559 
ZNF596                0.083   zinc finger protein 596 
ZNF596                0.083   zinc finger protein 596 
ZNF596                0.083   zinc finger protein 596 
ZFP28                 0.082   zinc finger protein 28 
ZNF177                0.082   zinc finger protein 177 
ZNF263                0.081   zinc finger protein 263 
ZNF473                0.081   zinc finger protein 473 
ZFP37                 0.081   zinc finger protein 37 homolog 
ZNF473                0.081   zinc finger protein 473 
ZKSCAN3               0.081   zinc finger with KRAB and SCAN domains 3 
ZSCAN21               0.081   zinc finger protein 38 
ZNF333                0.081   zinc finger protein 333 
ZNF643                0.081   zinc finger protein 643 
ZNF233                0.081   zinc finger protein 233 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press