Guide to the Human Genome
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Name: PDPK1 Sequence: fasta or formatted (429aa) NCBI GI: 47680169
Description:

3-phosphoinositide dependent protein kinase-1 isoform 2

Referenced in:

Inositol Pathways

Other entries for this name:
alt prot [556aa] 3-phosphoinositide dependent protein kinase-1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         28           2
 C cysteine            1.9          8           1
 D aspartate           4.7         20           2
 E glutamate           7.0         30           2
 F phenylalanine       4.4         19           2
 G glycine             6.5         28           2
 H histidine           2.3         10           1
 I isoleucine          3.0         13           2
 K lysine              5.8         25           2
 L leucine            10.0         43           3
 M methionine          1.9          8           1
 N asparagine          3.3         14           2
 P proline             7.9         34           3
 Q glutamine           5.8         25           2
 R arginine            5.4         23           3
 S serine              8.9         38           6
 T threonine           4.7         20           2
 V valine              4.9         21           2
 W tryptophan          1.4          6           1
 Y tyrosine            3.7         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   3-phosphoinositide dependent protein kinase-1 isofor... 
PDPK1                 0.744   3-phosphoinositide dependent protein kinase-1 isoform...
LOC100293250          0.308   PREDICTED: similar to 3-phosphoinositide dependent ...
LOC100287510          0.308   PREDICTED: hypothetical protein XP_002343452 
PRKX                  0.078   protein kinase, X-linked 
MASTL                 0.076   microtubule associated serine/threonine kinase-like...
RPS6KB1               0.073   ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Ho...
PRKACB                0.070   cAMP-dependent protein kinase catalytic subunit beta ...
PRKACB                0.070   cAMP-dependent protein kinase catalytic subunit beta...
PRKACA                0.069   cAMP-dependent protein kinase catalytic subunit alph...
PRKACA                0.069   cAMP-dependent protein kinase catalytic subunit alpha...
GRK5                  0.069   G protein-coupled receptor kinase 5 
PRKCE                 0.068   protein kinase C, epsilon 
PRKACG                0.068   protein kinase, cAMP-dependent, catalytic, gamma [Ho...
SGK1                  0.065   serum/glucocorticoid regulated kinase 1 isoform 1 [H...
SGK1                  0.065   serum/glucocorticoid regulated kinase 1 isoform 4 [...
SGK1                  0.065   serum/glucocorticoid regulated kinase 1 isoform 3 [...
SGK1                  0.065   serum/glucocorticoid regulated kinase 1 isoform 2 [...
RPS6KA5               0.065   ribosomal protein S6 kinase, polypeptide 5 isoform b...
RPS6KA5               0.065   ribosomal protein S6 kinase, polypeptide 5 isoform a...
PKN2                  0.065   protein kinase N2 
PRKCA                 0.064   protein kinase C, alpha 
RPS6KB2               0.063   ribosomal protein S6 kinase, 70kDa, polypeptide 2 [H...
ADRBK2                0.063   beta-adrenergic receptor kinase 2 
PRKCI                 0.063   protein kinase C, iota 
PKN1                  0.063   protein kinase N1 isoform 1 
PKN1                  0.063   protein kinase N1 isoform 2 
PRKCB                 0.062   protein kinase C, beta isoform 2 
RPS6KA4               0.062   ribosomal protein S6 kinase, 90kDa, polypeptide 4 is...
RPS6KA4               0.062   ribosomal protein S6 kinase, 90kDa, polypeptide 4 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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