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Search of human proteins with 239750006
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750006 PREDICTED: hypothetical protein XP_002347235 [Homo
sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755528 PREDICTED: hypothetical protein [Homo sapiens] 175 8e-45
gi|239750006 PREDICTED: hypothetical protein XP_002347235 [Homo ... 175 8e-45
gi|239744317 PREDICTED: hypothetical protein XP_002343096 [Homo ... 175 8e-45
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|169206277 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|157738645 plexin A4 isoform 1 [Homo sapiens] 32 0.14
gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type ... 32 0.14
gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo ... 31 0.19
gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo ... 31 0.19
gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo ... 31 0.19
gi|169206560 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169205714 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] 30 0.32
gi|169162266 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239750117 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169161822 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169162655 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens] 30 0.41
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 30 0.41
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 0.41
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 29 0.71
gi|169201702 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|113422095 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|157785645 SPEG complex locus [Homo sapiens] 29 0.92
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 28 1.2
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 28 1.2
gi|239754361 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo ... 28 1.6
gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo ... 28 1.6
>gi|239755528 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 175 bits (443), Expect = 8e-45
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP 60
MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP
Sbjct: 1 MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP 60
Query: 61 LSRRPSAPQNSGPRMPVAREPS 82
LSRRPSAPQNSGPRMPVAREPS
Sbjct: 61 LSRRPSAPQNSGPRMPVAREPS 82
>gi|239750006 PREDICTED: hypothetical protein XP_002347235 [Homo
sapiens]
Length = 82
Score = 175 bits (443), Expect = 8e-45
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP 60
MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP
Sbjct: 1 MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP 60
Query: 61 LSRRPSAPQNSGPRMPVAREPS 82
LSRRPSAPQNSGPRMPVAREPS
Sbjct: 61 LSRRPSAPQNSGPRMPVAREPS 82
>gi|239744317 PREDICTED: hypothetical protein XP_002343096 [Homo
sapiens]
Length = 82
Score = 175 bits (443), Expect = 8e-45
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP 60
MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP
Sbjct: 1 MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP 60
Query: 61 LSRRPSAPQNSGPRMPVAREPS 82
LSRRPSAPQNSGPRMPVAREPS
Sbjct: 61 LSRRPSAPQNSGPRMPVAREPS 82
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 21 PSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHPLSRRPSA 67
P P LSPG+ + PG R L P PA + P + P +R PSA
Sbjct: 196 PPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPA-PPAARTPSA 241
>gi|169206277 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 2 VRGRVTVAGRPVE---GDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESR 58
+RG++ + P + G R P P+L P D T+L + P R
Sbjct: 64 LRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCAMD----TVLGGRSPHLERPPTVC----R 115
Query: 59 HPLSRRPSAPQNSGPRMPVA 78
HP+ RRP A Q GP P +
Sbjct: 116 HPVGRRPEAIQLPGPPSPAS 135
>gi|157738645 plexin A4 isoform 1 [Homo sapiens]
Length = 1894
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 1 MVRGRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP 60
+V G +A D NP G C +L A C PA A+GP+ +
Sbjct: 1051 IVSGNTPIAVWGTHLDLIQNPQIRAKHGGKEHINICEVLNATEMTCQAPALALGPDHQSD 1110
Query: 61 LSRRP 65
L+ RP
Sbjct: 1111 LTERP 1115
>gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type
motif 17 [Homo sapiens]
Length = 328
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 2 VRGRVTVAGRPVEGDRATNPSPFLS--PGVGRDPGHCTILRA--LLRNCPCPARAVGPES 57
VR ++ ++ RP A + L PG+G P HC++ R +L + P P G +
Sbjct: 4 VRVQLLLSRRPESVSFARSVCGLLGAGPGLGTWPIHCSLKRGRLVLSSRPFP----GASA 59
Query: 58 RHPLSRRPSAP---QNSGPRMPVAREPS 82
R PL R P P PR+P A P+
Sbjct: 60 RLPLQRPPFCPFAALEERPRVPGAELPT 87
>gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 23 PFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAREP 81
P +PG PGH T CP P GPE R P +R P+A + GP R P
Sbjct: 3 PSSTPG----PGHAT------ETCPAPP---GPE-RSPAARAPAAASSLGPVSTAGRAP 47
>gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 23 PFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAREP 81
P +PG PGH T CP P GPE R P +R P+A + GP R P
Sbjct: 3 PSSTPG----PGHAT------ETCPAPP---GPE-RSPAARAPAAASSLGPVSTAGRAP 47
>gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 23 PFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAREP 81
P +PG PGH T CP P GPE R P +R P+A + GP R P
Sbjct: 3 PSSTPG----PGHAT------ETCPAPP---GPE-RSPAARAPAAASSLGPVSTAGRAP 47
>gi|169206560 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 2 VRGRVTVAGRPVE---GDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESR 58
+RG++ + P + G R P P+L P D T+L + P R
Sbjct: 64 LRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMD----TVLGGRSPHLERPPTVC----R 115
Query: 59 HPLSRRPSAPQNSGPRMPVA 78
HP+ RRP A Q GP P +
Sbjct: 116 HPVGRRPEAIQLPGPPSPAS 135
>gi|169205714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 2 VRGRVTVAGRPVE---GDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESR 58
+RG++ + P + G R P P+L P D T+L + P R
Sbjct: 64 LRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMD----TVLGGRSPHLERPPTVC----R 115
Query: 59 HPLSRRPSAPQNSGPRMPVA 78
HP+ RRP A Q GP P +
Sbjct: 116 HPVGRRPEAIQLPGPPSPAS 135
>gi|4503041 corticotropin releasing hormone precursor [Homo
sapiens]
Length = 196
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 36 CTILRALLRNCPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAR 79
C RALL P P P+ PL PQ+ P+ P AR
Sbjct: 19 CPPCRALLSRGPVPGARQAPQHPQPLDFFQPPPQSEQPQQPQAR 62
>gi|169162266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 4 GRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHPLSR 63
GR AG RA PSP+LSPG G LLR+ P+RA G + P +
Sbjct: 221 GRGACAGASAN-HRAGLPSPYLSPGRG----------LLLRSQKSPSRAGGAAAAGPQAG 269
Query: 64 RPSAPQNSGPRM 75
P+ S R+
Sbjct: 270 PPTVEVESDYRV 281
>gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 13 VEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHP----LSRRPSAP 68
+EG +P P +SP R T+L A +CPCP ++ P S+ +R P A
Sbjct: 241 LEGQLKRHPCPLMSPWRPR----VTLLEA--PSCPCPTASIVPFSQSQELVRAARTPPAQ 294
Query: 69 QNSGPRMPVAREPS 82
G +P A S
Sbjct: 295 DARGWALPAAMTTS 308
>gi|169161822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 4 GRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHPLSR 63
GR AG RA PSP+LSPG G LLR+ P+RA G + P +
Sbjct: 221 GRGACAGASAN-HRAGLPSPYLSPGRG----------LLLRSQKSPSRAGGAAAAGPQAG 269
Query: 64 RPSAPQNSGPRM 75
P+ S R+
Sbjct: 270 PPTVEVESDYRV 281
>gi|169162655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 4 GRVTVAGRPVEGDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRHPLSR 63
GR AG RA PSP+LSPG G LLR+ P+RA G + P +
Sbjct: 221 GRGACAGASAN-HRAGLPSPYLSPGRG----------LLLRSQKSPSRAGGAAAAGPQAG 269
Query: 64 RPSAPQNSGPRM 75
P+ S R+
Sbjct: 270 PPTVEVESDYRV 281
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 11 RPVEGDRATNPSPFLSPGVGRDPG 34
RP DR P P SPG GR PG
Sbjct: 102 RPSSADRPLAPGPSSSPGAGRAPG 125
>gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 915
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 22 SPFLSPGVGRDPGHCTILRALL--RNCPCPARAVG---PESRHPLSRRPSAPQ 69
S FL+ G CT L AL R CPC G P+ H LSR P PQ
Sbjct: 585 SSFLAQG-------CTPLTALQCGRECPCGRLCRGLKAPQKLHSLSRSPGLPQ 630
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 11 RPVEGDRATNPSPFLSPGVGRDPG 34
RP DR P P SPG GR PG
Sbjct: 205 RPSSADRPLAPGPSSSPGAGRAPG 228
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 50 ARAVGPESRHPLSRRPSAPQNSGPRMPVAREPS 82
AR+ P RH S RP APQ S PV R S
Sbjct: 673 ARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGAS 705
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 44 RNCPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAR 79
R P P R P R P R P P++ R PV R
Sbjct: 312 RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRR 347
>gi|62945417 dystrophia myotonica-containing WD repeat motif
protein [Homo sapiens]
Length = 674
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 47 PCPARAVGPESRHPLSRRPSAPQNSGPRMPVAR 79
P PA A GP + P S P A GP +P R
Sbjct: 63 PGPASASGPGAAGPASSPPPAGPGPGPALPAVR 95
>gi|169201702 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 28.9 bits (63), Expect = 0.92
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 46 CPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAR 79
C P G +SR P S R +AP GPR AR
Sbjct: 10 CASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGAR 43
>gi|113422095 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 28.9 bits (63), Expect = 0.92
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 46 CPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAR 79
C P G +SR P S R +AP GPR AR
Sbjct: 10 CASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGAR 43
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 39 LRALLRNCPCPARAVGPESRHPLSRRPSAPQNSGPRMPVAREP 81
LRA L+ P P P PL RPS P+ S P A +P
Sbjct: 517 LRATLQRAPSPREPGEP----PLFSRPSTPKTSRAVSPAAAQP 555
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 3 RGRVTVAGRPVE------GDRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPE 56
RGR AG P+E G R SP LS P PAR P+
Sbjct: 2139 RGRHRRAGAPLEIPVARLGARRLQESPSLSALSEAQPSS-------------PARPSAPK 2185
Query: 57 SRHPLSRRPSAPQNSGPRMPVAREPS 82
P S PSA S P A +P+
Sbjct: 2186 PSTPKSAEPSATTPSDAPQPPAPQPA 2211
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 1 MVRGRVTVAGRPVEG-DRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRH 59
+V+ + T RP++G D+A + SP L HCT R + + P PARA S+
Sbjct: 251 LVQQKPTAYVRPMDGQDQAPDESPKLKSS-SETSVHCTSYRGVPASKPEPARAKAKLSKF 309
Query: 60 PLSRR 64
+ ++
Sbjct: 310 SIPKQ 314
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 1 MVRGRVTVAGRPVEG-DRATNPSPFLSPGVGRDPGHCTILRALLRNCPCPARAVGPESRH 59
+V+ + T RP++G D+A + SP L HCT R + + P PARA S+
Sbjct: 226 LVQQKPTAYVRPMDGQDQAPDESPKLKSS-SETSVHCTSYRGVPASKPEPARAKAKLSKF 284
Query: 60 PLSRR 64
+ ++
Sbjct: 285 SIPKQ 289
>gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 11 RPVEGDRATNPSPFLSPGVGRDPGHCTILRALLR-NCPCPARAVGPESRHPLSRR 64
RPV G A +PG R PG R+ LR N PAR + P S HP R
Sbjct: 67 RPVPGSPAAVAP---APGAAR-PGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSR 117
>gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo
sapiens]
Length = 165
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 11 RPVEGDRATNPSPFLSPGVGRDPGHCTILRALLR-NCPCPARAVGPESRHPLSRR 64
RPV G A +PG R PG R+ LR N PAR + P S HP R
Sbjct: 67 RPVPGSPAAVAP---APGAAR-PGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSR 117
>gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo
sapiens]
Length = 165
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 11 RPVEGDRATNPSPFLSPGVGRDPGHCTILRALLR-NCPCPARAVGPESRHPLSRR 64
RPV G A +PG R PG R+ LR N PAR + P S HP R
Sbjct: 67 RPVPGSPAAVAP---APGAAR-PGAAAPRRSRLRRNSTSPARPLRPPSSHPAPSR 117
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,417,646
Number of Sequences: 37866
Number of extensions: 246662
Number of successful extensions: 1071
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 99
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.