Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131435 Sequence: fasta or formatted (148aa) NCBI GI: 169206277
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {148aa} PREDICTED: hypothetical protein
alt prot {148aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         11           1
 C cysteine            2.0          3           1
 D aspartate           0.7          1           1
 E glutamate           3.4          5           1
 F phenylalanine       5.4          8           1
 G glycine            10.1         15           2
 H histidine           2.0          3           1
 I isoleucine          2.0          3           1
 K lysine              2.0          3           1
 L leucine             7.4         11           2
 M methionine          1.4          2           1
 N asparagine          0.0          0           0
 P proline            17.6         26           2
 Q glutamine           3.4          5           1
 R arginine           12.8         19           2
 S serine              8.1         12           2
 T threonine           6.8         10           3
 V valine              3.4          5           1
 W tryptophan          2.0          3           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131435          0.993   PREDICTED: hypothetical protein 
LOC100131435          0.993   PREDICTED: hypothetical protein 
LOC100291479          0.051   PREDICTED: hypothetical protein XP_002348186 
VPS37C                0.047   vacuolar protein sorting 37C 
MLL2                  0.044   myeloid/lymphoid or mixed-lineage leukemia 2 
SMARCC1               0.041   SWI/SNF-related matrix-associated actin-dependent r...
LOC100288699          0.034   PREDICTED: hypothetical protein XP_002343846 
CPSF6                 0.034   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
LOC729189             0.031   PREDICTED: hypothetical protein 
LOC728744             0.031   PREDICTED: hypothetical protein 
TENC1                 0.031   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.031   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.031   tensin like C1 domain containing phosphatase isoform...
UTF1                  0.027   undifferentiated embryonic cell transcription factor...
FAM120C               0.027   hypothetical protein LOC54954 
ARHGEF15              0.027   Rho guanine exchange factor 15 
IER5L                 0.027   immediate early response 5-like 
KDM6B                 0.027   lysine (K)-specific demethylase 6B 
ACR                   0.027   acrosin precursor 
CD248                 0.024   tumor endothelial marker 1 precursor 
FMN1                  0.024   formin 1 
LOC100292466          0.024   PREDICTED: hypothetical protein 
LOC100289816          0.024   PREDICTED: hypothetical protein XP_002347235 
LOC100289633          0.024   PREDICTED: hypothetical protein XP_002343096 
GLTSCR1               0.024   glioma tumor suppressor candidate region gene 1 [Ho...
LOC100131102          0.024   PREDICTED: hypothetical protein 
C6orf132              0.024   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.024   PREDICTED: chromosome 6 open reading frame 132 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press