Guide to the Human Genome
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Name: LOC100128071 Sequence: fasta or formatted (127aa) NCBI GI: 169160607
Description:

PREDICTED: hypothetical protein LOC100128071

Not currently referenced in the text

Other entries for this name:
alt mRNA {127aa} PREDICTED: hypothetical protein LOC100128071
alt mRNA {127aa} PREDICTED: hypothetical protein LOC100128071
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.7         20           3
 C cysteine            3.1          4           1
 D aspartate           3.1          4           1
 E glutamate           5.5          7           1
 F phenylalanine       0.8          1           1
 G glycine             9.4         12           2
 H histidine           3.1          4           1
 I isoleucine          1.6          2           1
 K lysine              0.0          0           0
 L leucine             7.1          9           2
 M methionine          2.4          3           1
 N asparagine          0.8          1           1
 P proline            16.5         21           2
 Q glutamine           2.4          3           1
 R arginine            9.4         12           2
 S serine              8.7         11           2
 T threonine           5.5          7           1
 V valine              3.9          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100128071 
LOC100128071          1.000   PREDICTED: hypothetical protein LOC100128071 
LOC100128071          1.000   PREDICTED: hypothetical protein LOC100128071 
C6orf225              0.138   hypothetical protein LOC619208 
PCLO                  0.067   piccolo isoform 2 
PCLO                  0.067   piccolo isoform 1 
MAP1A                 0.062   microtubule-associated protein 1A 
DGKI                  0.054   diacylglycerol kinase, iota 
HCN2                  0.050   hyperpolarization activated cyclic nucleotide-gated...
USP42                 0.050   ubiquitin specific peptidase 42 
LOC389813             0.050   similar to CG15216-PA 
TFE3                  0.050   transcription factor E3 
SYN1                  0.050   synapsin I isoform Ia 
SYN1                  0.050   synapsin I isoform Ib 
CASKIN1               0.050   CASK interacting protein 1 
PSD                   0.050   pleckstrin and Sec7 domain containing 
LOC100127891          0.046   PREDICTED: similar to hCG2042508 
LOC100127891          0.046   PREDICTED: similar to hCG2042508 
LOC100127891          0.046   PREDICTED: similar to hCG2042508 
MYO1F                 0.046   myosin IF 
EMILIN2               0.046   elastin microfibril interfacer 2 
ZNF746                0.046   zinc finger protein 746 
LOC651856             0.046   PREDICTED: similar to hCG2023245 
SRCAP                 0.042   Snf2-related CBP activator protein 
SMARCC2               0.042   SWI/SNF-related matrix-associated actin-dependent re...
BZRAP1                0.042   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.042   peripheral benzodiazepine receptor-associated prote...
SAMD1                 0.042   sterile alpha motif domain containing 1 
COL5A1                0.042   alpha 1 type V collagen preproprotein 
EIF3F                 0.042   eukaryotic translation initiation factor 3, subunit 5...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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