Guide to the Human Genome
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Name: PLXNA4 Sequence: fasta or formatted (1894aa) NCBI GI: 157738645
Description:

plexin A4 isoform 1

Referenced in:

Semaphorins

Other entries for this name:
alt prot [522aa] plexin A4 isoform 2
alt prot [492aa] plexin A4 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         96           2
 C cysteine            3.1         59           1
 D aspartate           5.3        101           3
 E glutamate           6.2        118           2
 F phenylalanine       3.6         69           1
 G glycine             6.1        115           2
 H histidine           2.5         48           2
 I isoleucine          5.4        103           2
 K lysine              6.1        116           2
 L leucine             9.9        188           3
 M methionine          2.7         51           1
 N asparagine          4.4         84           2
 P proline             5.3        101           2
 Q glutamine           4.2         79           2
 R arginine            4.7         89           2
 S serine              7.6        144           3
 T threonine           5.5        105           3
 V valine              7.7        145           3
 W tryptophan          0.9         17           1
 Y tyrosine            3.5         66           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin A4 isoform 1 
PLXNA2                0.677   plexin A2 
PLXNA1                0.632   plexin A1 
PLXNA3                0.597   plexin A3 
PLXNB2                0.238   plexin B2 
PLXNA4                0.237   plexin A4 isoform 2 
PLXNA4                0.236   plexin A4 isoform 3 
PLXNB3                0.236   plexin B3 isoform 2 
PLXNB3                0.236   plexin B3 isoform 1 
PLXND1                0.225   plexin D1 
PLXNB1                0.201   plexin B1 
PLXNB1                0.201   plexin B1 
PLXNC1                0.104   plexin C1 
MET                   0.034   met proto-oncogene isoform b precursor 
MET                   0.034   met proto-oncogene isoform a precursor 
MST1R                 0.020   macrophage stimulating 1 receptor precursor 
SEMA4B                0.017   semaphorin 4B precursor 
SEMA4B                0.017   semaphorin 4B precursor 
SEMA5B                0.014   semaphorin 5B isoform 1 
SEMA5A                0.013   semaphorin 5A 
SEMA4A                0.012   semaphorin B 
PKHD1L1               0.011   fibrocystin L 
SEMA4C                0.009   semaphorin 4C 
SEMA6B                0.009   semaphorin 6B precursor 
SEMA6D                0.008   semaphorin 6D isoform 1 precursor 
SEMA6D                0.008   semaphorin 6D isoform 5 precursor 
SEMA6D                0.008   semaphorin 6D isoform 4 precursor 
SEMA6D                0.008   semaphorin 6D isoform 3 precursor 
SEMA6D                0.008   semaphorin 6D isoform 2 precursor 
SEMA3F                0.008   semaphorin 3F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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