Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131311 Sequence: fasta or formatted (295aa) NCBI GI: 169162655
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {295aa} PREDICTED: hypothetical protein
alt mRNA {295aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         29           4
 C cysteine            2.4          7           1
 D aspartate           2.7          8           1
 E glutamate           2.7          8           1
 F phenylalanine       3.4         10           1
 G glycine             9.8         29           3
 H histidine           1.4          4           1
 I isoleucine          3.4         10           2
 K lysine              3.7         11           1
 L leucine             7.5         22           3
 M methionine          2.4          7           2
 N asparagine          1.7          5           1
 P proline             9.2         27           4
 Q glutamine           2.0          6           1
 R arginine            8.8         26           2
 S serine             16.6         49           6
 T threonine           4.7         14           1
 V valine              4.7         14           1
 W tryptophan          1.0          3           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131311          1.000   PREDICTED: hypothetical protein 
LOC100131311          1.000   PREDICTED: hypothetical protein 
SP8                   0.037   Sp8 transcription factor isoform 1 
SP8                   0.037   Sp8 transcription factor isoform 2 
CDSN                  0.037   corneodesmosin precursor 
KRT76                 0.032   keratin 76 
MUC21                 0.030   mucin 21 
FAM48B1               0.030   hypothetical protein LOC100130302 
FOXC1                 0.028   forkhead box C1 
INPP5J                0.028   phosphatidylinositol (4,5) bisphosphate 5-phosphatas...
SRRM2                 0.026   splicing coactivator subunit SRm300 
LOC100129036          0.026   PREDICTED: hypothetical protein 
WEE1                  0.026   WEE1 tyrosine kinase isoform 1 
HOXD13                0.026   homeobox D13 
LOC100291061          0.025   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.025   PREDICTED: hypothetical protein XP_002343855 
TNRC18                0.025   trinucleotide repeat containing 18 
KRT2                  0.025   keratin 2 
HECA                  0.023   headcase 
LOR                   0.021   loricrin 
RLIM                  0.021   ring finger protein, LIM domain interacting 
RLIM                  0.021   ring finger protein, LIM domain interacting 
HOXA10                0.021   homeobox A10 isoform a 
CACNA1B               0.021   calcium channel, voltage-dependent, N type, alpha 1B ...
SFRS16                0.021   splicing factor, arginine/serine-rich 16 
IRS4                  0.021   insulin receptor substrate 4 
AGAP2                 0.021   centaurin, gamma 1 isoform PIKE-L 
PGR                   0.021   progesterone receptor 
EOMES                 0.021   eomesodermin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press