Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: REPIN1 Sequence: fasta or formatted (567aa) NCBI GI: 153791994
Description:

replication initiator 1 isoform 1

Referenced in:

Replication Proteins
Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [567aa] replication initiator 1 isoform 1
alt mRNA [567aa] replication initiator 1 isoform 1
alt prot [624aa] replication initiator 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         61           3
 C cysteine            6.2         35           2
 D aspartate           3.0         17           2
 E glutamate           5.1         29           2
 F phenylalanine       4.2         24           1
 G glycine             7.4         42           2
 H histidine           7.2         41           1
 I isoleucine          1.9         11           1
 K lysine              4.9         28           2
 L leucine             6.9         39           2
 M methionine          0.4          2           1
 N asparagine          1.2          7           1
 P proline            10.2         58           3
 Q glutamine           4.8         27           2
 R arginine           12.3         70           2
 S serine              5.3         30           1
 T threonine           3.0         17           1
 V valine              3.2         18           1
 W tryptophan          0.9          5           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   replication initiator 1 isoform 1 
REPIN1                1.000   replication initiator 1 isoform 1 
REPIN1                1.000   replication initiator 1 isoform 1 
REPIN1                1.000   replication initiator 1 isoform 3 
ZNF814                0.286   zinc finger protein 814 
ZNF135                0.278   zinc finger protein 135 
ZNF268                0.276   zinc finger protein 268 
ZNF234                0.274   zinc finger protein 234 
ZNF234                0.274   zinc finger protein 234 
ZNF226                0.267   zinc finger protein 226 isoform a 
ZNF226                0.267   zinc finger protein 226 isoform a 
ZNF761                0.267   zinc finger protein 761 
ZNF567                0.266   zinc finger protein 567 
ZNF229                0.264   zinc finger protein 229 
ZNF30                 0.263   zinc finger protein 30 isoform b 
ZNF30                 0.263   zinc finger protein 30 isoform a 
ZNF30                 0.263   zinc finger protein 30 isoform a 
ZNF615                0.263   zinc finger protein 615 
ZNF624                0.258   zinc finger protein 624 
ZNF189                0.258   zinc finger protein 189 isoform 2 
ZNF189                0.258   zinc finger protein 189 isoform 1 
ZNF607                0.258   zinc finger protein 607 
ZNF629                0.257   zinc finger protein 629 
ZNF227                0.257   zinc finger protein 227 
ZSCAN2                0.255   zinc finger protein 29 isoform 1 
ZNF224                0.254   zinc finger protein 224 
ZNF7                  0.254   zinc finger protein 7 
LOC388559             0.254   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.254   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.254   PREDICTED: hypothetical protein LOC388559 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press