Search of human proteins with 239749929

Search of human proteins with 239749929

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
         (153 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]           315   7e-87
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]           315   7e-87
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]           314   2e-86
gi|237757326 synaptojanin 1 isoform d [Homo sapiens]                   46   1e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        45   2e-05
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]            44   4e-05
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]            44   4e-05
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]             44   4e-05
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ...    44   7e-05
gi|13376335 hypothetical protein LOC79946 [Homo sapiens]               44   7e-05
gi|50428940 mediator complex subunit 25 [Homo sapiens]                 42   2e-04
gi|237757310 synaptojanin 1 isoform a [Homo sapiens]                   42   3e-04
gi|237757308 synaptojanin 1 isoform b [Homo sapiens]                   42   3e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    42   3e-04
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi...    42   3e-04
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi...    42   3e-04
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]           40   6e-04
gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isofor...    40   8e-04
gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isofor...    40   8e-04
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ...    40   8e-04
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ...    40   8e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    40   8e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    40   8e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    40   8e-04
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]       40   8e-04
gi|33286446 opioid growth factor receptor [Homo sapiens]               40   0.001
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    40   0.001
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom...    40   0.001
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap...    40   0.001
gi|150170670 piccolo isoform 2 [Homo sapiens]                          40   0.001

>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  315 bits (808), Expect = 7e-87
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP 60
           MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP
Sbjct: 1   MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP 60

Query: 61  ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH 120
           ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH
Sbjct: 61  ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH 120

Query: 121 SPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153
           SPAHERPSPASSAAASARTSRGDSGDPGPEAGA
Sbjct: 121 SPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153


>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  315 bits (808), Expect = 7e-87
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP 60
           MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP
Sbjct: 1   MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP 60

Query: 61  ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH 120
           ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH
Sbjct: 61  ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH 120

Query: 121 SPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153
           SPAHERPSPASSAAASARTSRGDSGDPGPEAGA
Sbjct: 121 SPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153


>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score =  314 bits (804), Expect = 2e-86
 Identities = 152/153 (99%), Positives = 152/153 (99%)

Query: 1   MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP 60
           MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRP SPRGASFSAEPRPRASLPPPRP
Sbjct: 1   MWLELRAGRAGRGPWIIRGASRPSGAESYSELLSSRPASPRGASFSAEPRPRASLPPPRP 60

Query: 61  ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH 120
           ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH
Sbjct: 61  ARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSH 120

Query: 121 SPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153
           SPAHERPSPASSAAASARTSRGDSGDPGPEAGA
Sbjct: 121 SPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153


>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
          Length = 1526

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 18   RGASRPSGAES-YSELLSSRPVSPRGASFSAEPRPRASLPPPRP-ARPSHLLWPKRLPGR 75
            R  SR  G  S  S  + ++P +P      A+P      PPPRP A P+    P+R P  
Sbjct: 1065 RAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPP 1124

Query: 76   PGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAA 135
             GR+    +A L  PG   P   + A   P+    AG+   P SH+ A        S + 
Sbjct: 1125 SGRSQPSPQAGLAGPG---PAGYSTAR--PTIPPRAGVISAPQSHARASAGRLTPESQSK 1179

Query: 136  SARTSRGDSGDPGP 149
            ++ TS+G +  P P
Sbjct: 1180 TSETSKGSTFLPEP 1193



 Score = 28.5 bits (62), Expect = 2.3
 Identities = 37/143 (25%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 21   SRPSGAESYSELLSSRPVSPRGASFSAEPR-------PRASLPPPRPARPSHLLWPKRLP 73
            +R S      E  S    + +G++F  EP        P++SLPPP   R    L P   P
Sbjct: 1165 ARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPP-AQRLQEPLVPVAAP 1223

Query: 74   GRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIA------GLRRRPVSHSPAHE-- 125
              P   P       P P  RS  + +      S  Q+       G R  P+   P  +  
Sbjct: 1224 -MPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQVKTNGISDGKRESPLKIDPFEDLS 1282

Query: 126  -RPSPASSAAASARTSRGDSGDP 147
                  S A  S +TS   + DP
Sbjct: 1283 FNLLAVSKAQLSVQTSPVPTPDP 1305


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 20   ASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGR- 78
            +S  S + S S   SS   S   +S S+     +S   P PA+P     PK  P  P + 
Sbjct: 2611 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPK--PASPKKP 2668

Query: 79   APGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASAR 138
             PG+RR+  P    R P          SY  +   RRRP S  P+      +SS   S R
Sbjct: 2669 PPGERRSRSP----RKPIDSLRDSRSLSYSPVE--RRRP-SPQPSPRDQQSSSSERGSRR 2721

Query: 139  TSRGDSGDP 147
              RGDS  P
Sbjct: 2722 GQRGDSRSP 2730



 Score = 35.4 bits (80), Expect = 0.019
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 18   RGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPG 77
            R +S  S + S S   SS   S   +  S+     +SLP     +P   L  KR+P  P 
Sbjct: 2531 RSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP----VQPEVAL--KRVPS-PT 2583

Query: 78   RAPGDR-RAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAAS 136
             AP +  R   PP  T +   R ++    S    +       S S +    S +SS+++S
Sbjct: 2584 PAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2643

Query: 137  ARTSRGDSGDPGPEA 151
            + +S      PGP+A
Sbjct: 2644 SSSSSPSPAKPGPQA 2658



 Score = 33.5 bits (75), Expect = 0.073
 Identities = 38/137 (27%), Positives = 47/137 (34%), Gaps = 7/137 (5%)

Query: 9   RAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLW 68
           R GR     RG S      +     S  P   RG S S  P  R S       R S    
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRSRTPTRRRSRSRT 608

Query: 69  PKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPS 128
           P R      R P  RR+      TRSP  R +    P+ +      R P     +  R +
Sbjct: 609 PARRGRSRSRTPARRRSR-----TRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSR-T 662

Query: 129 PASSAAASARTSRGDSG 145
           PA    + +RT    SG
Sbjct: 663 PARRGRSRSRTPARRSG 679



 Score = 31.2 bits (69), Expect = 0.36
 Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 3    LELRAGRAGRGPWII---RGASRP-SGAESYSELLSSRPVS-PRGASFSAEPRPRASLPP 57
            L  R  R+G  P +    R A R  SG++S  E  +  P + PR +   +  + R   P 
Sbjct: 1591 LSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPE 1650

Query: 58   PRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRP 117
               +  S    P+  P       G R +  P   +R+P  R ++   P   + A L RR 
Sbjct: 1651 GSSSTESS---PEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRS 1707

Query: 118  VSHS---------PAHERPSPASSAAASARTSR 141
             S S         P   R SP+ S+   A  SR
Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPEPAEKSR 1740



 Score = 30.8 bits (68), Expect = 0.47
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 7   AGRAGRG--PWIIRGAS---RPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPA 61
           +GR G G  P+   G +   RPS  E+ ++    +P SP       +    A+ P P P 
Sbjct: 300 SGRRGEGDAPFSEPGTTSTQRPSSPETATK----QPSSPYEDKDKDKKEKSATRPSPSPE 355

Query: 62  RPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAA----AELGPSYQQIA--GLRR 115
           R S    P+  P  P     +R    P P   +P ++      +E  P+  +       +
Sbjct: 356 RSS--TGPE--PPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEK 411

Query: 116 RPVSHSPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153
            P S S     PSP  +  +   +S  +S  P P  G+
Sbjct: 412 LPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGS 449



 Score = 30.0 bits (66), Expect = 0.81
 Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 8/154 (5%)

Query: 3   LELRAGRAGRGPWIIRGASRP---SGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPR 59
           L LR   +G  P   + +  P   S + S      SR    R  S S+ P  + S  P R
Sbjct: 773 LSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSR 832

Query: 60  PARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVS 119
            +  S    PK   G P R  G   +      + +P  R+  E  P  +  +   R P  
Sbjct: 833 QSHSSSSPHPKVKSGTPPR-QGSITSPQANEQSVTPQRRSCFESSPDPELKS---RTPSR 888

Query: 120 HSPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153
           HS +   P P   ++   R S   S  P P+  A
Sbjct: 889 HSCSGSSP-PRVKSSTPPRQSPSRSSSPQPKVKA 921



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 10/136 (7%)

Query: 12   RGPWIIRGASRP-----SGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHL 66
            R P I R  SR      S   S S    +R  S   AS  +  R R+  PP    R    
Sbjct: 1879 RTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSR 1938

Query: 67   LWPKRLPGRPGRAPGDRRAALP--PPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAH 124
                R   R    P  RR +    PP TR    R+ +   P  ++ +  R  PV+   + 
Sbjct: 1939 TPTTRRRSRSRTPPVTRRRSRSRTPPVTRR---RSRSRTSPITRRRSRSRTSPVTRRRSR 1995

Query: 125  ERPSPASSAAASARTS 140
             R SP +   + +RTS
Sbjct: 1996 SRTSPVTRRRSRSRTS 2011



 Score = 26.6 bits (57), Expect = 8.9
 Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 21/144 (14%)

Query: 18  RGASRPSGAESYSELLSSR--PVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGR 75
           R  S P   E   +  SS   P SP+    S         P P PA  SH    + +   
Sbjct: 401 RDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSH----REISSS 456

Query: 76  P-------GRAPGDRRAALPPP----GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAH 124
           P       GRA  D+  +  P      +RSP   A A+ G S  +    R    S SP  
Sbjct: 457 PTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP---ATAKRGRSRSRTPTKRGHSRSRSPQW 513

Query: 125 ERPSPASSAAAS-ARTSRGDSGDP 147
            R   A     S +   RG S  P
Sbjct: 514 RRSRSAQRWGRSRSPQRRGRSRSP 537


>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 45/146 (30%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query: 9   RAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLW 68
           R GRGP          G E++  L + R   PR AS S    PRA+L      +P     
Sbjct: 56  RCGRGP--AHSPDPGEGCEAWRRLSADR--WPRPASLS----PRAALASAPGQKPQ---- 103

Query: 69  PKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPS 128
               P R  + P       PPP  R   ++A      +  +  G+R    S  P    P 
Sbjct: 104 ----PARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACARAKGIRLVNPS-PPRPPEPI 158

Query: 129 PASSAAASARTSRG--DSGDPGPEAG 152
           PAS+A  S  T+RG   S  PGP+ G
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKG 184


>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 45/146 (30%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query: 9   RAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLW 68
           R GRGP          G E++  L + R   PR AS S    PRA+L      +P     
Sbjct: 56  RCGRGP--AHSPDPGEGCEAWRRLSADR--WPRPASLS----PRAALASAPGQKPQ---- 103

Query: 69  PKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPS 128
               P R  + P       PPP  R   ++A      +  +  G+R    S  P    P 
Sbjct: 104 ----PARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACARAKGIRLVNPS-PPRPPEPI 158

Query: 129 PASSAAASARTSRG--DSGDPGPEAG 152
           PAS+A  S  T+RG   S  PGP+ G
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKG 184


>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 45/146 (30%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query: 9   RAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLW 68
           R GRGP          G E++  L + R   PR AS S    PRA+L      +P     
Sbjct: 56  RCGRGP--AHSPDPGEGCEAWRRLSADR--WPRPASLS----PRAALASAPGQKPQ---- 103

Query: 69  PKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPS 128
               P R  + P       PPP  R   ++A      +  +  G+R    S  P    P 
Sbjct: 104 ----PARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACARAKGIRLVNPS-PPRPPEPI 158

Query: 129 PASSAAASARTSRG--DSGDPGPEAG 152
           PAS+A  S  T+RG   S  PGP+ G
Sbjct: 159 PASAAVTSGLTARGPNTSATPGPQKG 184


>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
           sapiens]
          Length = 278

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 39/114 (34%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 39  SPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFAR 98
           +P  ++ +A PRPR   PP   A PS    PKR P  P RAP     A P P      +R
Sbjct: 66  APAASAETALPRPRE--PPEPGAGPS----PKRSP--PPRAPRASSLAAPEPQVGDWTSR 117

Query: 99  AAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDPGPEAG 152
                GP    + G RRR  S S +     P + + A      G +   GPEAG
Sbjct: 118 EGRRGGPC---LPGARRRLFSLSVSRSSGPPRARSCAPHPAREGMATTRGPEAG 168


>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
          Length = 257

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 5/149 (3%)

Query: 7   AGRAGRGPWIIRGASRPSGAESYSEL--LSSRPVSPRGASFSAEPRPRASLPPPRPARPS 64
           A  AG G   +R + RP G  + S       RP  P G +    PRP A   PP  +R  
Sbjct: 85  ASAAGPGA-CMRASGRPHGNTTASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDC 143

Query: 65  HLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAH 124
               P+R P R GR  G R  A  P    + ++   A L       AG      + +PA 
Sbjct: 144 RCRRPRRWP-RAGRR-GRRAGACKPSCAGAAWSARGAPLCSYRTSCAGSCGARTAPTPAP 201

Query: 125 ERPSPASSAAASARTSRGDSGDPGPEAGA 153
              SP+++A++  R  R  S      +GA
Sbjct: 202 TCASPSAAASSCCRRRRACSSPTTAWSGA 230


>gi|50428940 mediator complex subunit 25 [Homo sapiens]
          Length = 747

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 9/145 (6%)

Query: 16  IIRGASRPSGAESYSELLSSR------PVSPRGASFSAEPRPRASLPPPRPARPSHLLWP 69
           ++RG   P G  S    L S+      P +P GA+ SA P+      PP+   P +L   
Sbjct: 222 LVRGLVLPVGGGSAPGPLQSKQPVPLPPAAPSGATLSAAPQQPLPPVPPQYQVPGNLSAA 281

Query: 70  KRLPGRPGRAPGDRRAALPPP-GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPS 128
           +        A  +++A L P     +P  +AA  +GP + Q    +  P    P   +P 
Sbjct: 282 QVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPQLPP--GPPGAPKPP 339

Query: 129 PASSAAASARTSRGDSGDPGPEAGA 153
           PAS  +  +  + G    P  + GA
Sbjct: 340 PASQPSLVSTVAPGSGLAPTAQPGA 364



 Score = 28.9 bits (63), Expect = 1.8
 Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 22/106 (20%)

Query: 11  GRGPWIIRGASRPSGAESYSELLSSRPVSPR-----GASFS---------AEPRPRASLP 56
           G GP I+   +RPS       LL  RP  P+     GAS +         A+P P A   
Sbjct: 567 GLGP-ILEDQARPS-----QNLLQLRPPQPQPQGTVGASGATGQPQPQGTAQPPPGAPQG 620

Query: 57  PPRPARPSHLLWPKRLPGRPGRAPGDRRAAL--PPPGTRSPFARAA 100
           PP  A       P   P  PG  P  R   L  PPP T  P  +A+
Sbjct: 621 PPGAASGPPPPGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQAS 666


>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
          Length = 1612

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 39/136 (28%), Positives = 51/136 (37%), Gaps = 24/136 (17%)

Query: 18   RGASRPSGAES-YSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRP 76
            R  SR  G  S  S  + ++P +P      A+P      PPPRP  P     P R P  P
Sbjct: 1109 RAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAP-----PTR-PAPP 1162

Query: 77   GRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAAS 136
             R P       PP G RSP         P+ ++  G+   P       E  +P S    +
Sbjct: 1163 QRPP-------PPSGARSP--------APTRKEFGGIGAPPSPGVARREMEAPKS--PGT 1205

Query: 137  ARTSRGDSGDPGPEAG 152
             R        P P+AG
Sbjct: 1206 TRKDNIGRSQPSPQAG 1221



 Score = 28.5 bits (62), Expect = 2.3
 Identities = 37/143 (25%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 21   SRPSGAESYSELLSSRPVSPRGASFSAEPR-------PRASLPPPRPARPSHLLWPKRLP 73
            +R S      E  S    + +G++F  EP        P++SLPPP   R    L P   P
Sbjct: 1251 ARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPP-AQRLQEPLVPVAAP 1309

Query: 74   GRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIA------GLRRRPVSHSPAHE-- 125
              P   P       P P  RS  + +      S  Q+       G R  P+   P  +  
Sbjct: 1310 -MPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQVKTNGISDGKRESPLKIDPFEDLS 1368

Query: 126  -RPSPASSAAASARTSRGDSGDP 147
                  S A  S +TS   + DP
Sbjct: 1369 FNLLAVSKAQLSVQTSPVPTPDP 1391


>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
          Length = 1350

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 39/136 (28%), Positives = 51/136 (37%), Gaps = 24/136 (17%)

Query: 18   RGASRPSGAES-YSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRP 76
            R  SR  G  S  S  + ++P +P      A+P      PPPRP  P     P R P  P
Sbjct: 1109 RAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAP-----PTR-PAPP 1162

Query: 77   GRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAAS 136
             R P       PP G RSP         P+ ++  G+   P       E  +P S    +
Sbjct: 1163 QRPP-------PPSGARSP--------APTRKEFGGIGAPPSPGVARREMEAPKS--PGT 1205

Query: 137  ARTSRGDSGDPGPEAG 152
             R        P P+AG
Sbjct: 1206 TRKDNIGRSQPSPQAG 1221



 Score = 28.5 bits (62), Expect = 2.3
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 21   SRPSGAESYSELLSSRPVSPRGASFSAEPR-------PRASLPPPRPARPSHLLWPKRLP 73
            +R S      E  S    + +G++F  EP        P++SLPPP       L+      
Sbjct: 1251 ARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPM 1310

Query: 74   GRPGRAPGDRRAALPPPGTRSPFA-RAAAELGPSYQQIAG 112
             + G  P       PPP +RS  +  + A   P  +Q +G
Sbjct: 1311 PQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQQEQPSG 1350


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 49/161 (30%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 3   LELRAGRA---GRGPWIIRGASRPSGA------ESYSELLSSRPVSPRGASFSAEPRPRA 53
           L  RAG     G GP    G  +P+G          + LL+S   +    S      P A
Sbjct: 166 LAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSL-VNNGPAA 224

Query: 54  SLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGL 113
            LP P+PA P  ++   + P   G A     AA  PP   +P A AAA   P        
Sbjct: 225 LLPLPKPAAPGTVI---QTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAP--PPPPPAPAT 279

Query: 114 RRRPVSH--SPAHERPSPASSAAASARTSRGDSGDPGPEAG 152
             RP  H   P    P+    AAA    S G +  P P AG
Sbjct: 280 LARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320



 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 33/117 (28%)

Query: 37  PVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPF 96
           P +P   +  A   P A+ PPP PA P+ L  P   PG P   P     A+PPP      
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPPPA-PATLARP---PGHPA-GPPTAAPAVPPP------ 300

Query: 97  ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDPGPEAGA 153
             AAA+ G S                A   P+PA +A   A    G SG PGP A A
Sbjct: 301 --AAAQNGGS----------------AGAAPAPAPAAGGPA----GVSGQPGPGAAA 335



 Score = 38.9 bits (89), Expect = 0.002
 Identities = 52/159 (32%), Positives = 65/159 (40%), Gaps = 34/159 (21%)

Query: 4   ELRAGRAGR-GPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPAR 62
           E+RA  AG  G  ++ G+  P+GA        + P +P   +  A P P    PP   AR
Sbjct: 49  EVRAAAAGALGNHVVSGS--PAGAAG------AGPAAPAEGAPGAAPEP----PPAGRAR 96

Query: 63  PSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHS- 121
           P         P RPG  P   R  L P G   P    AA+L P  +  AG    PV  + 
Sbjct: 97  PGG-----GGPQRPG--PPSPRRPLVPAGPAPP----AAKLRPPPEGSAG-SCAPVPAAA 144

Query: 122 -------PAHERPS-PASSAAASARTSRGDSGDPGPEAG 152
                  PA   P+ PA  AA +AR   G    PGP  G
Sbjct: 145 AVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPG 183



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 7   AGRAGRGPWIIRGASRPSGAESYSELLSSRPVSP--------RGASFSAEPRPRASL--- 55
           AGRA  G     G  RP        L+ + P  P         G++ S  P P A+    
Sbjct: 92  AGRARPGGG---GPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAA 148

Query: 56  -PPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAE 102
            P P PA P+    P  L  R G  PG      P PG   P    AA+
Sbjct: 149 GPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQ 196



 Score = 33.5 bits (75), Expect = 0.073
 Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 21/125 (16%)

Query: 34  SSRPVSPRGASFSAEPRPRA--SLPPPRPARPSHLLWPKRLPGRP--------------- 76
           ++ P +P   S  A P P A  + PPP P  P+ L  P   P  P               
Sbjct: 246 AAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQN 305

Query: 77  ----GRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASS 132
               G AP    AA  P G        AA   P+    A   +R V  +P   +   AS 
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG 365

Query: 133 AAASA 137
            A++A
Sbjct: 366 PASTA 370



 Score = 26.6 bits (57), Expect = 8.9
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 7   AGRAGR-GPWIIRGASRPS-GAESYSELLSSRPVSPRGASFSAEPRPRASL---PPPRPA 61
           AG +G+ GP     A  P   AES   ++ + P + +  + S      AS+   P  + A
Sbjct: 323 AGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGA 382

Query: 62  RPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFA 97
            PS    P   PG P   P     A+    +R+P A
Sbjct: 383 LPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTA 418


>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
           sapiens]
          Length = 678

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 37/121 (30%), Positives = 43/121 (35%), Gaps = 16/121 (13%)

Query: 37  PVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPF 96
           P +PR        RP    PPP P RP     P   P  P  APG R     P   RS F
Sbjct: 82  PAAPRRRGSPERARPPPPPPPPAPPRP-----PPAAPSPPA-APGPRGGGASPGARRSDF 135

Query: 97  ARAAAELG-----PSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTS-----RGDSGD 146
            +               + AG R     HS    R  PA+  A S   S     + +SGD
Sbjct: 136 LQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKPKVESGD 195

Query: 147 P 147
           P
Sbjct: 196 P 196



 Score = 26.9 bits (58), Expect = 6.8
 Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 55  LPPPRPARPSHLLWPKRLPGRPGRAPGDRRAAL---------PPPGTRSPFARAAAELGP 105
           +P  R  R   +L  + +PG P   P    A +          PPG  S        L  
Sbjct: 25  VPGVRALRADSVLIIETVPGFPPAPPAPGAAQIRAAEVLVYGAPPGRVS-------RLLE 77

Query: 106 SYQQIAGLRRR---------PVSHSPAHERPSPASSAAASARTSRGDSGDPG 148
            +   A  RRR         P    PA  RP PA+ +  +A   RG    PG
Sbjct: 78  RFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGASPG 129


>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 37/121 (30%), Positives = 43/121 (35%), Gaps = 16/121 (13%)

Query: 37  PVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPF 96
           P +PR        RP    PPP P RP     P   P  P  APG R     P   RS F
Sbjct: 82  PAAPRRRGSPERARPPPPPPPPAPPRP-----PPAAPSPPA-APGPRGGGASPGARRSDF 135

Query: 97  ARAAAELG-----PSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTS-----RGDSGD 146
            +               + AG R     HS    R  PA+  A S   S     + +SGD
Sbjct: 136 LQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKPKVESGD 195

Query: 147 P 147
           P
Sbjct: 196 P 196



 Score = 26.9 bits (58), Expect = 6.8
 Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 25/112 (22%)

Query: 55  LPPPRPARPSHLLWPKRLPGRPGRAPGDRRAAL---------PPPGTRSPFARAAAELGP 105
           +P  R  R   +L  + +PG P   P    A +          PPG  S        L  
Sbjct: 25  VPGVRALRADSVLIIETVPGFPPAPPAPGAAQIRAAEVLVYGAPPGRVS-------RLLE 77

Query: 106 SYQQIAGLRRR---------PVSHSPAHERPSPASSAAASARTSRGDSGDPG 148
            +   A  RRR         P    PA  RP PA+ +  +A   RG    PG
Sbjct: 78  RFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGASPG 129


>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
          Length = 306

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 19/85 (22%)

Query: 7  AGRAGRGPWIIR----------GASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLP 56
          AG  G GP   R          G   P GA  Y   L S  + P       EP P     
Sbjct: 14 AGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEE 73

Query: 57 PPRPARPSHLLWPKRLPGRPGRAPG 81
          PPRP  P         PG PG  PG
Sbjct: 74 PPRPRAP---------PGAPGPGPG 89


>gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isoform B
           [Homo sapiens]
          Length = 336

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 44/112 (39%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 20  ASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRA 79
           AS   G   Y  LL   P  PR     + P     LPPP P R S L  P  L   PG  
Sbjct: 4   ASPAIGQRPYPLLLDPEP--PRYLQSLSGPE----LPPPPPDRSSRLCVPAPLSTAPGAR 57

Query: 80  PG--DRRAA---LPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHER 126
            G   RRAA   L PP   S   R A  L P  QQ   LRRRP +  P   R
Sbjct: 58  EGRSARRAARGNLEPPPRAS---RPARPLRPGLQQ--RLRRRPGAPRPRDVR 104


>gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isoform A
           [Homo sapiens]
          Length = 418

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 44/112 (39%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 20  ASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRA 79
           AS   G   Y  LL   P  PR     + P     LPPP P R S L  P  L   PG  
Sbjct: 4   ASPAIGQRPYPLLLDPEP--PRYLQSLSGPE----LPPPPPDRSSRLCVPAPLSTAPGAR 57

Query: 80  PG--DRRAA---LPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHER 126
            G   RRAA   L PP   S   R A  L P  QQ   LRRRP +  P   R
Sbjct: 58  EGRSARRAARGNLEPPPRAS---RPARPLRPGLQQ--RLRRRPGAPRPRDVR 104


>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
           sapiens]
          Length = 321

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 23/104 (22%)

Query: 60  PARPSHLLWPK--RLPGRPGRAP-----GDRR---AALPPPGTRSPFA------RAAAEL 103
           P      LW +  +L G PG AP     G  R   A LPP GT + F       RAA   
Sbjct: 192 PESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAALSC 251

Query: 104 GPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDP 147
           GPS+ + +G R R +       RP P S  A++ R+ R   G P
Sbjct: 252 GPSWGEDSGPRHREL-------RPDPDSRRASAERSPRCPPGSP 288



 Score = 35.8 bits (81), Expect = 0.015
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 6   RAGRAGRGPWIIRGASRPSGAESYSELLSS--RPVSPRGASFSAE--PRPRASLPPPRPA 61
           R G +GRG W+      P G E++  +L S  R     G S+  +  PR R   P P   
Sbjct: 215 RPGASGRGRWV-SAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSR 273

Query: 62  RPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAG 112
           R S    P+  PG P +A          PG R   AR AA LG +++ +AG
Sbjct: 274 RASAERSPRCPPGSPRKA---------GPGRRD--ARGAA-LGGAFRVLAG 312


>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
           sapiens]
          Length = 321

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 23/104 (22%)

Query: 60  PARPSHLLWPK--RLPGRPGRAP-----GDRR---AALPPPGTRSPFA------RAAAEL 103
           P      LW +  +L G PG AP     G  R   A LPP GT + F       RAA   
Sbjct: 192 PESLERALWAQSSQLAGGPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAALSC 251

Query: 104 GPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDP 147
           GPS+ + +G R R +       RP P S  A++ R+ R   G P
Sbjct: 252 GPSWGEDSGPRHREL-------RPDPDSRRASAERSPRCPPGSP 288



 Score = 35.8 bits (81), Expect = 0.015
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 6   RAGRAGRGPWIIRGASRPSGAESYSELLSS--RPVSPRGASFSAE--PRPRASLPPPRPA 61
           R G +GRG W+      P G E++  +L S  R     G S+  +  PR R   P P   
Sbjct: 215 RPGASGRGRWV-SAPLPPKGTETFFCVLPSALRAALSCGPSWGEDSGPRHRELRPDPDSR 273

Query: 62  RPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAG 112
           R S    P+  PG P +A          PG R   AR AA LG +++ +AG
Sbjct: 274 RASAERSPRCPPGSPRKA---------GPGRRD--ARGAA-LGGAFRVLAG 312


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 48/155 (30%), Positives = 55/155 (35%), Gaps = 34/155 (21%)

Query: 9   RAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPR-PRASLPPPRPARPSHLL 67
           R  RGP   RG   P GA   S          +G S    P  P      P P  P+   
Sbjct: 751 RGERGPTGPRGQRGPRGATGKS--------GAKGTSGGDGPHGPPGERGLPGPQGPNGFP 802

Query: 68  WPKRLPGRPGR-----APGDR-------RAALP-PPGTRSPFARAAAELGPSYQQIAGLR 114
            PK  PG PG+      PG R       +   P PPG   P   AA E GP      G R
Sbjct: 803 GPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGP-QGAAGETGP-----MGER 856

Query: 115 RRPVSHSPAHERPSPASSAAASARTSRGDSGDPGP 149
             P    P  E+  P ++         G  GDPGP
Sbjct: 857 GHPGPPGPPGEQGLPGTAG------KEGTKGDPGP 885



 Score = 34.7 bits (78), Expect = 0.033
 Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 30/122 (24%)

Query: 57  PPRPARPSHLLWPKRLPGRPGRA--PGDR----RAALP-------PPGT--RSPF----- 96
           PP P  P+ L+ P  + G PG    PG+R    RA LP       PPGT    PF     
Sbjct: 314 PPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSG 373

Query: 97  --------ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDPG 148
                   A   A+     QQ     R P        RP P     +     +G+SGD G
Sbjct: 374 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPG--LKGESGDLG 431

Query: 149 PE 150
           P+
Sbjct: 432 PQ 433



 Score = 30.4 bits (67), Expect = 0.62
 Identities = 42/152 (27%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 12  RGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPR--------PRASLPP-----P 58
           RG    +G   P G +   E      + PRG    + PR        P    PP      
Sbjct: 487 RGDTGAQGLPGPPGEDG--ERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMD 544

Query: 59  RPARPSHLLWPKRLPGRPGRAPGDRRAALP-PPGTRSPFARAAAELGPSYQQIAGLRRRP 117
            P  P   L P+  PG PG+        LP P G   P      E GP  Q   GL   P
Sbjct: 545 GPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH----GEKGP--QGKPGLPGMP 598

Query: 118 VSHSPAHERPSPASSAAASARTSRGDSGDPGP 149
            S  P      P        + ++G SG  GP
Sbjct: 599 GSDGPPGH---PGKEGPPGTKGNQGPSGPQGP 627


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 48/155 (30%), Positives = 55/155 (35%), Gaps = 34/155 (21%)

Query: 9   RAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPR-PRASLPPPRPARPSHLL 67
           R  RGP   RG   P GA   S          +G S    P  P      P P  P+   
Sbjct: 730 RGERGPTGPRGQRGPRGATGKS--------GAKGTSGGDGPHGPPGERGLPGPQGPNGFP 781

Query: 68  WPKRLPGRPGR-----APGDR-------RAALP-PPGTRSPFARAAAELGPSYQQIAGLR 114
            PK  PG PG+      PG R       +   P PPG   P   AA E GP      G R
Sbjct: 782 GPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGP-QGAAGETGP-----MGER 835

Query: 115 RRPVSHSPAHERPSPASSAAASARTSRGDSGDPGP 149
             P    P  E+  P ++         G  GDPGP
Sbjct: 836 GHPGPPGPPGEQGLPGTAG------KEGTKGDPGP 864



 Score = 34.7 bits (78), Expect = 0.033
 Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 30/122 (24%)

Query: 57  PPRPARPSHLLWPKRLPGRPGRA--PGDR----RAALP-------PPGT--RSPF----- 96
           PP P  P+ L+ P  + G PG    PG+R    RA LP       PPGT    PF     
Sbjct: 293 PPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSG 352

Query: 97  --------ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDPG 148
                   A   A+     QQ     R P        RP P     +     +G+SGD G
Sbjct: 353 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPG--LKGESGDLG 410

Query: 149 PE 150
           P+
Sbjct: 411 PQ 412



 Score = 30.4 bits (67), Expect = 0.62
 Identities = 42/152 (27%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 12  RGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPR--------PRASLPP-----P 58
           RG    +G   P G +   E      + PRG    + PR        P    PP      
Sbjct: 466 RGDTGAQGLPGPPGEDG--ERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMD 523

Query: 59  RPARPSHLLWPKRLPGRPGRAPGDRRAALP-PPGTRSPFARAAAELGPSYQQIAGLRRRP 117
            P  P   L P+  PG PG+        LP P G   P      E GP  Q   GL   P
Sbjct: 524 GPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH----GEKGP--QGKPGLPGMP 577

Query: 118 VSHSPAHERPSPASSAAASARTSRGDSGDPGP 149
            S  P      P        + ++G SG  GP
Sbjct: 578 GSDGPPGH---PGKEGPPGTKGNQGPSGPQGP 606


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 48/155 (30%), Positives = 55/155 (35%), Gaps = 34/155 (21%)

Query: 9   RAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPR-PRASLPPPRPARPSHLL 67
           R  RGP   RG   P GA   S          +G S    P  P      P P  P+   
Sbjct: 837 RGERGPTGPRGQRGPRGATGKS--------GAKGTSGGDGPHGPPGERGLPGPQGPNGFP 888

Query: 68  WPKRLPGRPGR-----APGDR-------RAALP-PPGTRSPFARAAAELGPSYQQIAGLR 114
            PK  PG PG+      PG R       +   P PPG   P   AA E GP      G R
Sbjct: 889 GPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGP-QGAAGETGP-----MGER 942

Query: 115 RRPVSHSPAHERPSPASSAAASARTSRGDSGDPGP 149
             P    P  E+  P ++         G  GDPGP
Sbjct: 943 GHPGPPGPPGEQGLPGTAG------KEGTKGDPGP 971



 Score = 34.7 bits (78), Expect = 0.033
 Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 30/122 (24%)

Query: 57  PPRPARPSHLLWPKRLPGRPGRA--PGDR----RAALP-------PPGT--RSPF----- 96
           PP P  P+ L+ P  + G PG    PG+R    RA LP       PPGT    PF     
Sbjct: 400 PPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSG 459

Query: 97  --------ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDPG 148
                   A   A+     QQ     R P        RP P     +     +G+SGD G
Sbjct: 460 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPG--LKGESGDLG 517

Query: 149 PE 150
           P+
Sbjct: 518 PQ 519



 Score = 30.4 bits (67), Expect = 0.62
 Identities = 42/152 (27%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 12  RGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPR--------PRASLPP-----P 58
           RG    +G   P G +   E      + PRG    + PR        P    PP      
Sbjct: 573 RGDTGAQGLPGPPGEDG--ERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMD 630

Query: 59  RPARPSHLLWPKRLPGRPGRAPGDRRAALP-PPGTRSPFARAAAELGPSYQQIAGLRRRP 117
            P  P   L P+  PG PG+        LP P G   P      E GP  Q   GL   P
Sbjct: 631 GPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH----GEKGP--QGKPGLPGMP 684

Query: 118 VSHSPAHERPSPASSAAASARTSRGDSGDPGP 149
            S  P      P        + ++G SG  GP
Sbjct: 685 GSDGPPGH---PGKEGPPGTKGNQGPSGPQGP 713


>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
          Length = 825

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 11/117 (9%)

Query: 23  PSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGD 82
           PSG E+ +E  S+          SAE  P    PPP    P+ +      P     AP +
Sbjct: 579 PSGEETTAEEASAAIQLLAATEASAEEAPAEVQPPPAEEAPAEV-----QPPPAEEAPAE 633

Query: 83  RRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASART 139
                PPP   +P   A  +  P+ +  A ++  P   +PA  +P PA  A A  ++
Sbjct: 634 ---VQPPPAEEAP---AEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQS 684



 Score = 26.6 bits (57), Expect = 8.9
 Identities = 35/138 (25%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 23  PSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPS-HLLWPKRLPG------- 74
           PS  ES S  L +  + P      +E  P   LPPP    PS  LL   R P        
Sbjct: 336 PSAEESPSVELLAEILPPSAEESPSEEPPAEILPPPAEKSPSVELLGEIRSPSAQKAPIE 395

Query: 75  -RPGRAPG---DRRAALPPPGTRSPFARAAAELGPS--YQQIAGLRRRPVSHSPAHERPS 128
            +P  A G   +  A + PP      A     L      ++   L+      +PA E P+
Sbjct: 396 VQPLPAEGALEEAPAKVEPPTVEETLADVQPLLPEEAPREEARELQLSTAMETPAEEAPT 455

Query: 129 PASSAAASARTSRGDSGD 146
              S      T+   S +
Sbjct: 456 EFQSPLPKETTAEEASAE 473


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 35/120 (29%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 22  RPSG------AESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPG- 74
           RP+G      AES SE    RP  P G   +  P       P  P R      P   PG 
Sbjct: 545 RPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGP 604

Query: 75  RPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAA 134
           RP    GD  A  P   + +P  R A   G    +       P    P  + P+ A  AA
Sbjct: 605 RPAGPAGDEPAESP---SETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAA 661



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 16/132 (12%)

Query: 19  GASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGR 78
           G +    AES SE    RP  P G   +  P   +  P PRPA P+           P  
Sbjct: 528 GPAGDEPAESPSETPGPRPAGPAGDEPAESP---SETPGPRPAGPA--------GDEPAE 576

Query: 79  APGDRRAALPPPGTRSPFARAAAEL-GPSYQQIAGLRRRPVSHSPAHERPSPASSAAASA 137
           +P +     P   TR   A + +E  GP   + AG      + SP+ E P P  +  A  
Sbjct: 577 SPSETPGPSPAGPTRDEPAESPSETPGP---RPAGPAGDEPAESPS-ETPGPRPAGPAGD 632

Query: 138 RTSRGDSGDPGP 149
             +   S  PGP
Sbjct: 633 EPAESPSETPGP 644



 Score = 34.3 bits (77), Expect = 0.043
 Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 19  GASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGR 78
           G +R   AES SE    RP  P G   +  P   +  P PRPA P+           P  
Sbjct: 588 GPTRDEPAESPSETPGPRPAGPAGDEPAESP---SETPGPRPAGPA--------GDEPAE 636

Query: 79  APGDRRAALPPPGTRSPFARA--AAEL 103
           +P +     P   TR   A+A  AAEL
Sbjct: 637 SPSETPGPSPAGPTRDEPAKAGEAAEL 663


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 21/110 (19%)

Query: 31  ELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
           EL ++ P SPR     ++   RA  PPP P  P     P   P  P   P      LPP 
Sbjct: 365 ELKATAPASPRLGQSQSQADERAGTPPPAPPLP-----PPAPPLPPPAPP------LPPA 413

Query: 91  GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPA----HERPSPASSAAAS 136
               P A+ AA         AG  + P S SPA       PSP ++A+++
Sbjct: 414 APPLPCAQKAA------HPPAGFTKTPKSSSPALKPKPNPPSPENTASSA 457



 Score = 31.2 bits (69), Expect = 0.36
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 28/127 (22%)

Query: 37  PVSPRGASFSAEPRPRAS------LPPPRPARPSHL------LWPKRLPGRPGRAPGDRR 84
           P  P+G++    P P  +      +PPP P R S +        P++  G   +AP   R
Sbjct: 280 PAEPKGSALGPNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPS--R 337

Query: 85  AALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGD- 143
             LPP    S   R A+++ P         R P    P   + +  +S       S+ D 
Sbjct: 338 LPLPP----SFHIRPASQVYPD--------RAPEPDCPGELKATAPASPRLGQSQSQADE 385

Query: 144 -SGDPGP 149
            +G P P
Sbjct: 386 RAGTPPP 392



 Score = 28.1 bits (61), Expect = 3.1
 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 11  GRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP-----ARPSH 65
           G  P   +  S P G    S L S    +P       EP P  S+ PP P       P H
Sbjct: 145 GPAPGPPQDISEPPGG---SPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPH 201

Query: 66  LLWPKRLPGRPG---RAPGDRRAALPPPGTRSPFARAAA 101
            L    +P  P     AP     A PPP   +P   A A
Sbjct: 202 TLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPA 240



 Score = 27.7 bits (60), Expect = 4.0
 Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 38  VSPRGASFSAEPRPRASLPPPRPAR--PSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSP 95
           +   GA      +P A   PP+     P+  L PK + G           A+PP  T  P
Sbjct: 600 ICENGADDDKLSKPVAKNLPPQSTTLLPTTSLQPKAMLGPAIPPKATPEPAIPPKATLWP 659

Query: 96  FARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASART-----SRGDSGDPG-P 149
                A LGP+    A     P +   A   P+ AS+A     T     +  DSG  G P
Sbjct: 660 ATPPKATLGPATPLKA--TSGPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQP 717

Query: 150 EAGA 153
           E  A
Sbjct: 718 EKPA 721


>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 21/110 (19%)

Query: 31  ELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
           EL ++ P SPR     ++   RA  PPP P  P     P   P  P   P      LPP 
Sbjct: 365 ELKATAPASPRLGQSQSQADERAGTPPPAPPLP-----PPAPPLPPPAPP------LPPA 413

Query: 91  GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPA----HERPSPASSAAAS 136
               P A+ AA         AG  + P S SPA       PSP ++A+++
Sbjct: 414 APPLPCAQKAA------HPPAGFTKTPKSSSPALKPKPNPPSPENTASSA 457



 Score = 31.2 bits (69), Expect = 0.36
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 28/127 (22%)

Query: 37  PVSPRGASFSAEPRPRAS------LPPPRPARPSHL------LWPKRLPGRPGRAPGDRR 84
           P  P+G++    P P  +      +PPP P R S +        P++  G   +AP   R
Sbjct: 280 PAEPKGSALGPNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPS--R 337

Query: 85  AALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGD- 143
             LPP    S   R A+++ P         R P    P   + +  +S       S+ D 
Sbjct: 338 LPLPP----SFHIRPASQVYPD--------RAPEPDCPGELKATAPASPRLGQSQSQADE 385

Query: 144 -SGDPGP 149
            +G P P
Sbjct: 386 RAGTPPP 392



 Score = 28.1 bits (61), Expect = 3.1
 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 11  GRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP-----ARPSH 65
           G  P   +  S P G    S L S    +P       EP P  S+ PP P       P H
Sbjct: 145 GPAPGPPQDISEPPGG---SPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPH 201

Query: 66  LLWPKRLPGRPG---RAPGDRRAALPPPGTRSPFARAAA 101
            L    +P  P     AP     A PPP   +P   A A
Sbjct: 202 TLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPA 240



 Score = 27.7 bits (60), Expect = 4.0
 Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 38  VSPRGASFSAEPRPRASLPPPRPAR--PSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSP 95
           +   GA      +P A   PP+     P+  L PK + G           A+PP  T  P
Sbjct: 600 ICENGADDDKLSKPVAKNLPPQSTTLLPTTSLQPKAMLGPAIPPKATPEPAIPPKATLWP 659

Query: 96  FARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASART-----SRGDSGDPG-P 149
                A LGP+    A     P +   A   P+ AS+A     T     +  DSG  G P
Sbjct: 660 ATPPKATLGPATPLKA--TSGPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQP 717

Query: 150 EAGA 153
           E  A
Sbjct: 718 EKPA 721


>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
           sapiens]
          Length = 1188

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 21/110 (19%)

Query: 31  ELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
           EL ++ P SPR     ++   RA  PPP P  P     P   P  P   P      LPP 
Sbjct: 365 ELKATAPASPRLGQSQSQADERAGTPPPAPPLP-----PPAPPLPPPAPP------LPPA 413

Query: 91  GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPA----HERPSPASSAAAS 136
               P A+ AA         AG  + P S SPA       PSP ++A+++
Sbjct: 414 APPLPCAQKAA------HPPAGFTKTPKSSSPALKPKPNPPSPENTASSA 457



 Score = 31.2 bits (69), Expect = 0.36
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 28/127 (22%)

Query: 37  PVSPRGASFSAEPRPRAS------LPPPRPARPSHL------LWPKRLPGRPGRAPGDRR 84
           P  P+G++    P P  +      +PPP P R S +        P++  G   +AP   R
Sbjct: 280 PAEPKGSALGPNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPS--R 337

Query: 85  AALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGD- 143
             LPP    S   R A+++ P         R P    P   + +  +S       S+ D 
Sbjct: 338 LPLPP----SFHIRPASQVYPD--------RAPEPDCPGELKATAPASPRLGQSQSQADE 385

Query: 144 -SGDPGP 149
            +G P P
Sbjct: 386 RAGTPPP 392



 Score = 28.1 bits (61), Expect = 3.1
 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 11  GRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRP-----ARPSH 65
           G  P   +  S P G    S L S    +P       EP P  S+ PP P       P H
Sbjct: 145 GPAPGPPQDISEPPGG---SPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPH 201

Query: 66  LLWPKRLPGRPG---RAPGDRRAALPPPGTRSPFARAAA 101
            L    +P  P     AP     A PPP   +P   A A
Sbjct: 202 TLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPA 240



 Score = 27.7 bits (60), Expect = 4.0
 Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 38  VSPRGASFSAEPRPRASLPPPRPAR--PSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSP 95
           +   GA      +P A   PP+     P+  L PK + G           A+PP  T  P
Sbjct: 600 ICENGADDDKLSKPVAKNLPPQSTTLLPTTSLQPKAMLGPAIPPKATPEPAIPPKATLWP 659

Query: 96  FARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASART-----SRGDSGDPG-P 149
                A LGP+    A     P +   A   P+ AS+A     T     +  DSG  G P
Sbjct: 660 ATPPKATLGPATPLKA--TSGPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQP 717

Query: 150 EAGA 153
           E  A
Sbjct: 718 EKPA 721


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 34/134 (25%), Positives = 50/134 (37%), Gaps = 19/134 (14%)

Query: 18  RGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPG 77
           R ASRP   ++  +++    V P   S S  P     +  P P +P     P + PG   
Sbjct: 276 RDASRPQTKQA--DIVRGESVKPSLPSPSKPP-----IQQPTPGKP-----PAQQPGHEK 323

Query: 78  RAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASA 137
             PG  +    P G   P A+    + P  Q        P +  P  +   PA   A   
Sbjct: 324 SQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQP-------PGTTKPPAQPLGPAKPPAQQT 376

Query: 138 RTSRGDSGDPGPEA 151
            + +  S  PGP+A
Sbjct: 377 GSEKPSSEQPGPKA 390



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 16/122 (13%)

Query: 37  PVSPRGASFSAEPRPRASLPP---PRPARPSHLLWPKRLPGR---PGRAPGDRRAALPPP 90
           P    G   ++  +   + PP   P PA+P     P + PG    P + PG  +     P
Sbjct: 450 PAQQAGPGKTSAQQTGPTKPPSQLPGPAKP-----PPQQPGPAKPPPQQPGSAKPPSQQP 504

Query: 91  GTRSPFARAAAELGPSYQQIAGLR---RRPVSHSPAHERPSPASSAA--ASARTSRGDSG 145
           G+  P  +      PS QQ    +   ++P S  P+ ++PSPA  +A  ++   S+  SG
Sbjct: 505 GSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSG 564

Query: 146 DP 147
            P
Sbjct: 565 KP 566



 Score = 28.5 bits (62), Expect = 2.3
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 8/113 (7%)

Query: 37  PVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPPGTRSPF 96
           P  P G +     +  +  P      P  L  P  +   P + PG  +      GT  P 
Sbjct: 362 PAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPL 421

Query: 97  ARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDPGP 149
           A+      P+  +  G  + PV      ++P P    A  A   +  +   GP
Sbjct: 422 AQQPGLQSPA--KAPGPTKTPV------QQPGPGKIPAQQAGPGKTSAQQTGP 466



 Score = 28.5 bits (62), Expect = 2.3
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 37  PVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRP-GRAPGDRRAALPPPGTRSP 95
           P    G + +   +P     P + A P      +  P +P  + PG  +     PG   P
Sbjct: 430 PAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKP 489

Query: 96  FARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRGDSGDPG 148
             +      P  QQ       P S  P  ++P PA  +     +++  S  PG
Sbjct: 490 PPQQPGSAKPPSQQ-------PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPG 535



 Score = 28.5 bits (62), Expect = 2.3
 Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 23   PSGAESYSELLSSRPVSPR------GASFSAEPRPRASLP---PPRPARPSHLLWPKRLP 73
            PSG+ S S L    P  PR          SA+P P    P   PP P  P     P    
Sbjct: 2377 PSGSPSVSSL----PAKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTS 2432

Query: 74   GRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRR--PVSH----SPAHERP 127
             +P   P  +     P  T +P   A   L    +  A LR    PV+     +P    P
Sbjct: 2433 PKPTILPKKKLTVASPVTTATPLFDAVTTL----ETTAVLRSNGLPVTRICTTAPPPVPP 2488

Query: 128  SPASSAAASARTSRGDSGDP 147
             P+S  +    T R +   P
Sbjct: 2489 KPSSIPSGLVFTHRPEPSKP 2508


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,022,410
Number of Sequences: 37866
Number of extensions: 638539
Number of successful extensions: 6550
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 1219
Number of HSP's that attempted gapping in prelim test: 4500
Number of HSP's gapped (non-prelim): 2983
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.