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Search of human proteins with 239749872
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749872 PREDICTED: hypothetical protein [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749872 PREDICTED: hypothetical protein [Homo sapiens] 268 6e-73
gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo ... 268 6e-73
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 39 8e-04
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 38 0.002
gi|9966841 cell death regulator aven [Homo sapiens] 38 0.002
gi|95147333 phospholipase C, beta 2 [Homo sapiens] 37 0.003
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 37 0.005
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 37 0.005
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 37 0.005
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 36 0.007
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 36 0.007
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 36 0.009
gi|239749756 PREDICTED: hypothetical protein [Homo sapiens] 35 0.015
gi|239744015 PREDICTED: hypothetical protein XP_002343005 [Homo ... 35 0.015
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 35 0.015
gi|46249414 latent transforming growth factor beta binding prote... 35 0.019
gi|28875797 small protein rich in arginine and glycine [Homo sap... 34 0.033
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 34 0.033
gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens] 34 0.033
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 33 0.043
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 33 0.043
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 33 0.056
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 33 0.056
gi|30425462 hypothetical protein LOC284185 [Homo sapiens] 33 0.056
gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo sap... 33 0.073
gi|126352608 elastin isoform e precursor [Homo sapiens] 32 0.095
gi|126352446 elastin isoform d precursor [Homo sapiens] 32 0.095
gi|126352322 elastin isoform c precursor [Homo sapiens] 32 0.095
gi|126352700 elastin isoform b precursor [Homo sapiens] 32 0.095
gi|126352440 elastin isoform a precursor [Homo sapiens] 32 0.095
>gi|239749872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 268 bits (686), Expect = 6e-73
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MARGCSKSLPPTRRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEK 60
MARGCSKSLPPTRRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEK
Sbjct: 1 MARGCSKSLPPTRRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEK 60
Query: 61 ERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGSWLHARPGGER 120
ERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGSWLHARPGGER
Sbjct: 61 ERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGSWLHARPGGER 120
Query: 121 FSRPR 125
FSRPR
Sbjct: 121 FSRPR 125
>gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo
sapiens]
Length = 125
Score = 268 bits (686), Expect = 6e-73
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MARGCSKSLPPTRRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEK 60
MARGCSKSLPPTRRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEK
Sbjct: 1 MARGCSKSLPPTRRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEK 60
Query: 61 ERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGSWLHARPGGER 120
ERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGSWLHARPGGER
Sbjct: 61 ERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGSWLHARPGGER 120
Query: 121 FSRPR 125
FSRPR
Sbjct: 121 FSRPR 125
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 39.3 bits (90), Expect = 8e-04
Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 10 PPTRRKPHGPGPWRSIC-WVVMARLWR-ATTRGDRRAGRAEQLAGHPRRLSEKERRG-AG 66
P +P GPWR+ W W A T G+ + + A P + G
Sbjct: 1041 PRNTERPPETGPWRAPGPWEKTPESWGPAPTIGEPAPETSLERAPAPSAVVSSRNGGETA 1100
Query: 67 PGSLGLAG----------------AGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGS 110
PG LG A G PR PG GRL G G R G T G PGS
Sbjct: 1101 PGPLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGGRAPVGT--GTAPGGGPGS 1158
Query: 111 WLHARPGGERFSRPR 125
+ A+ G +RP+
Sbjct: 1159 GVDAKAGWVDNTRPQ 1173
Score = 33.5 bits (75), Expect = 0.043
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 6 SKSLPPTRRKPH-GPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEKERRG 64
S +LPP P GPGP R A G G AE+ E++
Sbjct: 1261 SLALPPLTLTPFPGPGPRRPPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEEA 1320
Query: 65 AGPGSLGLAGAGQPRGPGRGRLRP 88
A PG+ A PRGPGR R P
Sbjct: 1321 AAPGA-----AAGPRGPGRARAAP 1339
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 38.1 bits (87), Expect = 0.002
Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 34 WRATTRGDRRAGRAEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLR 93
+R TT ++ A A G R RR PGS G AG+G+ G LRP RG R
Sbjct: 805 FRWTTSLEKAATTATARRGGLR----SRRRSPSPGSQGPAGSGRS-----GHLRPARGAR 855
Query: 94 VFDGAPRATR 103
G P ATR
Sbjct: 856 QGAGGPEATR 865
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/49 (48%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 63 RGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAPGSW 111
RG G G G G + RG GRG R RG R GAPR +RR PG W
Sbjct: 37 RGGGGGGGGDGGGRRGRGRGRG-FRGARGGRGGGGAPRGSRR--EPGGW 82
>gi|95147333 phospholipase C, beta 2 [Homo sapiens]
Length = 1185
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 53 HPRRLSEKERRGAGP-------GSLGLAGAGQPR--GPGRGRLRPGRGLRVFDGAPRATR 103
H + L E ERRGA G+ LA G P G G +L PG+G R PR
Sbjct: 905 HEKELRELERRGARRWEELLQRGAAQLAELGPPGVGGVGACKLGPGKGSRKKRSLPREES 964
Query: 104 RGAAPG 109
GAAPG
Sbjct: 965 AGAAPG 970
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.005
Identities = 41/124 (33%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 13 RRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEKERRGAG----PG 68
RRKP P P R C R RG RA RAE PR ++E+ G G P
Sbjct: 274 RRKP-APCP-RGACAA------RLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPS 325
Query: 69 SLGLAGAGQ---PRGPGRGRLRPGRGLRV----FDGAPRATRRGAAPGSWLHARPGGERF 121
++G G+ P G RG+ P RV + R + RG PG R G RF
Sbjct: 326 FSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGD----RRGDGRF 381
Query: 122 SRPR 125
R
Sbjct: 382 GGGR 385
Score = 33.1 bits (74), Expect = 0.056
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 43 RAGRAEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRAT 102
R G + A PR + G G G L G G PRG G P LR+ PR
Sbjct: 110 RRGSEARKAQTPRPAGVAQGSGGG-GERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPF 168
Query: 103 RRGAAPGS-----------WLHARPGGERFSR 123
A G W A GGE+ +R
Sbjct: 169 PPAPAGGKGEGGGKESAVLWKGAEGGGEKGNR 200
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 36.6 bits (83), Expect = 0.005
Identities = 41/124 (33%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 13 RRKPHGPGPWRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEKERRGAG----PG 68
RRKP P P R C R RG RA RAE PR ++E+ G G P
Sbjct: 274 RRKP-APCP-RGACAA------RLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPS 325
Query: 69 SLGLAGAGQ---PRGPGRGRLRPGRGLRV----FDGAPRATRRGAAPGSWLHARPGGERF 121
++G G+ P G RG+ P RV + R + RG PG R G RF
Sbjct: 326 FSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGD----RRGDGRF 381
Query: 122 SRPR 125
R
Sbjct: 382 GGGR 385
Score = 33.1 bits (74), Expect = 0.056
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 43 RAGRAEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRAT 102
R G + A PR + G G G L G G PRG G P LR+ PR
Sbjct: 110 RRGSEARKAQTPRPAGVAQGSGGG-GERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPF 168
Query: 103 RRGAAPGS-----------WLHARPGGERFSR 123
A G W A GGE+ +R
Sbjct: 169 PPAPAGGKGEGGGKESAVLWKGAEGGGEKGNR 200
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 36.6 bits (83), Expect = 0.005
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 35 RATTRGDRRAGRAEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPG--RGL 92
RA G R R +L L+ RG GP L A A Q G GR + RPG L
Sbjct: 111 RARRGGTRTGDRGAELTRPQSLLA----RGLGPNWLAAAAANQGLGRGRDQPRPGPLPSL 166
Query: 93 RVFDGAPRATRRG--AAPGSWLHARPGGERFSRP 124
R + R G GS LHA PG RP
Sbjct: 167 RAQEAGRRGNAVGGVTGTGSRLHA-PGARGSQRP 199
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 36.2 bits (82), Expect = 0.007
Identities = 30/77 (38%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 51 AGHPRRLSEKERRGAGPGSLGLAGAG--QPRGPGRGRLRPGRGLRVFDGAPRATRRGAAP 108
A PRR + RR A G G A A R PG G PG GL GA A GAAP
Sbjct: 89 APRPRRQRLRRRR-AKVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAV--GAAP 145
Query: 109 GSWLHARPGGERFSRPR 125
+ H +P G P+
Sbjct: 146 AAARHRKPRGRSRRAPQ 162
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.2 bits (82), Expect = 0.007
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 39 RGDRRAGRAEQLAGHPRRLSEKERRGAGPG----SLGLAGAGQPRGPGRGRLRPG----- 89
R RR R+ A PRR + R A P SL A + G GRG PG
Sbjct: 388 RRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS 447
Query: 90 ------RGLRVFDGAPRATRRGAAPGSWLHARPGG 118
G R + PRA +P H R GG
Sbjct: 448 ERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGG 482
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 35.8 bits (81), Expect = 0.009
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 67 PGSLGLAGAGQPRGPGRGRLRPG-RGLRVFDGAPRATRRGAAPGSWLH-ARPGGERFSRP 124
PG G G+ PRG + RPG RG + DG P + APG H + PG + SRP
Sbjct: 131 PGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRP 190
Score = 30.8 bits (68), Expect = 0.28
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 52 GHPRRLSEKERRGAGPGSLGLAGAGQPRGP-GRGRLRPGRGLRVFDGAPRATRRGAAPGS 110
G P +K G+ PG GLAG+ P GP G L+ GRG + G P AT PGS
Sbjct: 861 GEPGEPGQKGDAGS-PGPQGLAGSPGPHGPNGVPGLKGGRGTQ---GPPGAT---GFPGS 913
Query: 111 WLHARPGG 118
P G
Sbjct: 914 AGRVGPPG 921
Score = 28.9 bits (63), Expect = 1.1
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 52 GHPRRLSEKERRGAGPGSLGLAGAGQPRG-PGRGRLRPGRGLRVFDGAPRATRRGAAPGS 110
G P E R G PG +G AG+ RG PG L +G R G APGS
Sbjct: 261 GKPGEDGEPGRNG-NPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGS 319
Query: 111 WLHARPGG 118
A P G
Sbjct: 320 KGEAGPTG 327
>gi|239749756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 35.0 bits (79), Expect = 0.015
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 13 RRKPHGPGP-WRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEKERRGAGPGSLG 71
RR P GP W S+ + V + RG+RR + R +++R GAG
Sbjct: 293 RRVPDARGPLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAG----- 347
Query: 72 LAGAGQPRG 80
G GQPRG
Sbjct: 348 --GPGQPRG 354
>gi|239744015 PREDICTED: hypothetical protein XP_002343005 [Homo
sapiens]
Length = 385
Score = 35.0 bits (79), Expect = 0.015
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 13 RRKPHGPGP-WRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEKERRGAGPGSLG 71
RR P GP W S+ + V + RG+RR + R +++R GAG
Sbjct: 293 RRVPDARGPLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAG----- 347
Query: 72 LAGAGQPRG 80
G GQPRG
Sbjct: 348 --GPGQPRG 354
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 35.0 bits (79), Expect = 0.015
Identities = 35/83 (42%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 43 RAGRAEQLAGHPRRLSEKERRGAG-----PGSLGLAGAGQPRGPGRGRLRPGRGLRVFDG 97
RAGRAE A R S +R A PG L GA PG R RP R
Sbjct: 26 RAGRAEPPALPARPASAPQRHPAPVPARWPGPGALPGAS----PGVRRRRPPRP------ 75
Query: 98 APRATRRGAAPGSWLHARPGGER 120
PRA RRGAA L RPG R
Sbjct: 76 RPRAGRRGAARLEKLARRPGEPR 98
>gi|46249414 latent transforming growth factor beta binding protein
1 isoform LTBP-1L [Homo sapiens]
Length = 1722
Score = 34.7 bits (78), Expect = 0.019
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 43 RAGRAEQLAGHPRRLS-----EKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDG 97
R R+ AG P R S E+ RR + PG L G P P
Sbjct: 61 RYSRSSAAAGAPSRASPGVPSERTRRTSKPGGAALQGLRPPPPP---------------- 104
Query: 98 APRATRRGAAPGSWLHARPGGERFSRP 124
P R A PG LH PGG + P
Sbjct: 105 -PPEPARPAVPGGQLHPNPGGHPAAAP 130
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 33.9 bits (76), Expect = 0.033
Identities = 25/63 (39%), Positives = 27/63 (42%)
Query: 43 RAGRAEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRAT 102
R GRA RR + R G G G LG G+ GRGR GRG F G R
Sbjct: 140 RGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGR 199
Query: 103 RRG 105
RG
Sbjct: 200 GRG 202
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 33.9 bits (76), Expect = 0.033
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 50 LAGHPRRLSEKERRGA-----GPGSLGLAGA----GQPRGPGRGRLRPGRGLRVFDGAPR 100
+AG P EK +G+ PGS GL G+ G P PG + +GL DG P
Sbjct: 1071 IAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPG 1130
Query: 101 ATRRGAAPGSWLHARPGGER 120
PG+ P G++
Sbjct: 1131 VKGEAGLPGTPGPTGPAGQK 1150
Score = 25.8 bits (55), Expect = 8.9
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
Query: 52 GHPRRLSEKERRGAGPGSLGLAGAGQPRG-------------PGRG----RLRPGRGLRV 94
G P + K RG PG G+AG P+G PG RL+ +G
Sbjct: 489 GFPGQPGAKGDRGL-PGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPG 547
Query: 95 FDGAPRATRRGAAPG 109
F G P T R +PG
Sbjct: 548 FPGQPGMTGRAGSPG 562
>gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]
Length = 496
Score = 33.9 bits (76), Expect = 0.033
Identities = 29/74 (39%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 11 PTRRKPHGPGPWRSICWVVMARLWRATT--RGDRRAGRAEQLAGHPRRLSEKERRGAGPG 68
P R G G RS V R R RG + AGR + G PR +SE GAG G
Sbjct: 45 PAPRAREGGGCGRSEVRPVAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMSEP---GAGAG 101
Query: 69 SLGLAGAGQPRGPG 82
S L +P GPG
Sbjct: 102 S-SLLDVAEPGGPG 114
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 33.5 bits (75), Expect = 0.043
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 41 DRRAGRAEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPR 100
D R G R+S + A PGS GAG P+ PG + R GRG+RV +G+P
Sbjct: 468 DGRRASPSAPGGDQDRVSTTPQPTAQPGS----GAG-PQRPGPTQKRGGRGVRVPEGSPA 522
Query: 101 ----ATRRGAA 107
+ RRG A
Sbjct: 523 RIAFSGRRGGA 533
Score = 26.9 bits (58), Expect = 4.0
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 42 RRAGRAEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRA 101
RR G Q L ++ERR G G+ G Q R G+G L D PR
Sbjct: 529 RRGGAKAQPMAEAESLGDRERRDGG-GAAGGGAVAQLRAVGQGALCAAPR----DSGPRV 583
Query: 102 TRRGAAPGSWLHARPGGERFSRP 124
+ G + PGG+ + P
Sbjct: 584 CATVESGG--IPRDPGGQGHTLP 604
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 33.5 bits (75), Expect = 0.043
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 6 SKSLPPTRRKPHGPG---PWRSICW--VVMARLWRATTRGDRRAGRAEQLAGHPRR--LS 58
S+ LPP R+P GP P RS C R ++T RG R + A P++ L+
Sbjct: 119 SRRLPPESRRPGGPAKTHPARSACCRPRKSGRWPQSTARGLPAKTRPKPPAPAPQQPALT 178
Query: 59 EKERRGAGPGSLG-LAGAGQPRGPGRGRLRP 88
E + A P LG L A +PR R + RP
Sbjct: 179 EHQEPRAWPEVLGLLVTAPEPRTKTRAQSRP 209
>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]
Length = 180
Score = 33.1 bits (74), Expect = 0.056
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 66 GPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAA 107
GPG G G PRG G R RG GAPR GAA
Sbjct: 33 GPGEAGATGGRGPRGAGAARASGPRG-----GAPRGPHGGAA 69
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 66 GPGSLGLAGA--GQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAP 108
GPG G+ G GPG GRG R A + RG AP
Sbjct: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 33.1 bits (74), Expect = 0.056
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 66 GPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGAPRATRRGAA 107
GPG G G PRG G R RG GAPR GAA
Sbjct: 33 GPGEAGATGGRGPRGAGAARASGPRG-----GAPRGPHGGAA 69
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 66 GPGSLGLAGA--GQPRGPGRGRLRPGRGLRVFDGAPRATRRGAAP 108
GPG G+ G GPG GRG R A + RG AP
Sbjct: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
>gi|30425462 hypothetical protein LOC284185 [Homo sapiens]
Length = 264
Score = 33.1 bits (74), Expect = 0.056
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 34 WRATTRGDRRAGRAEQLAGHPRRLSEKERRGA-GPGSLGLAGAGQPRGPGRGRL--RPGR 90
W G R AEQ +++E R A GP LGL G G GRG+ GR
Sbjct: 126 WTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGL---GDAAGDGRGQTGQEKGR 182
Query: 91 --GLRVFDGAPRATRRGAAPGSWLHA 114
G + A + R+G PG W A
Sbjct: 183 AEGRQARKSACKCPRKGPNPGPWTRA 208
>gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo
sapiens]
Length = 304
Score = 32.7 bits (73), Expect = 0.073
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 62 RRGAGPGSLGLAGAGQPRGPGR-GRLRPGRGLRVFDGAPRATRR----------GAAPGS 110
+RG PG G G GRL G G ++ +G R + R G APGS
Sbjct: 185 QRGLQPGPCPCQQQGGYLGQKLPGRLSEGVGPQLQEGGNRRSARPWRLHGAQYQGPAPGS 244
Query: 111 WLHARPGGERFSRP 124
W+ PG SRP
Sbjct: 245 WVEEGPGAAMSSRP 258
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 32.3 bits (72), Expect = 0.095
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 64 GAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGA------------PRATRRGAAPGSW 111
G GPG +G+ GAG P G PG G+ V GA P A + AA +
Sbjct: 328 GFGPGVVGVPGAGVP-----GVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAK 382
Query: 112 LHARPG 117
ARPG
Sbjct: 383 YGARPG 388
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 32.3 bits (72), Expect = 0.095
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 64 GAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGA------------PRATRRGAAPGSW 111
G GPG +G+ GAG P G PG G+ V GA P A + AA +
Sbjct: 333 GFGPGVVGVPGAGVP-----GVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAK 387
Query: 112 LHARPG 117
ARPG
Sbjct: 388 YGARPG 393
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 32.3 bits (72), Expect = 0.095
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 64 GAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGA------------PRATRRGAAPGSW 111
G GPG +G+ GAG P G PG G+ V GA P A + AA +
Sbjct: 333 GFGPGVVGVPGAGVP-----GVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAK 387
Query: 112 LHARPG 117
ARPG
Sbjct: 388 YGARPG 393
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 32.3 bits (72), Expect = 0.095
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 64 GAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGA------------PRATRRGAAPGSW 111
G GPG +G+ GAG P G PG G+ V GA P A + AA +
Sbjct: 318 GFGPGVVGVPGAGVP-----GVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAK 372
Query: 112 LHARPG 117
ARPG
Sbjct: 373 YGARPG 378
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 32.3 bits (72), Expect = 0.095
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 64 GAGPGSLGLAGAGQPRGPGRGRLRPGRGLRVFDGA------------PRATRRGAAPGSW 111
G GPG +G+ GAG P G PG G+ V GA P A + AA +
Sbjct: 328 GFGPGVVGVPGAGVP-----GVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAK 382
Query: 112 LHARPG 117
ARPG
Sbjct: 383 YGARPG 388
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,367,677
Number of Sequences: 37866
Number of extensions: 446236
Number of successful extensions: 2956
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 2529
Number of HSP's gapped (non-prelim): 745
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.