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Search of human proteins with 239749606
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749606 PREDICTED: similar to zinc finger protein 598
[Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755087 PREDICTED: similar to zinc finger protein 598 [Homo... 327 3e-90
gi|239749606 PREDICTED: similar to zinc finger protein 598 [Homo... 327 3e-90
gi|239743874 PREDICTED: similar to zinc finger protein 598 [Homo... 274 3e-74
gi|30039694 zinc finger protein 598 [Homo sapiens] 267 2e-72
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 34 0.060
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 34 0.060
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 32 0.18
gi|33356148 formin-like 1 [Homo sapiens] 32 0.18
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 31 0.51
gi|60460889 Myb protein P42POP [Homo sapiens] 31 0.51
gi|210032580 SET domain containing 1B [Homo sapiens] 31 0.51
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 30 0.67
gi|38045948 ubiquitin-like modifier activating enzyme 7 [Homo sa... 30 0.67
gi|58331242 formin homology 2 domain containing 3 [Homo sapiens] 30 0.87
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 30 0.87
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 30 0.87
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 30 1.1
gi|13273315 homeobox B4 [Homo sapiens] 30 1.1
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 30 1.1
gi|56549694 enabled homolog isoform a [Homo sapiens] 29 1.5
gi|39930375 enabled homolog isoform b [Homo sapiens] 29 1.5
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 29 1.5
gi|109689723 abl interactor 2 [Homo sapiens] 29 1.5
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 29 1.5
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 29 1.5
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 29 1.5
gi|61743942 abl-interactor 1 isoform a [Homo sapiens] 29 1.5
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 29 1.5
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 29 1.5
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 29 1.5
>gi|239755087 PREDICTED: similar to zinc finger protein 598 [Homo
sapiens]
Length = 159
Score = 327 bits (837), Expect = 3e-90
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE
Sbjct: 1 MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
Query: 61 NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120
NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR
Sbjct: 61 NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120
Query: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT
Sbjct: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
>gi|239749606 PREDICTED: similar to zinc finger protein 598 [Homo
sapiens]
Length = 159
Score = 327 bits (837), Expect = 3e-90
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE
Sbjct: 1 MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
Query: 61 NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120
NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR
Sbjct: 61 NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120
Query: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT
Sbjct: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
>gi|239743874 PREDICTED: similar to zinc finger protein 598 [Homo
sapiens]
Length = 186
Score = 274 bits (700), Expect = 3e-74
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 25 SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 84
SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS
Sbjct: 52 SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 111
Query: 85 AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 144
AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR
Sbjct: 112 AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 171
Query: 145 DDDFPSLQAISRIIT 159
DDDFPSLQAISRIIT
Sbjct: 172 DDDFPSLQAISRIIT 186
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 267 bits (683), Expect = 2e-72
Identities = 149/225 (66%), Positives = 151/225 (67%), Gaps = 66/225 (29%)
Query: 1 MPPPPGFSAVVLLKGT--------------PPPPPPGL---------------------- 24
MPPPPGFSAVVLLKGT PPP GL
Sbjct: 680 MPPPPGFSAVVLLKGTPPPPPPGLVPPISKPPPGFSGLLPSPHPACVPSPATTTTTKAPR 739
Query: 25 ------------------------------SDEARFSEFKSHSGEFRQGLISAAQYYKSC 54
SDEARFSEFKSHSGEFRQGLISAAQYYKSC
Sbjct: 740 LLPAPRAYLVPENFRERNLQLIQSIRDFLQSDEARFSEFKSHSGEFRQGLISAAQYYKSC 799
Query: 55 RGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQ 114
R LLGENFQKVFNELLVLLPDTAKQQE+LSAHTDF NREK LSTKSK NKKSAWQATTQQ
Sbjct: 800 RDLLGENFQKVFNELLVLLPDTAKQQELLSAHTDFCNREKPLSTKSKKNKKSAWQATTQQ 859
Query: 115 AGLDCRVCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
AGLDCRVCPTCQQVL HGDASSHQALHAARDDDFPSLQAI+RIIT
Sbjct: 860 AGLDCRVCPTCQQVLAHGDASSHQALHAARDDDFPSLQAIARIIT 904
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 33.9 bits (76), Expect = 0.060
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 52 KSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKS 106
+ CR L + +K+ NE+L P A +++I + N EK L KSKN +K+
Sbjct: 3662 EECRKALEDIDEKISNEVLKSSPSYAMRRKIEEINNGLHNVEKMLQQKSKNIEKA 3716
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 33.9 bits (76), Expect = 0.060
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 52 KSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKS 106
+ CR L + +K+ NE+L P A +++I + N EK L KSKN +K+
Sbjct: 3662 EECRKALEDIDEKISNEVLKSSPSYAMRRKIEEINNGLHNVEKMLQQKSKNIEKA 3716
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 [Homo
sapiens]
Length = 1461
Score = 32.3 bits (72), Expect = 0.18
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPG 23
PPPPG + + PPPPPPG
Sbjct: 1256 PPPPGEHSGIPFPTPPPPPPPG 1277
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 2 PPPPGFSAVVLLKG----TPPPPPP 22
PPPPG + G TPPPPPP
Sbjct: 1273 PPPPGEHSSSGGSGVPFSTPPPPPP 1297
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 32.3 bits (72), Expect = 0.18
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPG 23
PPPPG V PPPPPPG
Sbjct: 592 PPPPGTDGPVPPPPPPPPPPPG 613
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 30.8 bits (68), Expect = 0.51
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPP SA ++ PPPPPP
Sbjct: 586 PPPPPGSAGMMYAPPPPPPPP 606
Score = 30.8 bits (68), Expect = 0.51
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPGLSDEARF 30
PPPPG + ++ PPPPPP D + F
Sbjct: 587 PPPPGSAGMMY---APPPPPPPPMDPSNF 612
Score = 26.6 bits (57), Expect = 9.6
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPP 22
+P PPG L G PPPPPP
Sbjct: 567 VPLPPGVQPP-LPPGAPPPPPP 587
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 0.51
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 1 MPPPPGFSAVVLLKGTPPP---PPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGL 57
+PPPP + V +PPP PPP LS S +F + A + G
Sbjct: 227 LPPPPPLAQVAPSPPSPPPPPRPPPTLS-------ASDPSLDFLRAQQETANAIRELAGT 279
Query: 58 LGENFQKVFNELLVLLP 74
L + K+ L LLP
Sbjct: 280 LRQGLAKLSEALSALLP 296
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 30.8 bits (68), Expect = 0.51
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPP 22
+PPPPGF L PPPPPP
Sbjct: 681 LPPPPGFPP---LPPPPPPPPP 699
Score = 29.6 bits (65), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PP PGF L PPPPPP
Sbjct: 698 PPQPGFPMPPPLPPPPPPPPP 718
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 30.4 bits (67), Expect = 0.67
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPP ++ + + PPPPPP
Sbjct: 585 PPPPSYAGIAGSELPPPPPPP 605
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKS 35
+PPPP + VL PPPPP LS E ++ K+
Sbjct: 128 LPPPP--ADPVLDLPLPPPPPEPLSQEEEEAQAKA 160
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPP 22
+PPPP A + PPPPPP
Sbjct: 583 VPPPPPSYAGIAGSELPPPPPP 604
>gi|38045948 ubiquitin-like modifier activating enzyme 7 [Homo
sapiens]
Length = 1012
Score = 30.4 bits (67), Expect = 0.67
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 32 EFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQ---------EI 82
EF ++ +++AA Y GL G ELL LLP QQ E+
Sbjct: 716 EFDTNQDTHLLYVLAAANLYAQMHGLPGSQDWTALRELLKLLPQPDPQQMAPIFASNLEL 775
Query: 83 LSAHTDFGNREKTLSTKSKNNKKSAW 108
SA +FG ++ K N W
Sbjct: 776 ASASAEFGPEQQ----KELNKALEVW 797
>gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]
Length = 1439
Score = 30.0 bits (66), Expect = 0.87
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPGLSD 26
PPPP F G PPPPPP L D
Sbjct: 849 PPPPTFL------GLPPPPPPPLLD 867
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 30.0 bits (66), Expect = 0.87
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPP 22
+PPPP S L+ PPPPPP
Sbjct: 958 LPPPPHPSVQQQLQQQPPPPPP 979
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 30.0 bits (66), Expect = 0.87
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 7 FSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
F ++ + PP PPPG +R + + SG R ISA K+CR LL E
Sbjct: 80 FLLLLYVHSDPPSPPPGRKRSSREPQ-RERSGRSRSRKISA---LKACRILLRE 129
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 29.6 bits (65), Expect = 1.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPPG + PPPPPP
Sbjct: 383 PPPPGAGGPPMPPPPPPPPPP 403
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 7/21 (33%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPPG +G PPPPPP
Sbjct: 359 PPPPG-------RGGPPPPPP 372
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPP 22
+PPPP + + PPPPPP
Sbjct: 381 LPPPPPGAGGPPMPPPPPPPPP 402
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 11/27 (40%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPGLSDEA 28
PPPP PPPPPPGLS A
Sbjct: 78 PPPP-----------PPPPPPGLSPRA 93
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 29.6 bits (65), Expect = 1.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPPGL 24
MPPPP + PPPPPPGL
Sbjct: 92 MPPPPLGLPPLQPPPPPPPPPPGL 115
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPP 22
+PPPPG L T PPPPP
Sbjct: 330 LPPPPGPPPPPPLPSTGPPPPP 351
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 1 MPPPPGFSAVVLLKGTPPPPPP 22
+PPPPG L T PPPPP
Sbjct: 330 LPPPPGPPPPPPLPSTGPPPPP 351
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 29.3 bits (64), Expect = 1.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
P PP S + L PPPPPP
Sbjct: 503 PTPPSTSGISALPPPPPPPPP 523
>gi|109689723 abl interactor 2 [Homo sapiens]
Length = 475
Score = 29.3 bits (64), Expect = 1.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPP V + PPPPPP
Sbjct: 365 PPPPPVEEPVFDESPPPPPPP 385
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 29.3 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPP + + +PPPPPP
Sbjct: 364 PPPPPPDDIPMFDDSPPPPPP 384
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
PPPP + PPPPPP + E + ++ + G
Sbjct: 365 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 406
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 29.3 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPP + + +PPPPPP
Sbjct: 340 PPPPPPDDIPMFDDSPPPPPP 360
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
PPPP + PPPPPP + E + ++ + G
Sbjct: 341 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 382
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 29.3 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPP + + +PPPPPP
Sbjct: 369 PPPPPPDDIPMFDDSPPPPPP 389
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
PPPP + PPPPPP + E + ++ + G
Sbjct: 370 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 411
>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
Length = 508
Score = 29.3 bits (64), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 2 PPPPGFSAVVLLKGTPPPPPP 22
PPPP + + +PPPPPP
Sbjct: 396 PPPPPPDDIPMFDDSPPPPPP 416
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 2 PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
PPPP + PPPPPP + E + ++ + G
Sbjct: 397 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 438
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 3 PPPGFSAVVLLKGTPPPPPP 22
PPPGF G PPPPPP
Sbjct: 707 PPPGFG-----PGVPPPPPP 721
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 3 PPPGFSAVVLLKGTPPPPPP 22
PPPGF G PPPPPP
Sbjct: 692 PPPGFG-----PGVPPPPPP 706
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 3 PPPGFSAVVLLKGTPPPPPP 22
PPPGF G PPPPPP
Sbjct: 707 PPPGFG-----PGVPPPPPP 721
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,257,039
Number of Sequences: 37866
Number of extensions: 425207
Number of successful extensions: 4661
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 3864
Number of HSP's gapped (non-prelim): 691
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.