Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 117938295
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117938295 jerky isoform b [Homo sapiens]
(556 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117938295 jerky isoform b [Homo sapiens] 1132 0.0
gi|117938293 jerky isoform a [Homo sapiens] 1075 0.0
gi|22547224 jerky homolog-like [Homo sapiens] 305 7e-83
gi|23312392 tigger transposable element derived 2 [Homo sapiens] 289 4e-78
gi|22325392 tigger transposable element derived 7 [Homo sapiens] 199 7e-51
gi|22209001 hypothetical protein LOC200765 [Homo sapiens] 170 3e-42
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 159 6e-39
gi|239755627 PREDICTED: similar to cag [Homo sapiens] 142 1e-33
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ... 142 1e-33
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ... 142 1e-33
gi|22219477 tigger transposable element derived 4 [Homo sapiens] 139 7e-33
gi|13569924 hypothetical protein LOC81789 [Homo sapiens] 129 7e-30
gi|21735415 centromere protein B [Homo sapiens] 108 1e-23
gi|23312394 tigger transposable element derived 3 [Homo sapiens] 82 1e-15
gi|49619234 hypothetical protein LOC92806 [Homo sapiens] 46 8e-05
gi|46397390 pogo transposable element with ZNF domain isoform 1 ... 43 7e-04
gi|46397394 pogo transposable element with ZNF domain isoform 2 ... 43 7e-04
gi|224809419 Homer, neuronal immediate early gene, 3 isoform 3 [... 36 0.11
gi|224809414 Homer, neuronal immediate early gene, 3 isoform 1 [... 36 0.11
gi|224809410 Homer, neuronal immediate early gene, 3 isoform 2 [... 36 0.11
gi|224809408 Homer, neuronal immediate early gene, 3 isoform 1 [... 36 0.11
gi|118600967 shroom family member 4 [Homo sapiens] 34 0.31
gi|169162343 PREDICTED: hypothetical protein [Homo sapiens] 33 0.69
gi|113411617 PREDICTED: hypothetical protein [Homo sapiens] 33 0.69
gi|4826786 Shaw-related voltage-gated potassium channel protein ... 33 0.90
gi|163792201 Shaw-related voltage-gated potassium channel protei... 33 0.90
gi|47059046 dachsous 2 isoform 1 [Homo sapiens] 32 1.2
gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens] 32 1.5
gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo ... 32 1.5
gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo ... 32 1.5
>gi|117938295 jerky isoform b [Homo sapiens]
Length = 556
Score = 1132 bits (2928), Expect = 0.0
Identities = 556/556 (100%), Positives = 556/556 (100%)
Query: 1 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKA 60
MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKA
Sbjct: 1 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKA 60
Query: 61 QLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFY 120
QLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFY
Sbjct: 61 QLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFY 120
Query: 121 EQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSA 180
EQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSA
Sbjct: 121 EQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSA 180
Query: 181 EQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSG 240
EQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSG
Sbjct: 181 EQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSG 240
Query: 241 PRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDS 300
PRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDS
Sbjct: 241 PRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDS 300
Query: 301 SRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMN 360
SRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMN
Sbjct: 301 SRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMN 360
Query: 361 DAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILE 420
DAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILE
Sbjct: 361 DAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILE 420
Query: 421 LVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDPG 480
LVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDPG
Sbjct: 421 LVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDPG 480
Query: 481 EGEEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALRAVFRSQQQETVGLEDVVVTSP 540
EGEEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALRAVFRSQQQETVGLEDVVVTSP
Sbjct: 481 EGEEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALRAVFRSQQQETVGLEDVVVTSP 540
Query: 541 EELAIPKCCLEASTET 556
EELAIPKCCLEASTET
Sbjct: 541 EELAIPKCCLEASTET 556
>gi|117938293 jerky isoform a [Homo sapiens]
Length = 568
Score = 1075 bits (2781), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 1 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKA 60
MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKA
Sbjct: 1 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKA 60
Query: 61 QLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFY 120
QLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFY
Sbjct: 61 QLLRFFASSDSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFY 120
Query: 121 EQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSA 180
EQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSA
Sbjct: 121 EQMQLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSA 180
Query: 181 EQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSG 240
EQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSG
Sbjct: 181 EQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSG 240
Query: 241 PRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDS 300
PRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDS
Sbjct: 241 PRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDS 300
Query: 301 SRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMN 360
SRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMN
Sbjct: 301 SRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMN 360
Query: 361 DAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILE 420
DAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILE
Sbjct: 361 DAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILE 420
Query: 421 LVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDPG 480
LVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDPG
Sbjct: 421 LVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDPG 480
Query: 481 EGEEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALRAVFRSQQQ 527
EGEEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALRAVFRSQQQ
Sbjct: 481 EGEEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALRAVFRSQQQ 527
>gi|22547224 jerky homolog-like [Homo sapiens]
Length = 524
Score = 305 bits (781), Expect = 7e-83
Identities = 167/402 (41%), Positives = 241/402 (59%), Gaps = 17/402 (4%)
Query: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
KRKRVVLT+K+K+DI +LE G S K L Y +G +T+ DIR +K +++ + +SSDS
Sbjct: 4 KRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTS 63
Query: 74 ALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSG 133
L +R+++ E LDR + EWF +R++G P+SGP+ ++A+ F+ + + S
Sbjct: 64 LLAKRKSMKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYALGMDGDFNPSA 123
Query: 134 GWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFW 193
GWL RFK RH I++++ +E+ + D A E FC FR L EQ+YNADETGLFW
Sbjct: 124 GWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFW 183
Query: 194 RCLPN--PTPEGG-AVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKGIQ-- 248
+CLP+ +G VPG K ++R+T++ CANATG H+LK +GK PR+FK
Sbjct: 184 KCLPSRISVIKGKCTVPGHKSIEERVTIMCCANATGLHKLKLCVVGKAKKPRSFKSTDTL 243
Query: 249 HLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQEA 308
+LPV+Y +Q AW+D IF WF IFVP VRE+ R+ GL E KAVLLLD+S HP E
Sbjct: 244 NLPVSYFSQKGAWMDLSIFRQWFDKIFVPQVREYLRSKGLQE--KAVLLLDNSPTHPNEN 301
Query: 309 ELVSSN--VFTIFLPASVASLVQPMEQGI--------RRDFMRNFINPPVPLQGPHARYN 358
L S + +F +LP +VASL+QP +QG+ R ++N + L+ +
Sbjct: 302 VLRSDDGQIFAKYLPPNVASLIQPSDQGVIATMKRNYRAGLLQNNLEEGNDLKSFWKKLT 361
Query: 359 MNDAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEE 400
+ DA++ +A AWN V RAW+K+ P V E + E
Sbjct: 362 LLDALYEIAMAWNLVKPVTISRAWKKILPMVEEKESLDFDVE 403
>gi|23312392 tigger transposable element derived 2 [Homo sapiens]
Length = 525
Score = 289 bits (740), Expect = 4e-78
Identities = 155/402 (38%), Positives = 236/402 (58%), Gaps = 19/402 (4%)
Query: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
KRKRVVLT+K+K+DI +LE+G S K L Y +G ST+ DI+ +K +++ + SSD
Sbjct: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
Query: 74 ALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSG 133
+ +R+++ + E LDRV+ EWF ++++G+PVSG + ++AK F++ + + S
Sbjct: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASS 123
Query: 134 GWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFW 193
GWL RFK RHGI K K D AA +FC F+ + L EQ+Y AD+TGLFW
Sbjct: 124 GWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTGLFW 183
Query: 194 RCLPNPT---PEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKG--IQ 248
+CLP+ T + G + ++R+ ++ CANATG H+L +GK PRAFKG +
Sbjct: 184 KCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGTDLS 243
Query: 249 HLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQEA 308
+LPV Y +Q AW+++ +F WF FVP V++H ++ GL E KAVLLLD A P E
Sbjct: 244 NLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLE--KAVLLLDFPPARPNE- 300
Query: 309 ELVSSN---VFTIFLPASVASLVQPMEQGI--------RRDFMRNFINPPVPLQGPHARY 357
E++SS+ + +LP +V SL+QPM QG+ R ++ +++ +
Sbjct: 301 EMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNL 360
Query: 358 NMNDAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEE 399
+ DAI+ V+ AWN V S +AW+KL+P G + +E
Sbjct: 361 TVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDE 402
>gi|22325392 tigger transposable element derived 7 [Homo sapiens]
Length = 549
Score = 199 bits (505), Expect = 7e-51
Identities = 135/402 (33%), Positives = 200/402 (49%), Gaps = 31/402 (7%)
Query: 13 EKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
++ K L L+EK+ + +R+E G S K++M E+ + ST YDI+ +K +L F D
Sbjct: 3 KRGKYTTLNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFVLKQDMP 62
Query: 73 -KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVF 131
E+R+ K +D +Y W+ KRS GVPV G L A+ F T+
Sbjct: 63 LVGAEKRKRTTGAKYGDVDDAVYMWYQQKRSAGVPVRGVELQAAAERFARCFGRTD-FKA 121
Query: 132 SGGWLWRFKARHGIKKLDASSEK-QSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETG 190
S GWL+RF+ RH I E+ S+ + E F + E L Q+Y+ DET
Sbjct: 122 STGWLFRFRNRHAIGNRKGCGEQVLSSVSENVEPFRQKLSMIIKEEKLCLAQLYSGDETD 181
Query: 191 LFWRCLPNPTPEGG---AVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFK-G 246
LFW+ +P + +PG K K+RL+ +CANA G+H+LK + IGK P++ K
Sbjct: 182 LFWKSMPENSQASRKDICLPGKKINKERLSAFLCANADGTHKLKSIIIGKSKLPKSVKED 241
Query: 247 IQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGL---PEDSKAVLLLDSSRA 303
LPV YK + W +E+FS+WF FVP VR HF+ L ED +A+LLLDS A
Sbjct: 242 TSTLPVIYKPSKDVWFTRELFSEWFFQNFVPEVR-HFQLNVLRFHDEDVRALLLLDSCPA 300
Query: 304 HPQEAELVSSN--VFTIFLPASVASLVQPMEQGI----RRDFMRNFINPPVPL------- 350
HP L S + + +F P + ++L+QPM QG+ +R + + + +
Sbjct: 301 HPSSESLTSEDGRIKCMFFPHNTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDE 360
Query: 351 --QGPHA-----RYNMNDAIFSVACAWNAVPSHVFRRAWRKL 385
+G YN+ AIF+ A +W V AW L
Sbjct: 361 QEKGDKGVSKIKIYNIKSAIFNWAKSWEEVKQITIANAWENL 402
>gi|22209001 hypothetical protein LOC200765 [Homo sapiens]
Length = 591
Score = 170 bits (431), Expect = 3e-42
Identities = 118/432 (27%), Positives = 204/432 (47%), Gaps = 40/432 (9%)
Query: 7 AGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFF 66
A K E++ R LTL +K+++ E+G S+ + + + T+ + K + L+
Sbjct: 2 ASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKFLKEV 61
Query: 67 ASSD--SNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQ 124
S+ + + + +R +L + +++VL W + S +P+S ++ KA + M+
Sbjct: 62 KSATPMNTRMIRKRNSL----IADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMK 117
Query: 125 LT-------EPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHG 177
E S GW RFK R + A E SAD +AA + + E G
Sbjct: 118 AERGVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASADVEAAASYPEALAKIIDEGG 177
Query: 178 LSAEQVYNADETGLFWRCLPNPT---PEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLA 234
+ +Q++N DET +W+ +P+ T E +VPG K KDRLT+L+ ANA G +LKP+
Sbjct: 178 YTKQQIFNVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLTLLLGANAAGDFKLKPML 237
Query: 235 IGKCSGPRAFKGI--QHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDS 292
I PRA K LPV YK A + +F+ WF F P+V + +P
Sbjct: 238 IYHSENPRALKNYTKSTLPVLYKWNSKARMTAHLFTAWFTEYFKPTVETYCSEKKIP--F 295
Query: 293 KAVLLLDSSRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGI----RRDFMRNFINPPV 348
K +LL+D++ +HP+ + + IF+PA+ S++QPM+QG+ + ++RN + +
Sbjct: 296 KILLLIDNAPSHPRALMEIYEEINVIFMPANTTSILQPMDQGVISTFKSYYLRNTFHKAL 355
Query: 349 PLQGPHAR--------------YNMNDAIFSVACAWNAVPSHVFRRAWRKLWPSVA--FA 392
+ + DAI ++ +W V W+KL P++ +
Sbjct: 356 AAMDSDVSDGSGQSKLKTFWKGFTILDAIKNIRDSWEEVKLSTLTGVWKKLIPTLIDDYE 415
Query: 393 EGSSSEEELEAE 404
+S EE+ A+
Sbjct: 416 GFKTSVEEVSAD 427
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 159 bits (402), Expect = 6e-39
Identities = 153/577 (26%), Positives = 239/577 (41%), Gaps = 86/577 (14%)
Query: 17 RVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKALE 76
R ++K+K+ R++ GE + ++ +++ V TL + +L R+F +
Sbjct: 4 RKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKL-RWFLEQLGGEVGT 62
Query: 77 QRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVF--SGG 134
QR+ + E +DR +Y WFL R GVP+SGP++ +A+ F Q+ E C F S G
Sbjct: 63 QRKKMRLANEEEIDRAVYAWFLALRQHGVPLSGPLIQAQAEAFARQIYGPE-CTFKASHG 121
Query: 135 WLWRFKARHGIKKLDASSEK-----QSADHQAAEQFCAFFRSLA------------AEHG 177
W WR++ RHGI E A ++ A AE G
Sbjct: 122 WFWRWQKRHGISSQRFYGEAGPPAPSPAPGPPVKEEPALPSGAGPLPDRAPAPPPPAEGG 181
Query: 178 LSAEQVYNADETGLFWRCLPNPT-PEGGAVPGP-----KQGKDRLTVLMCANATGSHRLK 231
EQ+Y+A TGL+W+ LP P G PG + DR+TVL+ AN TGSH+LK
Sbjct: 182 YGDEQIYSASVTGLYWKLLPEQAAPPGAGDPGAGGCGRRWRGDRVTVLLAANLTGSHKLK 241
Query: 232 PLAIGKCSGPRAFK--GIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLP 289
PL IG+ P + + P +Y+ +AW+ + + WF FVP V+ + R L
Sbjct: 242 PLVIGRLPDPPSLRHHNQDKFPASYRYSPDAWLSRPLLRGWFFEEFVPGVKRYLRRSCLQ 301
Query: 290 EDSKAVLL---------------LDSSRA----------HPQEAELVSSNVFTIFLP--A 322
+ KAVLL LDS A P+E + V +FL +
Sbjct: 302 Q--KAVLLVAHPPCPSPAASMPALDSEDAPVRCRPEPLGPPEELQTPDGAVRVLFLSKGS 359
Query: 323 SVASLVQPMEQGI--------RRDFMRNFIN--PPVPLQGPHARYNMNDAIFSVACAWNA 372
S A + P+EQG+ +R+ +R ++ PL + + + D ++ +W+
Sbjct: 360 SRAHIPAPLEQGVVAAFKQLYKRELLRLAVSCASGSPLDFMRS-FMLKDMLYLAGLSWDL 418
Query: 373 VPSHVFRRAWRKLWPSVAFAEGSSSEEELE-AECFPVKPHNKSFAHILELVKEGSSCPGQ 431
V + R W L AF + + A+ H++ + + L C
Sbjct: 419 VQAGSIERCW-LLGLRAAFEPRPGEDSAGQPAQAEEAAEHSRVLSDLTHLAALAYKC--- 474
Query: 432 LRQRQAASW---------GVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDPGEG 482
L + A W RE G P A PA S D++ D G
Sbjct: 475 LAPEEVAEWLHLDDDGGPPEGCREEVGPALPPAAPPAPASLPSAMGGGEDEEEATDYGGT 534
Query: 483 EEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALR 519
+A + LR+ E Q +EVG LR ++
Sbjct: 535 SVPTAGEAVRGLETALRWLENQ---DPREVGPLRLVQ 568
>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
Length = 392
Score = 142 bits (357), Expect = 1e-33
Identities = 66/157 (42%), Positives = 105/157 (66%)
Query: 13 EKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
+KRK + L++ +K+ + +L+ G S K L +EY VGM+T+YD++ K +LL+F+A SD
Sbjct: 59 KKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
Query: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
++ R+TLH K E LDRVL EW +RSE +P++G +++++AK ++ ++++ C +S
Sbjct: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYS 178
Query: 133 GGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFF 169
GWL +FK RHGIK L K SA H+A E+F F
Sbjct: 179 TGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNF 215
>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
sapiens]
Length = 392
Score = 142 bits (357), Expect = 1e-33
Identities = 66/157 (42%), Positives = 105/157 (66%)
Query: 13 EKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
+KRK + L++ +K+ + +L+ G S K L +EY VGM+T+YD++ K +LL+F+A SD
Sbjct: 59 KKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
Query: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
++ R+TLH K E LDRVL EW +RSE +P++G +++++AK ++ ++++ C +S
Sbjct: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYS 178
Query: 133 GGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFF 169
GWL +FK RHGIK L K SA H+A E+F F
Sbjct: 179 TGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKF 215
>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
sapiens]
Length = 392
Score = 142 bits (357), Expect = 1e-33
Identities = 66/157 (42%), Positives = 105/157 (66%)
Query: 13 EKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
+KRK + L++ +K+ + +L+ G S K L +EY VGM+T+YD++ K +LL+F+A SD
Sbjct: 59 KKRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQ 118
Query: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
++ R+TLH K E LDRVL EW +RSE +P++G +++++AK ++ ++++ C +S
Sbjct: 119 ILMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYS 178
Query: 133 GGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFF 169
GWL +FK RHGIK L K SA H+A E+F F
Sbjct: 179 TGWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKF 215
>gi|22219477 tigger transposable element derived 4 [Homo sapiens]
Length = 512
Score = 139 bits (350), Expect = 7e-33
Identities = 106/384 (27%), Positives = 189/384 (49%), Gaps = 36/384 (9%)
Query: 15 RKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNKA 74
+K+ L+++EKIDI +E G+ + + EY + ++L I +K ++L F +S +
Sbjct: 16 KKKKSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAF---ESLRF 72
Query: 75 LEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTE-PCVFSG 133
+R+ L T L+ L W+ + VPV+GPML KA DF +++ + C S
Sbjct: 73 DPKRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGHNDFKC--SN 130
Query: 134 GWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEH--GLSAEQVYNADETGL 191
GWL RFK+R+G L ++ A + +++++ + + V+N ETGL
Sbjct: 131 GWLDRFKSRYG---LVFRAQPVEATGVPVDPSTVWYQNVLPYYLNDYHPKNVFNIKETGL 187
Query: 192 FWRCLPNPTP--EGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKGIQH 249
+R LP T +G K KDR+T+++ N GS +L L IGK P FKG++
Sbjct: 188 LYRMLPTNTFAFKGETCSVGKLCKDRITLVVGTNMDGSEKLPLLVIGKKRTPHCFKGLKS 247
Query: 250 LPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQEAE 309
LPV Y+A AW+ ++F W + E F+ + + V+ ++S AHP+
Sbjct: 248 LPVCYEANRMAWMTSDVFEQWMR-----KLDEEFQA----QQRRVVIFVESFPAHPEVKN 298
Query: 310 LVSSNVFTIFLPASVASLVQPMEQGI--------RRDFMRNFINPPVPLQG-PHARYNMN 360
L S + F P+ ++S M+QG+ R ++ F++ ++G +++
Sbjct: 299 LKS--IELAFFPSCLSSKCIAMKQGVIKSLKIKYRHCLIKKFLS---SVEGSKEFTFSLL 353
Query: 361 DAIFSVACAWNAVPSHVFRRAWRK 384
DA+ ++ W AV +++ +
Sbjct: 354 DAVDTLHLCWRAVTPETIVKSYEE 377
>gi|13569924 hypothetical protein LOC81789 [Homo sapiens]
Length = 521
Score = 129 bits (324), Expect = 7e-30
Identities = 96/395 (24%), Positives = 181/395 (45%), Gaps = 43/395 (10%)
Query: 10 SRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASS 69
++G K++R +L+EK+ + ++ G+ + + +E+ + STL + +F
Sbjct: 3 NKGNKKRRQ-FSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFLKDRT---KFEEKV 58
Query: 70 DSNKALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDF-----YEQMQ 124
QR+ + + + +D+ ++ WF ++ + V+G ++ +KA + Y+ Q
Sbjct: 59 REASVGPQRKRMRSALYDDIDKAVFAWFQEIHAKNILVTGSVIRKKALNLANMLGYDNFQ 118
Query: 125 LTEPCVFSGGWLWRFKARHGIKKLDASSEKQS------ADHQAAEQFCAFFRSLAAEHGL 178
S GWL RF+ RHGI E + E L A++
Sbjct: 119 A------SVGWLNRFRDRHGIALKAVCREDSDRLMNGLGIDKINEWHAGEIIKLIADY-- 170
Query: 179 SAEQVYNADETGLFWRCLPNPT--PEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIG 236
S + ++NADETG+F++ LP T +G G K+ K RLT L C NA+G+ +++PL +G
Sbjct: 171 SPDDIFNADETGVFFQLLPQHTLAAKGDHCRGGKKAKQRLTALFCCNASGTEKMRPLIVG 230
Query: 237 KCSGPRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVL 296
+ + P K I LP Y+A AW+ +++F++W + R + + +L
Sbjct: 231 RSASPHCLKNIHSLPCDYRANQWAWMTRDLFNEWLMQVDARMKR---------AERRILL 281
Query: 297 LLDSSRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGI-------RRDFMRNFINPPVP 349
L+D+ AH L + +LP++ +++QP+ GI + + I +
Sbjct: 282 LIDNCSAHNMLPHL--ERIQVGYLPSNCTAVLQPLNLGIIHTMKVLYQSHLLKQILLKLN 339
Query: 350 LQGPHARYNMNDAIFSVACAWNAVPSHVFRRAWRK 384
++ AI +A AW +V + W+K
Sbjct: 340 SSEDQEEVDIKQAIDMIAAAWWSVKPSTVVKCWQK 374
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 108 bits (270), Expect = 1e-23
Identities = 122/432 (28%), Positives = 183/432 (42%), Gaps = 63/432 (14%)
Query: 16 KRVVLTLKEKIDICTRLEKG-ESRKA-LMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
KR LT +EK I +E+ + RK + + +N+ STL I +K +L +
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA--SERKYGV 61
Query: 74 ALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSG 133
A R+T + L+ +L WF R+ G+PV G +L EKA E++ + + S
Sbjct: 62 ASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDD-FTASN 120
Query: 134 GWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAA------------------- 174
GWL RF+ RHG+ + S ++ AA + A S AA
Sbjct: 121 GWLDRFRRRHGV--VSCSGVARARARNAAPRTPAAPASPAAVPSEGSGGSTTGWRAREEQ 178
Query: 175 ----EHGLSAEQVYNADETGLFWRCLPNPTPE-GGAVPGPKQGKDRLTVLMCANATGSHR 229
G +++ V++A ET L++ LP+ G P+Q RL+VL+CANA GS +
Sbjct: 179 PPSVAEGYASQDVFSATETSLWYDFLPDQAAGLCGGDGRPRQATQRLSVLLCANADGSEK 238
Query: 230 LKPLAIGKCSGPRAFKGIQHLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLP 289
L PL GK + PRA G LP Y A V + + + + E R + L
Sbjct: 239 LPPLVAGKSAKPRA--GQAGLPCDYTANSKGGVTTQALAKYLKALDTRMAAESRRVLLLA 296
Query: 290 EDSKAVLLLDSSRAHPQEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNF-----I 344
A L S H Q A F P V P+E+G+ + ++ +
Sbjct: 297 GRLAAQSLDTSGLRHVQLA----------FFPPGT---VHPLERGVVQQVKGHYRQAMLL 343
Query: 345 NPPVPLQGPH---ARYNMNDAIFSVACAWNAV-PSHV---FRRAWRKLWPSVAF-----A 392
L+G + + +A+ VA AW AV PS + FR A P+ +
Sbjct: 344 KAMAALEGQDPSGLQLGLTEALHFVAAAWQAVEPSDIAACFREAGFGGGPNATITTSLKS 403
Query: 393 EGSSSEEELEAE 404
EG EEE E E
Sbjct: 404 EGEEEEEEEEEE 415
>gi|23312394 tigger transposable element derived 3 [Homo sapiens]
Length = 471
Score = 82.4 bits (202), Expect = 1e-15
Identities = 120/478 (25%), Positives = 196/478 (41%), Gaps = 68/478 (14%)
Query: 14 KRKRVVLTLKEKIDICTRLEKGE-SRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSN 72
K+K L+L EKI + L++ + S+ + + + V + I +K +LL + S +N
Sbjct: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTAN 65
Query: 73 KALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFS 132
+ +++R K +D L W+ R++ V+GPML+ KAK+ + M + V S
Sbjct: 66 RERKRKRE---SKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMG--QDFVPS 120
Query: 133 GGWLWRFKARH----GIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADE 188
GWL R+K R+ G + + A S SL S E V+ E
Sbjct: 121 IGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLK---DFSPEDVFGCAE 177
Query: 189 TGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKGI- 247
L +R AVPG D++ VL+CAN+ G+ + + L G + PR F GI
Sbjct: 178 LPLLYR----------AVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIR 227
Query: 248 -QHLPVAYKAQ-GNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHP 305
+ LP +Y G W+ +W + + R +G + + V LL ++R
Sbjct: 228 SEALPASYHPDLGIPWL------EW--------LAQFDRDMG--QQGRQVALLLAARVVE 271
Query: 306 QEAELVSSNVFTIFLPASVASLVQPMEQGIRRDFMRNFINPPVPLQGPHARYNMNDAIFS 365
+ A L LP + +S P+ + R F ++ + L G A S
Sbjct: 272 ELAGL-PGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRH---RLLGKLAAIQSERDGTS 327
Query: 366 VACAWNAV----PSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFPVKPHNKSFAHILEL 421
+A A + HV AW K+ P + F+ S +E L P H S
Sbjct: 328 LAEAGAGITVLDALHVASAAWAKVPPQLIFS--SFIQEGLAPGKTPPSSHKTS------- 378
Query: 422 VKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQDGGGDP 479
E PG L + + + + EG P + E+ E K D++G +P
Sbjct: 379 --EMPPVPGGLSLEEFSRF----VDLEGEEPRSGVCKEEIGTEDE---KGDREGAFEP 427
>gi|49619234 hypothetical protein LOC92806 [Homo sapiens]
Length = 187
Score = 46.2 bits (108), Expect = 8e-05
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
KR+R +TL K+++ R E GE + + ++ +ST+ IR K ++ +S +
Sbjct: 16 KRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKA--SSQIATP 73
Query: 74 ALEQRRTLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQ-------L 125
R T H + +E ++++L W + +S ++ EKA+ ++ +Q
Sbjct: 74 LRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE--FDDLQREHGEGSQ 131
Query: 126 TEPCVFSGGWLWRFKARHGIKKLDASSEKQS 156
TE S GWL RFK H + +S S
Sbjct: 132 TERFHASQGWLVRFKECHCLPHFKMNSAAPS 162
>gi|46397390 pogo transposable element with ZNF domain isoform 1 [Homo
sapiens]
Length = 1410
Score = 43.1 bits (100), Expect = 7e-04
Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 28/264 (10%)
Query: 93 LYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSGGWLWRFKARHGIKKLDASS 152
L EW L +R + +PV+ L +KA ++ S W RF RH + +
Sbjct: 1031 LAEWVLTQREQQLPVNEETLFQKATKIGRSLE--GGFKISYEWAVRFMLRHHLTPHARRA 1088
Query: 153 EKQSADHQAAEQ---FCAFFRSLAAEHGLSAEQVYNADETGLF--WRCLPNPTPEGGAVP 207
+ AE F F + L + DE LF L + + A+
Sbjct: 1089 VAHTLPKDVAENAGLFIDFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQ 1148
Query: 208 GPKQGKDRLTVLMCANATGSHRLKPLAI---GKCSGPRAFKGIQHLPVAYKAQGNAWVDK 264
G+ V++ A G+ + P + G+ P + +A+ + + D
Sbjct: 1149 TVGTGEPWCDVVLAILADGT--VLPTLVFYRGQMDQPANMPD----SILLEAKESGYSDD 1202
Query: 265 EIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQE---AELVSSNVFTIFLP 321
EI W ++ ++H + SK +L++D R H E A L +S+ +P
Sbjct: 1203 EIMELWSTRVW----QKHTAC----QRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVP 1254
Query: 322 ASVASLVQPMEQGIRRDFMRNFIN 345
A +S +QP++ I+R ++NF++
Sbjct: 1255 AGCSSKIQPLDVCIKRT-VKNFLH 1277
>gi|46397394 pogo transposable element with ZNF domain isoform 2 [Homo
sapiens]
Length = 1357
Score = 43.1 bits (100), Expect = 7e-04
Identities = 59/264 (22%), Positives = 106/264 (40%), Gaps = 28/264 (10%)
Query: 93 LYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSGGWLWRFKARHGIKKLDASS 152
L EW L +R + +PV+ L +KA ++ S W RF RH + +
Sbjct: 978 LAEWVLTQREQQLPVNEETLFQKATKIGRSLE--GGFKISYEWAVRFMLRHHLTPHARRA 1035
Query: 153 EKQSADHQAAEQ---FCAFFRSLAAEHGLSAEQVYNADETGLF--WRCLPNPTPEGGAVP 207
+ AE F F + L + DE LF L + + A+
Sbjct: 1036 VAHTLPKDVAENAGLFIDFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQ 1095
Query: 208 GPKQGKDRLTVLMCANATGSHRLKPLAI---GKCSGPRAFKGIQHLPVAYKAQGNAWVDK 264
G+ V++ A G+ + P + G+ P + +A+ + + D
Sbjct: 1096 TVGTGEPWCDVVLAILADGT--VLPTLVFYRGQMDQPANMPD----SILLEAKESGYSDD 1149
Query: 265 EIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQE---AELVSSNVFTIFLP 321
EI W ++ ++H + SK +L++D R H E A L +S+ +P
Sbjct: 1150 EIMELWSTRVW----QKHTAC----QRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVP 1201
Query: 322 ASVASLVQPMEQGIRRDFMRNFIN 345
A +S +QP++ I+R ++NF++
Sbjct: 1202 AGCSSKIQPLDVCIKRT-VKNFLH 1224
>gi|224809419 Homer, neuronal immediate early gene, 3 isoform 3
[Homo sapiens]
Length = 325
Score = 35.8 bits (81), Expect = 0.11
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 392 AEGSSSEEELEAECFPVKPHNKSFAHILELVKEGSSCPGQLRQRQAASWGVAGREAEGGR 451
+EGS E + EAE F ++ N A L +E ++ Q RQ+ A + AE R
Sbjct: 140 SEGSVGEVQWEAEFFALQDSNNKLAGAL---REANAAAAQWRQQLEA------QRAEAER 190
Query: 452 PPAATSPAEVVWSSEKTPKADQDGGGDPGEGEEVAWEQAAVAFDAVLRFAERQ-PCFSAQ 510
+ E +SE TP +++G G Q+ +A+++ +++ +Q
Sbjct: 191 LRQRVAELEAQAASEVTPTGEKEGLGQ---------GQSLEQLEALVQTKDQEIQTLKSQ 241
Query: 511 EVGQLRALRAVFRSQQQETV 530
G AL A R + Q+ V
Sbjct: 242 TGGPREALEAAEREETQQKV 261
>gi|224809414 Homer, neuronal immediate early gene, 3 isoform 1
[Homo sapiens]
Length = 361
Score = 35.8 bits (81), Expect = 0.11
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 392 AEGSSSEEELEAECFPVKPHNKSFAHILELVKEGSSCPGQLRQRQAASWGVAGREAEGGR 451
+EGS E + EAE F ++ N A L +E ++ Q RQ+ A + AE R
Sbjct: 176 SEGSVGEVQWEAEFFALQDSNNKLAGAL---REANAAAAQWRQQLEA------QRAEAER 226
Query: 452 PPAATSPAEVVWSSEKTPKADQDGGGDPGEGEEVAWEQAAVAFDAVLRFAERQ-PCFSAQ 510
+ E +SE TP +++G G Q+ +A+++ +++ +Q
Sbjct: 227 LRQRVAELEAQAASEVTPTGEKEGLGQ---------GQSLEQLEALVQTKDQEIQTLKSQ 277
Query: 511 EVGQLRALRAVFRSQQQETV 530
G AL A R + Q+ V
Sbjct: 278 TGGPREALEAAEREETQQKV 297
>gi|224809410 Homer, neuronal immediate early gene, 3 isoform 2
[Homo sapiens]
Length = 358
Score = 35.8 bits (81), Expect = 0.11
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 392 AEGSSSEEELEAECFPVKPHNKSFAHILELVKEGSSCPGQLRQRQAASWGVAGREAEGGR 451
+EGS E + EAE F ++ N A L +E ++ Q RQ+ A + AE R
Sbjct: 176 SEGSVGEVQWEAEFFALQDSNNKLAGAL---REANAAAAQWRQQLEA------QRAEAER 226
Query: 452 PPAATSPAEVVWSSEKTPKADQDGGGDPGEGEEVAWEQAAVAFDAVLRFAERQ-PCFSAQ 510
+ E +SE TP +++G G Q+ +A+++ +++ +Q
Sbjct: 227 LRQRVAELEAQAASEVTPTGEKEGLGQ---------GQSLEQLEALVQTKDQEIQTLKSQ 277
Query: 511 EVGQLRALRAVFRSQQQETV 530
G AL A R + Q+ V
Sbjct: 278 TGGPREALEAAEREETQQKV 297
>gi|224809408 Homer, neuronal immediate early gene, 3 isoform 1
[Homo sapiens]
Length = 361
Score = 35.8 bits (81), Expect = 0.11
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 392 AEGSSSEEELEAECFPVKPHNKSFAHILELVKEGSSCPGQLRQRQAASWGVAGREAEGGR 451
+EGS E + EAE F ++ N A L +E ++ Q RQ+ A + AE R
Sbjct: 176 SEGSVGEVQWEAEFFALQDSNNKLAGAL---REANAAAAQWRQQLEA------QRAEAER 226
Query: 452 PPAATSPAEVVWSSEKTPKADQDGGGDPGEGEEVAWEQAAVAFDAVLRFAERQ-PCFSAQ 510
+ E +SE TP +++G G Q+ +A+++ +++ +Q
Sbjct: 227 LRQRVAELEAQAASEVTPTGEKEGLGQ---------GQSLEQLEALVQTKDQEIQTLKSQ 277
Query: 511 EVGQLRALRAVFRSQQQETV 530
G AL A R + Q+ V
Sbjct: 278 TGGPREALEAAEREETQQKV 297
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 34.3 bits (77), Expect = 0.31
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 395 SSSEEELEAECF-PVKPHNKSFAHILELVKEGSSCPGQLRQRQAASWGVAGREAEGGRP- 452
++S L + C P P +K F + L S C Q + + G+ GR + G RP
Sbjct: 633 TASNTSLLSSCKKPPSPRDKLFNKSMMLRARSSECLSQAPESHESRTGLEGRISPGQRPG 692
Query: 453 --------------PAATSPAEV-----------VWSSEKTPK----ADQDGGGDPGEGE 483
P+++ P + WS E + A +G +PG+ +
Sbjct: 693 QSSLGLNTWWKAPDPSSSDPEKAHAHCGVRGGHWRWSPEHNSQPLVAAAMEGPSNPGDNK 752
Query: 484 EVAWEQAAVAFDAV-LRFAERQPCF 507
E+ A DA+ L FA+R+ F
Sbjct: 753 ELKASTAQAGEDAILLPFADRRKFF 777
>gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 33.1 bits (74), Expect = 0.69
Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 10/133 (7%)
Query: 348 VPLQGPHARYNMNDAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFP 407
+P+Q R + A+ V+ W + + WP S+S L AE P
Sbjct: 55 LPVQAGSGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPD------SASSRTLSAESTP 108
Query: 408 VKPHNKSFAHILELVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEK 467
PH +L S P L ++ G A +A GRP E ++E+
Sbjct: 109 PHPHKL----VLAPFAASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAER 164
Query: 468 TPKADQDGGGDPG 480
+A + PG
Sbjct: 165 AREARSEQPTSPG 177
>gi|113411617 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 33.1 bits (74), Expect = 0.69
Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 10/133 (7%)
Query: 348 VPLQGPHARYNMNDAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEELEAECFP 407
+P+Q R + A+ V+ W + + WP S+S L AE P
Sbjct: 55 LPVQAGSGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPD------SASSRTLSAESTP 108
Query: 408 VKPHNKSFAHILELVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEK 467
PH +L S P L ++ G A +A GRP E ++E+
Sbjct: 109 PHPHKL----VLAPFAASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAER 164
Query: 468 TPKADQDGGGDPG 480
+A + PG
Sbjct: 165 AREARSEQPTSPG 177
>gi|4826786 Shaw-related voltage-gated potassium channel protein 1
isoform B [Homo sapiens]
Length = 511
Score = 32.7 bits (73), Expect = 0.90
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 24/93 (25%)
Query: 411 HNKSFAHILELVKEGS-SCP----GQLRQRQAASWGV--------------AGREAEGGR 451
H FAHIL + G CP G L + + A WG+ R+AE
Sbjct: 60 HPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEAL 119
Query: 452 PPAATSPAEVVWSSEKTPKADQDGGGDPGEGEE 484
+P + AD DG GD G+GE+
Sbjct: 120 DSFGGAPLD-----NSADDADADGPGDSGDGED 147
>gi|163792201 Shaw-related voltage-gated potassium channel protein 1
isoform A [Homo sapiens]
Length = 585
Score = 32.7 bits (73), Expect = 0.90
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 24/93 (25%)
Query: 411 HNKSFAHILELVKEGS-SCP----GQLRQRQAASWGV--------------AGREAEGGR 451
H FAHIL + G CP G L + + A WG+ R+AE
Sbjct: 60 HPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEAL 119
Query: 452 PPAATSPAEVVWSSEKTPKADQDGGGDPGEGEE 484
+P + AD DG GD G+GE+
Sbjct: 120 DSFGGAPLD-----NSADDADADGPGDSGDGED 147
>gi|47059046 dachsous 2 isoform 1 [Homo sapiens]
Length = 2916
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 132 SGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAE 175
S GW RFK R + L E SAD +AA ++ A + E
Sbjct: 283 SRGWFMRFKGRRHLHYLKVQDEAASADGEAAARYVANLAKILGE 326
>gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens]
Length = 86
Score = 32.0 bits (71), Expect = 1.5
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFF--ASSDSNKALEQ 77
+ L EK+ + +L+ G S A+ E NV ST+ I+ + ++ R A+ DS +
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 78 RRTLHTPKLEHLDRVLYEW 96
R K+E +++ L W
Sbjct: 61 VRDEAMTKMEKMEKRLNLW 79
>gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo
sapiens]
Length = 86
Score = 32.0 bits (71), Expect = 1.5
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFF--ASSDSNKALEQ 77
+ L EK+ + +L+ G S A+ E NV ST+ I+ + ++ R A+ DS +
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 78 RRTLHTPKLEHLDRVLYEW 96
R K+E +++ L W
Sbjct: 61 VRDEAMTKMEKMEKRLNLW 79
>gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo
sapiens]
Length = 86
Score = 32.0 bits (71), Expect = 1.5
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 20 LTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFF--ASSDSNKALEQ 77
+ L EK+ + +L+ G S A+ E NV ST+ I+ + ++ R A+ DS +
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 78 RRTLHTPKLEHLDRVLYEW 96
R K+E +++ L W
Sbjct: 61 VRDEAMTKMEKMEKRLNLW 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,213,315
Number of Sequences: 37866
Number of extensions: 1114423
Number of successful extensions: 3653
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3583
Number of HSP's gapped (non-prelim): 58
length of query: 556
length of database: 18,247,518
effective HSP length: 107
effective length of query: 449
effective length of database: 14,195,856
effective search space: 6373939344
effective search space used: 6373939344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.