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Search of human proteins with 239749355
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo
sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo ... 368 e-102
gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo ... 318 2e-87
gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo ... 130 5e-31
gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo ... 47 6e-06
gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo ... 47 6e-06
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens] 33 0.15
gi|16933565 protocadherin 21 precursor [Homo sapiens] 31 0.43
gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens] 30 1.3
gi|161019170 mucin 5AC [Homo sapiens] 29 2.1
gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo ... 29 2.1
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 29 2.1
gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens] 29 2.1
gi|157426823 NK2 homeobox 4 [Homo sapiens] 28 2.8
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 28 2.8
gi|169208749 PREDICTED: similar to hCG2045005 [Homo sapiens] 28 3.7
gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo ... 28 3.7
gi|169208130 PREDICTED: similar to hCG2045005 [Homo sapiens] 28 3.7
gi|148886654 polydom [Homo sapiens] 28 3.7
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 27 6.2
gi|41327754 ankyrin repeat domain 3 [Homo sapiens] 27 6.2
gi|7706687 Enah/Vasp-like [Homo sapiens] 27 6.2
gi|149158711 hypothetical protein LOC56673 [Homo sapiens] 27 6.2
gi|134244587 endothelial differentiation, sphingolipid G-protein... 27 8.1
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 27 8.1
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 27 8.1
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens] 27 8.1
gi|215598824 ankyrin repeat and SOCS box-containing 10 isoform 2... 27 8.1
gi|215598819 ankyrin repeat and SOCS box-containing 10 isoform 1... 27 8.1
gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3... 27 8.1
gi|55741675 hypothetical protein LOC22889 [Homo sapiens] 27 8.1
>gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo
sapiens]
Length = 167
Score = 368 bits (945), Expect = e-102
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MCFMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGW 60
MCFMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGW
Sbjct: 1 MCFMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGW 60
Query: 61 PCLHVSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSVGWNW 120
PCLHVSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSVGWNW
Sbjct: 61 PCLHVSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSVGWNW 120
Query: 121 VGHLPCLPTSLPPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG 167
VGHLPCLPTSLPPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG
Sbjct: 121 VGHLPCLPTSLPPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG 167
>gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo
sapiens]
Length = 167
Score = 318 bits (814), Expect = 2e-87
Identities = 147/167 (88%), Positives = 153/167 (91%)
Query: 1 MCFMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGW 60
MC +SSSCSK R PTC GSTF RGG ENFPPFPTYALHSSG CLTNYK ATADT SSGW
Sbjct: 1 MCSVSSSCSKYRLPTCTGSTFSRGGCENFPPFPTYALHSSGTCLTNYKSATADTPRSSGW 60
Query: 61 PCLHVSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSVGWNW 120
PCLHVSLKD QGNIYISAERASACVVQLCSNGNPETQ+LV+TPCLG+PALQVPSVG NW
Sbjct: 61 PCLHVSLKDLRQGNIYISAERASACVVQLCSNGNPETQILVKTPCLGEPALQVPSVGVNW 120
Query: 121 VGHLPCLPTSLPPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG 167
VGHLPCLPTSLPPGILDPEN+GDVVGNRQVLCRKPRCHPN LCS+GG
Sbjct: 121 VGHLPCLPTSLPPGILDPENKGDVVGNRQVLCRKPRCHPNPLCSIGG 167
>gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo
sapiens]
Length = 167
Score = 130 bits (327), Expect = 5e-31
Identities = 85/174 (48%), Positives = 96/174 (55%), Gaps = 14/174 (8%)
Query: 1 MCFMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTN--YKGATADTRHSS 58
MC +SSSCSKDRPPTCAGSTF GW PT + H A L +K RH++
Sbjct: 1 MCSVSSSCSKDRPPTCAGSTF---GWAGMRELPTIS-HLCTAFLRRLPHKLQERHGRHTT 56
Query: 59 GWPCLHVS--LKDRHQGN-IYISAERASAC--VVQLCSNGNPETQMLVQTPCLGQPALQV 113
S L+ G +Y+ E S C V + NP+ + G
Sbjct: 57 FQRVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSC--- 113
Query: 114 PSVGWNWVGHLPCLPTSLPPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG 167
P G GHLPCLPTSL PGILD ENQGDVVGNRQVLCRKPRCHPN LCSLGG
Sbjct: 114 PQHGSELGGHLPCLPTSLLPGILDTENQGDVVGNRQVLCRKPRCHPNPLCSLGG 167
>gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo
sapiens]
Length = 156
Score = 47.4 bits (111), Expect = 6e-06
Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 3 FMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGWPC 62
FMSSSCSKD PPTCAGSTF +G P LH++ +K +RH++
Sbjct: 21 FMSSSCSKDHPPTCAGSTFGQGRMRELPTIS--HLHTAFLRSLPHKLQERHSRHNTFQQV 78
Query: 63 LHVS--LKDRHQGN-IYISAERASAC--VVQLCSNGNPETQMLVQTPCLGQPALQVPSVG 117
S L+ G +Y+ E S C V + NP+ V L Q A
Sbjct: 79 AMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPD----VGPNTLSQGAGSAGPQR 134
Query: 118 WNWVGHLPCLPTSLP 132
+ +G P LP +P
Sbjct: 135 GSELGGPPALPAHIP 149
>gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo
sapiens]
Length = 156
Score = 47.4 bits (111), Expect = 6e-06
Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 3 FMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGWPC 62
FMSSSCSKD PPTCAGSTF +G P LH++ +K +RH++
Sbjct: 21 FMSSSCSKDHPPTCAGSTFGQGRMRELPTIS--HLHTAFLRSLPHKLQERHSRHNTFQQV 78
Query: 63 LHVS--LKDRHQGN-IYISAERASAC--VVQLCSNGNPETQMLVQTPCLGQPALQVPSVG 117
S L+ G +Y+ E S C V + NP+ V L Q A
Sbjct: 79 AMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPD----VGPNTLSQGAGSAGPQR 134
Query: 118 WNWVGHLPCLPTSLP 132
+ +G P LP +P
Sbjct: 135 GSELGGPPALPVHIP 149
>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
Length = 644
Score = 32.7 bits (73), Expect = 0.15
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 39 SSGACLTNYKGATADTRHSSGWPCLHVSLKDRHQGNIYISAERASACVVQLCSNGNPETQ 98
S G+ + GA A HS PCL SL++ + +S+ER S S GNP +
Sbjct: 112 SRGSVQSEGPGAPA---HSCSPPCLSTSLQEIPKSRGVLSSERGSP-----SSGGNPLSG 163
Query: 99 MLVQTPCLGQPALQVPSVGWNWVGHLPCLPTSLPP 133
+ +P L V G P LP+ LPP
Sbjct: 164 VASSSPNLPHRDAAV-------AGSSPRLPSLLPP 191
>gi|16933565 protocadherin 21 precursor [Homo sapiens]
Length = 859
Score = 31.2 bits (69), Expect = 0.43
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 90 CSNGNPETQMLVQTPCLGQPALQVPSVG-WNWV-----GHLPCLPTSLPPGILDPENQGD 143
C+N +PE+ +L + P L P PS G W G L PT PP P+ G
Sbjct: 778 CNNNSPESSLLPRAPALPPPPSVAPSTGAAQWTVPTVSGSLTPQPTQPPP---KPKTMGS 834
Query: 144 VV 145
V
Sbjct: 835 PV 836
>gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens]
Length = 728
Score = 29.6 bits (65), Expect = 1.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 132 PPGILDPENQGDVVGNRQVLCRKPRCHPNTLCSLGG 167
P ++ PE++ + + LCR+P CH LC LGG
Sbjct: 207 PKILMCPEHETERINMYCELCRRPVCH---LCKLGG 239
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.9 bits (63), Expect = 2.1
Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 28 NFPPFPTYALHSSGACLTNYKGATADTRHSSGWPCLHVSLKDRHQGNIYISAERASACVV 87
N P HS AC Y+ T +Q IY + + AC++
Sbjct: 1937 NCTPSGIQCAHSLEACTCTYEDRTYS-----------------YQDVIYNTTDGLGACLI 1979
Query: 88 QLCSNGNPETQMLVQTPCLGQPALQVPSVGWNWVGH---LPCLPTS 130
+C G+ T + C G PA + WV H P LP S
Sbjct: 1980 AIC--GSNGTIIRKAVACPGTPATTPFTFTTAWVPHSTTSPALPVS 2023
>gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo
sapiens]
Length = 284
Score = 28.9 bits (63), Expect = 2.1
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 9 SKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGWPCLHVSLK 68
++ RP GST RGG E P T L+SS + + + R +G P +
Sbjct: 157 ARGRPTPTRGSTRQRGGAERRSPGHTVTLYSSPGTV----DSESPGRDGAGSPTI----- 207
Query: 69 DRHQGNIYISAERASACV-VQLCSNGNPETQMLVQTPCLGQPALQVPSVGWNWVGHLP 125
++ +S+C V+ G+ E +L C P + P+ W V LP
Sbjct: 208 ---LARAGVAWTVSSSCYRVEGALFGSCEVLLLPPGACTSPPGSEPPTQDWLRVRDLP 262
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.9 bits (63), Expect = 2.1
Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 28 NFPPFPTYALHSSGACLTNYKGATADTRHSSGWPCLHVSLKDRHQGNIYISAERASACVV 87
N P HS AC Y+ T +Q IY + + AC++
Sbjct: 1247 NCTPSGIQCAHSLEACTCTYEDRTYS-----------------YQDVIYNTTDGLGACLI 1289
Query: 88 QLCSNGNPETQMLVQTPCLGQPALQVPSVGWNWVGH---LPCLPTS 130
+C G+ T + C G PA + WV H P LP S
Sbjct: 1290 AIC--GSNGTIIRKAVACPGTPATTPFTFTTAWVPHSTTSPALPVS 1333
>gi|44680141 BTB (POZ) domain containing 5 [Homo sapiens]
Length = 571
Score = 28.9 bits (63), Expect = 2.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 145 VGNRQVLCRKPRCHPNTLCSLGG 167
+ ++ VL +PRC P LC++GG
Sbjct: 268 LSHQTVLMTRPRCAPKVLCAVGG 290
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 14 PTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSS 58
P A ++ GG N P Y G T + GA D R+SS
Sbjct: 103 PHGAMGSYCNGGLGNMGELPAYTDGMRGGAATGWYGANPDPRYSS 147
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 104 PCLGQPALQVPSVGWNWVGHLPCLPTSLPPGILDPENQGDVV 145
PC G P L VP P LP PP I+ P+NQ V+
Sbjct: 503 PCAGPPGLPVP--------QSPPLPPG-PPEIVGPQNQAGVL 535
>gi|169208749 PREDICTED: similar to hCG2045005 [Homo sapiens]
Length = 255
Score = 28.1 bits (61), Expect = 3.7
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 31 PFPTYALHSSGACLTNYKGATADTRHSSGW--PCLHVSLKDRHQGNIYISAE-----RAS 83
P PT+ S L + A D GW P +D ++G + AE R
Sbjct: 48 PLPTHLFFS---LLQSRHRAATDYTMMGGWTPPSGAGGAEDVNKGAVQAEAEIMVRSRGR 104
Query: 84 ACVVQLCSNGNPETQMLVQTPCL 106
A VQLC +PET+ + ++ CL
Sbjct: 105 ARRVQLCPEASPETEKMPES-CL 126
>gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo
sapiens]
Length = 485
Score = 28.1 bits (61), Expect = 3.7
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 95 PETQMLVQTPCLGQPALQVPSVGWNWVGHLPCLPTSLPPGILDPENQGDVV--------G 146
P T L+ + G P+ Q +G + P L T+LP + PE G+ + G
Sbjct: 206 PPTGSLISSSSPGPPS-QALQLGGDRYHRAPSLCTALPKAMRRPEKTGEGIPATTRSAPG 264
Query: 147 NRQVLCRK--------------PRCHPNTLCSLGG 167
+R R+ PR P+TLCS G
Sbjct: 265 SRSARRREDPRAPGAHRACSSCPRDSPSTLCSAFG 299
>gi|169208130 PREDICTED: similar to hCG2045005 [Homo sapiens]
Length = 255
Score = 28.1 bits (61), Expect = 3.7
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 31 PFPTYALHSSGACLTNYKGATADTRHSSGW--PCLHVSLKDRHQGNIYISAE-----RAS 83
P PT+ S L + A D GW P +D ++G + AE R
Sbjct: 48 PLPTHLFFS---LLQSRHRAATDYTMMGGWTPPSGAGGAEDVNKGAVQAEAEIMVRSRGR 104
Query: 84 ACVVQLCSNGNPETQMLVQTPCL 106
A VQLC +PET+ + ++ CL
Sbjct: 105 ARRVQLCPEASPETEKMPES-CL 126
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 28.1 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 18 GSTFVRGGWENFPPFPTYALH--SSGACLTN 46
G +F+ GG + FP Y LH SS CL+N
Sbjct: 2962 GFSFIHGGHIQYQCFPGYKLHGNSSRRCLSN 2992
>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor
[Homo sapiens]
Length = 1233
Score = 27.3 bits (59), Expect = 6.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 122 GHLPCLPTSLPPGILDPENQGDVVGNRQVLCRK 154
G PCLPT PP P G G R L R+
Sbjct: 941 GPSPCLPTPDPPPEPSPTGWGPPDGGRAALVRR 973
>gi|41327754 ankyrin repeat domain 3 [Homo sapiens]
Length = 784
Score = 27.3 bits (59), Expect = 6.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 38 HSSGACLTNYKGATADTRHSSGWPCLHVSLKDRHQGNIYISAE 80
H+S A L ++GA + S G+ LH++ ++ H + + E
Sbjct: 649 HTSTARLLLHRGAGKEAMTSDGYTALHLAARNGHLATVKLLVE 691
>gi|7706687 Enah/Vasp-like [Homo sapiens]
Length = 418
Score = 27.3 bits (59), Expect = 6.2
Identities = 18/66 (27%), Positives = 25/66 (37%)
Query: 69 DRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSVGWNWVGHLPCLP 128
++HQ S ER ++ + G+P + C G P P V G P P
Sbjct: 145 EQHQQQRQESLERRTSATGPILPPGHPSSAASAPVSCSGPPPPPPPPVPPPPTGATPPPP 204
Query: 129 TSLPPG 134
LP G
Sbjct: 205 PPLPAG 210
>gi|149158711 hypothetical protein LOC56673 [Homo sapiens]
Length = 467
Score = 27.3 bits (59), Expect = 6.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 16 CAGSTFVRG-GWENF-PPFP---TYALHSSGACLTNYKGATADTRHSSGWPCLHVS 66
C+ +T ++ GW+ PP+ TY LT +K RH+S PCLHV+
Sbjct: 15 CSVATSLKAPGWDGAAPPWDLSFTYPFALQAPWLTGHKPLA---RHASSCPCLHVA 67
>gi|134244587 endothelial differentiation, sphingolipid
G-protein-coupled receptor, 5 [Homo sapiens]
Length = 353
Score = 26.9 bits (58), Expect = 8.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 113 VPSVGWNWVGHLPCLPTSLP 132
+P +GWN +GHL T LP
Sbjct: 165 LPILGWNCLGHLEACSTVLP 184
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 26.9 bits (58), Expect = 8.1
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 5 SSSCSKDRPPTCAGSTFVRGGWENFPPFPTYAL--HSSGAC-LTNYKGATADTRHSSGW- 60
SS + PP +G++F GG P YAL ++G + A+ T +GW
Sbjct: 937 SSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWN 996
Query: 61 --PCLH-VSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSV- 116
P L+ V K + N S + L G+P++QML Q P P S
Sbjct: 997 DPPALNRVPKKKKMPENFMPPVPITSPIMNPL---GDPQSQMLQQQPSAPVPLSSQSSFP 1053
Query: 117 ------GWNWVG-HLPCLPTSLPPGILDPENQG 142
G + G P T +PP P +G
Sbjct: 1054 QPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEG 1086
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 26.9 bits (58), Expect = 8.1
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 5 SSSCSKDRPPTCAGSTFVRGGWENFPPFPTYAL--HSSGAC-LTNYKGATADTRHSSGW- 60
SS + PP +G++F GG P YAL ++G + A+ T +GW
Sbjct: 898 SSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWN 957
Query: 61 --PCLH-VSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSV- 116
P L+ V K + N S + L G+P++QML Q P P S
Sbjct: 958 DPPALNRVPKKKKMPENFMPPVPITSPIMNPL---GDPQSQMLQQQPSAPVPLSSQSSFP 1014
Query: 117 ------GWNWVG-HLPCLPTSLPPGILDPENQG 142
G + G P T +PP P +G
Sbjct: 1015 QPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEG 1047
>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 26.9 bits (58), Expect = 8.1
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 5 SSSCSKDRPPTCAGSTFVRGGWENFPPFPTYAL--HSSGAC-LTNYKGATADTRHSSGW- 60
SS + PP +G++F GG P YAL ++G + A+ T +GW
Sbjct: 937 SSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWN 996
Query: 61 --PCLH-VSLKDRHQGNIYISAERASACVVQLCSNGNPETQMLVQTPCLGQPALQVPSV- 116
P L+ V K + N S + L G+P++QML Q P P S
Sbjct: 997 DPPALNRVPKKKKMPENFMPPVPITSPIMNPL---GDPQSQMLQQQPSAPVPLSSQSSFP 1053
Query: 117 ------GWNWVG-HLPCLPTSLPPGILDPENQG 142
G + G P T +PP P +G
Sbjct: 1054 QPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEG 1086
>gi|215598824 ankyrin repeat and SOCS box-containing 10 isoform 2
[Homo sapiens]
Length = 474
Score = 26.9 bits (58), Expect = 8.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 38 HSSGACLTNYKGATADTRHSSGWPCLHVSLKDRHQGNIYISAERASACVVQLCS 91
H A L +GA D R++ GW L + R Q AE +A +QLCS
Sbjct: 272 HVELADLLLRRGACPDARNAEGWTPLLAACDVRCQS--ITDAEATTARCLQLCS 323
>gi|215598819 ankyrin repeat and SOCS box-containing 10 isoform 1
[Homo sapiens]
Length = 512
Score = 26.9 bits (58), Expect = 8.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 38 HSSGACLTNYKGATADTRHSSGWPCLHVSLKDRHQGNIYISAERASACVVQLCS 91
H A L +GA D R++ GW L + R Q AE +A +QLCS
Sbjct: 272 HVELADLLLRRGACPDARNAEGWTPLLAACDVRCQS--ITDAEATTARCLQLCS 323
>gi|215598806 ankyrin repeat and SOCS box-containing 10 isoform 3
[Homo sapiens]
Length = 452
Score = 26.9 bits (58), Expect = 8.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 38 HSSGACLTNYKGATADTRHSSGWPCLHVSLKDRHQGNIYISAERASACVVQLCS 91
H A L +GA D R++ GW L + R Q AE +A +QLCS
Sbjct: 212 HVELADLLLRRGACPDARNAEGWTPLLAACDVRCQS--ITDAEATTARCLQLCS 263
>gi|55741675 hypothetical protein LOC22889 [Homo sapiens]
Length = 614
Score = 26.9 bits (58), Expect = 8.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 95 PETQMLVQTPCLGQPALQVPSVGWNWVGHLPCLPTSLPP 133
P Q VQ P G P++ P+V G LP LPT +PP
Sbjct: 368 PPPQQPVQPP-YGVPSIVPPAVSLA-PGVLPALPTGVPP 404
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,635,491
Number of Sequences: 37866
Number of extensions: 422270
Number of successful extensions: 774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 31
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.