Guide to the Human Genome
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Name: LOC100290860 Sequence: fasta or formatted (167aa) NCBI GI: 239748175
Description:

PREDICTED: hypothetical protein XP_002346569

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          7           1
 C cysteine            7.8         13           1
 D aspartate           2.4          4           1
 E glutamate           3.0          5           1
 F phenylalanine       1.8          3           1
 G glycine             9.0         15           2
 H histidine           2.4          4           1
 I isoleucine          3.0          5           1
 K lysine              3.6          6           1
 L leucine             9.6         16           1
 M methionine          0.6          1           1
 N asparagine          5.4          9           1
 P proline            10.8         18           2
 Q glutamine           3.0          5           1
 R arginine            4.8          8           1
 S serine             11.4         19           3
 T threonine           6.6         11           1
 V valine              7.2         12           2
 W tryptophan          1.2          2           1
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346569 
LOC100290057          0.872   PREDICTED: hypothetical protein XP_002347008 
LOC100290689          0.295   PREDICTED: hypothetical protein XP_002346637 
LOC100289869          0.030   PREDICTED: hypothetical protein XP_002347023 
LOC100291142          0.030   PREDICTED: hypothetical protein XP_002347004 
PCDH21                0.027   protocadherin 21 precursor 
INPP5E                0.021   inositol polyphosphate-5-phosphatase E 
TUBGCP6               0.015   tubulin, gamma complex associated protein 6 
KLHL28                0.012   BTB (POZ) domain containing 5 
LOC100128435          0.012   PREDICTED: similar to hCG2045005 
LOC100128435          0.012   PREDICTED: similar to hCG2045005 
TRIM36                0.009   tripartite motif-containing 36 isoform 1 
LOC732428             0.006   PREDICTED: keratin-associated protein 9-2-like 2-li...
FAM189A1              0.006   hypothetical protein LOC23359 
LOC100129697          0.006   PREDICTED: hypothetical protein 
GRIN2C                0.006   N-methyl-D-aspartate receptor subunit 2C precursor [...
ZC3H6                 0.006   zinc finger CCCH-type domain containing 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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