Guide to the Human Genome
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Name: LOC100290689 Sequence: fasta or formatted (167aa) NCBI GI: 239748354
Description:

PREDICTED: hypothetical protein XP_002346637

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          6           1
 C cysteine            6.6         11           1
 D aspartate           2.4          4           1
 E glutamate           3.6          6           1
 F phenylalanine       2.4          4           1
 G glycine             9.6         16           2
 H histidine           4.2          7           1
 I isoleucine          1.2          2           1
 K lysine              3.6          6           1
 L leucine            12.0         20           2
 M methionine          1.8          3           1
 N asparagine          3.0          5           1
 P proline             9.0         15           2
 Q glutamine           3.6          6           1
 R arginine            7.8         13           2
 S serine             12.6         21           3
 T threonine           6.0         10           2
 V valine              4.2          7           2
 W tryptophan          1.8          3           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346637 
LOC100289869          0.567   PREDICTED: hypothetical protein XP_002347023 
LOC100291142          0.567   PREDICTED: hypothetical protein XP_002347004 
LOC100290057          0.313   PREDICTED: hypothetical protein XP_002347008 
LOC100290860          0.296   PREDICTED: hypothetical protein XP_002346569 
WSB1                  0.024   WD repeat and SOCS box-containing 1 isoform 1 
WSB1                  0.024   WD repeat and SOCS box-containing 1 isoform 2 
HFE                   0.018   hemochromatosis protein isoform 8 precursor 
HFE                   0.018   hemochromatosis protein isoform 7 precursor 
HFE                   0.015   hemochromatosis protein isoform 9 precursor 
HFE                   0.015   hemochromatosis protein isoform 6 precursor 
HFE                   0.015   hemochromatosis protein isoform 1 precursor 
LARP1B                0.012   La ribonucleoprotein domain family member 2 isoform ...
C1orf167              0.009   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.009   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.009   PREDICTED: hypothetical protein LOC284498 
KLHL28                0.009   BTB (POZ) domain containing 5 
PLCD4                 0.009   phospholipase C, delta 4 
TFB1M                 0.006   transcription factor B1, mitochondrial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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