Guide to the Human Genome
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Name: LOC100290057 Sequence: fasta or formatted (167aa) NCBI GI: 239749355
Description:

PREDICTED: hypothetical protein XP_002347008

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          9           1
 C cysteine            7.2         12           1
 D aspartate           3.0          5           1
 E glutamate           2.4          4           1
 F phenylalanine       2.4          4           1
 G glycine             9.6         16           2
 H histidine           3.6          6           1
 I isoleucine          1.8          3           1
 K lysine              2.4          4           1
 L leucine             9.0         15           1
 M methionine          1.8          3           1
 N asparagine          5.4          9           1
 P proline            10.2         17           2
 Q glutamine           4.8          8           1
 R arginine            4.8          8           1
 S serine              9.6         16           3
 T threonine           6.0         10           1
 V valine              6.6         11           2
 W tryptophan          2.4          4           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347008 
LOC100290860          0.854   PREDICTED: hypothetical protein XP_002346569 
LOC100290689          0.306   PREDICTED: hypothetical protein XP_002346637 
LOC100289869          0.064   PREDICTED: hypothetical protein XP_002347023 
LOC100291142          0.064   PREDICTED: hypothetical protein XP_002347004 
INPP5E                0.023   inositol polyphosphate-5-phosphatase E 
PCDH21                0.017   protocadherin 21 precursor 
TRIM36                0.015   tripartite motif-containing 36 isoform 1 
MUC5AC                0.012   mucin 5AC 
LOC100289743          0.012   PREDICTED: hypothetical protein XP_002348163 
MUC5B                 0.012   mucin 5, subtype B, tracheobronchial 
KLHL28                0.012   BTB (POZ) domain containing 5 
NKX2-4                0.009   NK2 homeobox 4 
ZC3H6                 0.009   zinc finger CCCH-type domain containing 6 
LOC100128435          0.009   PREDICTED: similar to hCG2045005 
LOC100290261          0.009   PREDICTED: hypothetical protein XP_002347648 
LOC100128435          0.009   PREDICTED: similar to hCG2045005 
SVEP1                 0.009   polydom 
GRIN2C                0.006   N-methyl-D-aspartate receptor subunit 2C precursor [...
RIPK4                 0.006   ankyrin repeat domain 3 
EVL                   0.006   Enah/Vasp-like 
C11orf16              0.006   hypothetical protein LOC56673 
S1PR2                 0.006   endothelial differentiation, sphingolipid G-protein...
SEC31A                0.006   SEC31 homolog A isoform 1 
SEC31A                0.006   SEC31 homolog A isoform 2 
SEC31A                0.006   SEC31 homolog A isoform 1 
ASB10                 0.006   ankyrin repeat and SOCS box-containing 10 isoform 2...
ASB10                 0.006   ankyrin repeat and SOCS box-containing 10 isoform 1...
ASB10                 0.006   ankyrin repeat and SOCS box-containing 10 isoform 3...
KIAA0907              0.006   hypothetical protein LOC22889 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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