Guide to the Human Genome
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Name: LOC100128435 Sequence: fasta or formatted (255aa) NCBI GI: 169208130
Description:

PREDICTED: similar to hCG2045005

Not currently referenced in the text

Other entries for this name:
alt mRNA {255aa} PREDICTED: similar to hCG2045005
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         23           2
 C cysteine            3.5          9           1
 D aspartate           2.7          7           1
 E glutamate           5.9         15           1
 F phenylalanine       2.7          7           2
 G glycine            11.8         30           2
 H histidine           4.7         12           1
 I isoleucine          1.2          3           1
 K lysine              3.1          8           1
 L leucine             9.4         24           2
 M methionine          2.0          5           2
 N asparagine          2.4          6           1
 P proline             7.8         20           2
 Q glutamine           3.5          9           2
 R arginine            7.5         19           2
 S serine              9.8         25           2
 T threonine           4.7         12           1
 V valine              4.7         12           1
 W tryptophan          2.4          6           2
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2045005 
LOC100128435          1.000   PREDICTED: similar to hCG2045005 
FLG                   0.023   filaggrin 
OTUD7B                0.016   zinc finger protein Cezanne 
RECQL4                0.012   RecQ protein-like 4 
STARD9                0.012   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100289408          0.012   PREDICTED: hypothetical protein 
STARD9                0.012   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100289408          0.012   PREDICTED: hypothetical protein XP_002344217 
STARD9                0.012   PREDICTED: StAR-related lipid transfer (START) doma...
TBC1D2                0.010   TBC1 domain family, member 2 
ACTN1                 0.010   actinin, alpha 1 isoform c 
ACTN1                 0.010   actinin, alpha 1 isoform a 
ACTN1                 0.010   actinin, alpha 1 isoform b 
TNRC6C                0.010   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.010   trinucleotide repeat containing 6C isoform 2 
TGOLN2                0.010   trans-golgi network protein 2 
GPAM                  0.008   mitochondrial glycerol 3-phosphate acyltransferase ...
SSH3                  0.008   slingshot homolog 3 
SAFB                  0.008   scaffold attachment factor B 
EP400                 0.008   E1A binding protein p400 
ACAN                  0.008   aggrecan isoform 1 precursor 
LOC100292591          0.008   PREDICTED: hypothetical protein 
ANKRD33B              0.008   PREDICTED: ankyrin repeat domain 33B 
LOC100290860          0.008   PREDICTED: hypothetical protein XP_002346569 
DIP2C                 0.008   DIP2 disco-interacting protein 2 homolog C 
ZNF598                0.008   zinc finger protein 598 
CEL                   0.006   carboxyl ester lipase precursor 
LOC100293668          0.006   PREDICTED: hypothetical protein 
LOC100290057          0.006   PREDICTED: hypothetical protein XP_002347008 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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