Guide to the Human Genome
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Name: LOC100291142 Sequence: fasta or formatted (156aa) NCBI GI: 239749348
Description:

PREDICTED: hypothetical protein XP_002347004

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          9           1
 C cysteine            3.8          6           1
 D aspartate           1.3          2           1
 E glutamate           3.2          5           1
 F phenylalanine       3.2          5           1
 G glycine             9.6         15           2
 H histidine           4.5          7           1
 I isoleucine          1.3          2           1
 K lysine              3.8          6           1
 L leucine             9.6         15           1
 M methionine          2.6          4           1
 N asparagine          3.8          6           1
 P proline            10.9         17           2
 Q glutamine           4.5          7           2
 R arginine            6.4         10           1
 S serine             14.1         22           3
 T threonine           4.5          7           1
 V valine              4.5          7           2
 W tryptophan          1.3          2           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347004 
LOC100289869          0.993   PREDICTED: hypothetical protein XP_002347023 
LOC100290689          0.621   PREDICTED: hypothetical protein XP_002346637 
LOC100290057          0.072   PREDICTED: hypothetical protein XP_002347008 
LOC100290860          0.033   PREDICTED: hypothetical protein XP_002346569 
LOC100292172          0.023   PREDICTED: hypothetical protein 
LOC100289763          0.023   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.023   PREDICTED: hypothetical protein XP_002343623 
C6orf132              0.016   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.016   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.016   PREDICTED: hypothetical protein LOC647024 
KDM3B                 0.016   jumonji domain containing 1B 
SALL3                 0.016   sal-like 3 
GRIN2D                0.016   N-methyl-D-aspartate receptor subunit 2D precursor ...
ZBED4                 0.016   zinc finger, BED-type containing 4 
GLP2R                 0.016   glucagon-like peptide 2 receptor precursor 
NFKBIL2               0.016   NF-kappa-B inhibitor-like protein 2 
PCDHGB4               0.016   protocadherin gamma subfamily B, 4 isoform 2 precurs...
PCDHGB4               0.016   protocadherin gamma subfamily B, 4 isoform 1 precurs...
TAOK1                 0.016   TAO kinase 1 
CACNA1H               0.013   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.013   calcium channel, voltage-dependent, T type, alpha 1H...
IL2RB                 0.013   interleukin 2 receptor beta precursor 
NKX1-1                0.013   PREDICTED: NK1 homeobox 1 
NKX1-1                0.013   PREDICTED: NK1 homeobox 1 
NKX1-1                0.013   PREDICTED: HPX-153 homeobox 
CITED2                0.010   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
LOC100128009          0.010   PREDICTED: hypothetical protein 
LOC100128009          0.010   PREDICTED: hypothetical protein 
LOC100128009          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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