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Search of human proteins with 239749348
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo
sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo ... 331 2e-91
gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo ... 329 5e-91
gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo ... 215 1e-56
gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo ... 47 5e-06
gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo ... 35 0.034
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 32 0.22
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 32 0.22
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 30 0.64
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 30 0.64
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 30 0.64
gi|38372909 jumonji domain containing 1B [Homo sapiens] 30 0.64
gi|154146199 sal-like 3 [Homo sapiens] 30 0.64
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 30 0.83
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens] 30 0.83
gi|4758438 glucagon-like peptide 2 receptor precursor [Homo sapi... 30 0.83
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 30 0.83
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 30 0.83
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 30 0.83
gi|45439370 TAO kinase 1 [Homo sapiens] 30 1.1
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 29 1.4
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 29 1.4
gi|4504665 interleukin 2 receptor beta precursor [Homo sapiens] 29 1.8
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 29 1.8
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 29 1.8
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 29 1.8
gi|19923343 Cbp/p300-interacting transactivator, with Glu/Asp-ri... 28 3.2
gi|169215700 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|169216113 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|169215489 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
>gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo
sapiens]
Length = 156
Score = 331 bits (848), Expect = 2e-91
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MGSKCPVCTLPLSVVANRNGFMSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRS 60
MGSKCPVCTLPLSVVANRNGFMSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRS
Sbjct: 1 MGSKCPVCTLPLSVVANRNGFMSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRS 60
Query: 61 LPHKLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGP 120
LPHKLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGP
Sbjct: 61 LPHKLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGP 120
Query: 121 NTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP 156
NTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP
Sbjct: 121 NTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP 156
>gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo
sapiens]
Length = 156
Score = 329 bits (844), Expect = 5e-91
Identities = 155/156 (99%), Positives = 155/156 (99%)
Query: 1 MGSKCPVCTLPLSVVANRNGFMSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRS 60
MGSKCPVCTLPLSVVANRNGFMSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRS
Sbjct: 1 MGSKCPVCTLPLSVVANRNGFMSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRS 60
Query: 61 LPHKLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGP 120
LPHKLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGP
Sbjct: 61 LPHKLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGP 120
Query: 121 NTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP 156
NTLSQGAGSAGPQRGSELGGPPALP HIPASWNPGP
Sbjct: 121 NTLSQGAGSAGPQRGSELGGPPALPAHIPASWNPGP 156
>gi|239748354 PREDICTED: hypothetical protein XP_002346637 [Homo
sapiens]
Length = 167
Score = 215 bits (548), Expect = 1e-56
Identities = 107/128 (83%), Positives = 111/128 (86%), Gaps = 1/128 (0%)
Query: 22 MSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRSLPHKLQERHSRHNTFQQVAMS 81
+SSSCSKD PPTCAGSTFG MRELPTISHL TAFLR LPHKLQERH RH TFQ+VAMS
Sbjct: 4 VSSSCSKDRPPTCAGSTFGWAGMRELPTISHLCTAFLRRLPHKLQERHGRHTTFQRVAMS 63
Query: 82 SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGGP 141
SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLS AGS+ PQ GSELGG
Sbjct: 64 SCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSWTAGSSCPQHGSELGGH 123
Query: 142 -PALPVHI 148
P LP +
Sbjct: 124 LPCLPTSL 131
>gi|239749355 PREDICTED: hypothetical protein XP_002347008 [Homo
sapiens]
Length = 167
Score = 47.4 bits (111), Expect = 5e-06
Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 21 FMSSSCSKDHPPTCAGSTFGQGRMRELPTIS--HLHTAFLRSLPHKLQERHSRHNTFQQV 78
FMSSSCSKD PPTCAGSTF +G P LH++ +K +RH++
Sbjct: 3 FMSSSCSKDRPPTCAGSTFVRGGWENFPPFPTYALHSSGACLTNYKGATADTRHSSGWPC 62
Query: 79 AMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPD----VGPNTLSQGAGSAGPQR 134
S L+ G +Y+ E S C V + NP+ V L Q A
Sbjct: 63 LHVS--LKDRHQGN-IYISAERASAC--VVQLCSNGNPETQMLVQTPCLGQPALQVPSVG 117
Query: 135 GSELGGPPALPVHIP 149
+ +G P LP +P
Sbjct: 118 WNWVGHLPCLPTSLP 132
>gi|239748175 PREDICTED: hypothetical protein XP_002346569 [Homo
sapiens]
Length = 167
Score = 34.7 bits (78), Expect = 0.034
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 22 MSSSCSKDHPPTCAGSTFGQGRMRELP 48
+SSSCSK PTC GSTF +G P
Sbjct: 4 VSSSCSKYRLPTCTGSTFSRGGCENFP 30
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 32.0 bits (71), Expect = 0.22
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 113 SRNPDVGPNTLSQGAGSAGP---QRGSELGGPPALPVHIPASWNP 154
SR+P GP ++ G + P Q S GP A P P +W+P
Sbjct: 96 SRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDP 140
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 32.0 bits (71), Expect = 0.22
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 113 SRNPDVGPNTLSQGAGSAGP---QRGSELGGPPALPVHIPASWNP 154
SR+P GP ++ G + P Q S GP A P P +W+P
Sbjct: 96 SRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDP 140
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 32.0 bits (71), Expect = 0.22
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 113 SRNPDVGPNTLSQGAGSAGP---QRGSELGGPPALPVHIPASWNP 154
SR+P GP ++ G + P Q S GP A P P +W+P
Sbjct: 96 SRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDP 140
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.4 bits (67), Expect = 0.64
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 113 SRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNP 154
SR V TL++G G+AGP E+ PP LP PAS P
Sbjct: 779 SREVAVVMPTLARG-GAAGPGEPVEVKEPPGLPAKPPASAQP 819
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.4 bits (67), Expect = 0.64
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 113 SRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNP 154
SR V TL++G G+AGP E+ PP LP PAS P
Sbjct: 779 SREVAVVMPTLARG-GAAGPGEPVEVKEPPGLPAKPPASAQP 819
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 30.4 bits (67), Expect = 0.64
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 113 SRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNP 154
SR V TL++G G+AGP E+ PP LP PAS P
Sbjct: 779 SREVAVVMPTLARG-GAAGPGEPVEVKEPPGLPAKPPASAQP 819
>gi|38372909 jumonji domain containing 1B [Homo sapiens]
Length = 1761
Score = 30.4 bits (67), Expect = 0.64
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 100 SFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGGPPAL 144
S S C PA K K +V N G S GP +G G P L
Sbjct: 291 SDSGCDPASKKLKGDRGEVDSNGSDGGEASRGPWKGGNASGEPGL 335
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 30.4 bits (67), Expect = 0.64
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 29/134 (21%)
Query: 29 DHPPTCAGSTFGQGRMRELPTISHLHTA-FLRSLPHKLQERHSRHNTFQQVAMSSCQLER 87
D+ PTC+G +G E P + L + L ++P + QL
Sbjct: 489 DNVPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTSV----------------GLQLPP 532
Query: 88 SSPGKYLYLGRESFSLCS-------PAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGG 140
+ PG + Y S + S PA + S +P G N + G + S LGG
Sbjct: 533 TVPGAHGYADSPSATPASRSPQRPSPASSECASLSP--GLNHVESGVSATAESPQSLLGG 590
Query: 141 PP---ALPVHIPAS 151
PP A PV +P +
Sbjct: 591 PPLTKAEPVSLPCT 604
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 30.0 bits (66), Expect = 0.83
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 106 PAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP 156
PA +W +P+ P L GAG AG G+ GG PA P A+ P P
Sbjct: 1056 PAPARWPRSDPESQP-LLGPGAGGAGGTGGAG-GGAPAAPPPCRAAPPPCP 1104
>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
Length = 1171
Score = 30.0 bits (66), Expect = 0.83
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 14 VVANRNGFMSSSCSKDHPPTCAGSTFGQGRMRELPTISHLHTAFLRSLPHKLQERHSRHN 73
VV ++ GF+ +S + T A + ++ +LPT+ + + P ++ N
Sbjct: 508 VVGSQKGFLGASLANSPYATLASAESSSSKLTDLPTVVTKNNQVM--FPVNSKKTSKLWN 565
Query: 74 TFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSR-NPDVGPNTLSQGAGSAGP 132
F + S ++ G+ + G++ +L + +L+ R + +V +S+ A + P
Sbjct: 566 HFSICSADSTKVVCLHCGRTISRGKKPTNLGTSCLLRHLQRFHSNVLKTEVSETARPSSP 625
Query: 133 Q----RGSELGG 140
RG+EL G
Sbjct: 626 DTRVPRGTELSG 637
>gi|4758438 glucagon-like peptide 2 receptor precursor [Homo
sapiens]
Length = 553
Score = 30.0 bits (66), Expect = 0.83
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 126 GAGSAGPQRGSE--LGGPPALPVHIPASWNPGP 156
G+ AGP RGS L G LP+ IPA W P
Sbjct: 4 GSSRAGPGRGSAGLLPGVHELPMGIPAPWGTSP 36
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 30.0 bits (66), Expect = 0.83
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 112 KSRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP 156
+SR+ ++ S+G SAGP R S+ + A+W PGP
Sbjct: 732 RSRHGPASSSSSSEGEDSAGPARPSQKRPRCSATAQRVAAWTPGP 776
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 30.0 bits (66), Expect = 0.83
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 64 KLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPD 117
K++++ SRHN +C+LE P K L R ++ L + AVL + +NP+
Sbjct: 368 KVRDKDSRHN-----GEVTCKLEGDVPFKILTSSRNTYKLVTDAVLD-REQNPE 415
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 30.0 bits (66), Expect = 0.83
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 64 KLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPD 117
K++++ SRHN +C+LE P K L R ++ L + AVL + +NP+
Sbjct: 368 KVRDKDSRHN-----GEVTCKLEGDVPFKILTSSRNTYKLVTDAVLD-REQNPE 415
>gi|45439370 TAO kinase 1 [Homo sapiens]
Length = 1001
Score = 29.6 bits (65), Expect = 1.1
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Query: 46 ELPTISHLHTAFLRSL-PHKLQERHSRHNTFQQVAMSSCQLERSSPGKYLYLGRESFSLC 104
E+ + + T +RSL + +E + + ++ S+ L SP E+FS
Sbjct: 852 EMLALQNERTERIRSLLERQAREIEAFDSESMRLGFSNMVLSNLSP--------EAFSHS 903
Query: 105 SPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP 156
P W S NP GP GP G +GGPP H P P P
Sbjct: 904 YPGASGW-SHNPTGGP----------GPHWGHPMGGPPQAWGH-PMQGGPQP 943
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 29.3 bits (64), Expect = 1.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 116 PDVGPNTLSQGAGSAGP-QRGSELGGPPALPVHIPASWN-PGP 156
P + P+ + G GS P +G GGPP H P S N P P
Sbjct: 614 PTILPSGVGSGKGSTSPGPKGKWAGGPPGTGGHGPLSLNSPDP 656
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 29.3 bits (64), Expect = 1.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 116 PDVGPNTLSQGAGSAGP-QRGSELGGPPALPVHIPASWN-PGP 156
P + P+ + G GS P +G GGPP H P S N P P
Sbjct: 614 PTILPSGVGSGKGSTSPGPKGKWAGGPPGTGGHGPLSLNSPDP 656
>gi|4504665 interleukin 2 receptor beta precursor [Homo sapiens]
Length = 551
Score = 28.9 bits (63), Expect = 1.8
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 98 RESFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNPGP 156
R+ L SP++L S P + + G AG +R PP+L +P W+P P
Sbjct: 424 RDDLLLFSPSLLGGPS------PPSTAPGGSGAGEERM-----PPSLQERVPRDWDPQP 471
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 110 KWKSRNPDVGPNTLSQGAGSAGPQRGSELGGPPAL 144
KWK +NP + + G G GP G G P L
Sbjct: 716 KWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGL 750
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 110 KWKSRNPDVGPNTLSQGAGSAGPQRGSELGGPPAL 144
KWK +NP + + G G GP G G P L
Sbjct: 151 KWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGL 185
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 110 KWKSRNPDVGPNTLSQGAGSAGPQRGSELGGPPAL 144
KWK +NP + + G G GP G G P L
Sbjct: 313 KWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGL 347
>gi|19923343 Cbp/p300-interacting transactivator, with Glu/Asp-rich
carboxy-terminal domain, 2 [Homo sapiens]
Length = 270
Score = 28.1 bits (61), Expect = 3.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 113 SRNPDVGPNTLSQGAGSAGPQRGSELGGPPALPVHIPASWNP 154
S P ++ GAGS+ GS G PA H+PA+ P
Sbjct: 173 SSTPGGSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLP 214
>gi|169215700 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 3.2
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 81 SSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGG 140
++C L+R Y Y S+ L+W N LS + + GP+ +
Sbjct: 231 AACSLQRDDLATYYYQQHYSYPPTVLQPLEWNPGNGAASLALLSPASATMGPEAST---S 287
Query: 141 PPALP 145
PP LP
Sbjct: 288 PPPLP 292
>gi|169216113 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 3.2
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 81 SSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGG 140
++C L+R Y Y S+ L+W N LS + + GP+ +
Sbjct: 231 AACSLQRDDLATYYYQQHYSYPPTVLQPLEWNPGNGAASLALLSPASATMGPEAST---S 287
Query: 141 PPALP 145
PP LP
Sbjct: 288 PPPLP 292
>gi|169215489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 3.2
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 81 SSCQLERSSPGKYLYLGRESFSLCSPAVLKWKSRNPDVGPNTLSQGAGSAGPQRGSELGG 140
++C L+R Y Y S+ L+W N LS + + GP+ +
Sbjct: 231 AACSLQRDDLATYYYQQHYSYPPTVLQPLEWNPGNGAASLALLSPASATMGPEAST---S 287
Query: 141 PPALP 145
PP LP
Sbjct: 288 PPPLP 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,316,999
Number of Sequences: 37866
Number of extensions: 427997
Number of successful extensions: 1540
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 74
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.