Guide to the Human Genome
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Name: LOC100128009 Sequence: fasta or formatted (373aa) NCBI GI: 169215700
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {373aa} PREDICTED: hypothetical protein
alt prot {373aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         30           2
 C cysteine            2.4          9           1
 D aspartate           2.9         11           2
 E glutamate           3.2         12           1
 F phenylalanine       2.7         10           1
 G glycine             6.4         24           1
 H histidine           2.9         11           1
 I isoleucine          2.7         10           1
 K lysine              3.8         14           1
 L leucine            12.1         45           3
 M methionine          1.6          6           1
 N asparagine          0.8          3           1
 P proline             7.8         29           3
 Q glutamine           8.0         30           2
 R arginine            5.6         21           2
 S serine             12.3         46           3
 T threonine           5.4         20           2
 V valine              7.0         26           2
 W tryptophan          2.4          9           1
 Y tyrosine            1.9          7           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128009          0.996   PREDICTED: hypothetical protein 
LOC100128009          0.996   PREDICTED: hypothetical protein 
LOC642838             0.196   PREDICTED: similar to hCG1742442 
LOC100287723          0.187   PREDICTED: hypothetical protein XP_002342271 
LOC642424             0.187   PREDICTED: similar to hCG1742442 
LOC642424             0.187   PREDICTED: similar to hCG1742442 
LOC642424             0.187   PREDICTED: similar to hCG1742442 
LOC650405             0.185   PREDICTED: similar to hCG2042707 
LOC100132426          0.185   PREDICTED: similar to hCG1742442 
LOC100288993          0.185   PREDICTED: hypothetical protein XP_002342967 
LOC439957             0.182   PREDICTED: similar to hCG1742442 
LOC439957             0.182   PREDICTED: similar to hCG1742442 
LOC652493             0.160   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100130100          0.152   PREDICTED: similar to hCG26659 
LOC100291464          0.152   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.152   PREDICTED: similar to hCG26659 
LOC440871             0.116   PREDICTED: similar to hCG2043206 
LOC100291786          0.108   PREDICTED: similar to hCG2043206 
LOC100291731          0.107   PREDICTED: similar to hCG36857 
LOC100290819          0.107   PREDICTED: hypothetical protein XP_002348319 
LOC100291682          0.103   PREDICTED: similar to hCG1686089 
LOC100290992          0.103   PREDICTED: hypothetical protein XP_002347049 
LOC100291027          0.101   PREDICTED: hypothetical protein XP_002348323 
LOC100290481          0.042   PREDICTED: hypothetical protein XP_002348153 
LOC100293440          0.037   PREDICTED: similar to Ig lambda chain 
LOC100293277          0.030   PREDICTED: similar to hCG2040021 
LOC100293142          0.027   PREDICTED: similar to hCG2040019 
LOC100290557          0.022   PREDICTED: hypothetical protein XP_002348155 
DSCAM                 0.022   Down syndrome cell adhesion molecule isoform CHD2-42...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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