Guide to the Human Genome
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Search of human proteins with 239749289

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo
sapiens]
         (154 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754761 PREDICTED: hypothetical protein [Homo sapiens]           315   1e-86
gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo ...   315   1e-86
gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo ...   315   1e-86
gi|239509073 PREDICTED: hypothetical protein [Homo sapiens]           315   1e-86
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ...   142   1e-34
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ...   142   1e-34
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ...   142   1e-34
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ...   142   1e-34
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ...   122   9e-29
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ...   122   9e-29
gi|33286444 mastermind-like 2 [Homo sapiens]                           41   4e-04
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s...    40   0.001
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ...    40   0.001
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ...    40   0.001
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s...    40   0.001
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             39   0.001
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    39   0.002
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           39   0.002
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]           39   0.002
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]              39   0.002
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]               39   0.002
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo...    37   0.005
gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo sap...    37   0.007
gi|61743942 abl-interactor 1 isoform a [Homo sapiens]                  37   0.007
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    37   0.007
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    37   0.007
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    37   0.007
gi|30181244 doublecortin isoform c [Homo sapiens]                      37   0.009
gi|30181240 doublecortin isoform c [Homo sapiens]                      37   0.009
gi|30181246 doublecortin isoform a [Homo sapiens]                      37   0.009

>gi|239754761 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score =  315 bits (807), Expect = 1e-86
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
           MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60

Query: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
           CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120

Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154


>gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo
           sapiens]
          Length = 154

 Score =  315 bits (807), Expect = 1e-86
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
           MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60

Query: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
           CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120

Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154


>gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo
           sapiens]
          Length = 154

 Score =  315 bits (807), Expect = 1e-86
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
           MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60

Query: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
           CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120

Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154


>gi|239509073 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score =  315 bits (807), Expect = 1e-86
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
           MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1   MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60

Query: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
           CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61  CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120

Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154


>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
           sapiens]
          Length = 348

 Score =  142 bits (357), Expect = 1e-34
 Identities = 71/92 (77%), Positives = 76/92 (82%)

Query: 63  GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
           G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S  V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270

Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           FSQ ASFFSAVPVRPSR   R    STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302


>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
           sapiens]
          Length = 348

 Score =  142 bits (357), Expect = 1e-34
 Identities = 71/92 (77%), Positives = 76/92 (82%)

Query: 63  GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
           G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S  V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270

Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           FSQ ASFFSAVPVRPSR   R    STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302


>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
           sapiens]
          Length = 348

 Score =  142 bits (357), Expect = 1e-34
 Identities = 71/92 (77%), Positives = 76/92 (82%)

Query: 63  GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
           G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S  V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270

Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           FSQ ASFFSAVPVRPSR   R    STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302


>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
           sapiens]
          Length = 348

 Score =  142 bits (357), Expect = 1e-34
 Identities = 71/92 (77%), Positives = 76/92 (82%)

Query: 63  GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
           G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S  V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270

Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
           FSQ ASFFSAVPVRPSR   R    STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302


>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
           sapiens]
          Length = 585

 Score =  122 bits (307), Expect = 9e-29
 Identities = 62/86 (72%), Positives = 68/86 (79%)

Query: 54  SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
           +S  +P     TLG SPLLPGGSR+IQKFL  S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 69  TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128

Query: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
            WF NSTAVFSQSA FFS VPV PSR
Sbjct: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154


>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
           sapiens]
          Length = 585

 Score =  122 bits (307), Expect = 9e-29
 Identities = 62/86 (72%), Positives = 68/86 (79%)

Query: 54  SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
           +S  +P     TLG SPLLPGGSR+IQKFL  S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 69  TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128

Query: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
            WF NSTAVFSQSA FFS VPV PSR
Sbjct: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154


>gi|33286444 mastermind-like 2 [Homo sapiens]
          Length = 1156

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 21  PSSLDVPPLLHSPSPGPTGQDKAPLPSL--SGLSPSSSPTPGCPGAT 65
           P++    P    PSPGP GQ+K P PS      SP SSP PG  G +
Sbjct: 458 PTNWSALPSSAGPSPGPFGQEKIPSPSFGQQTFSPQSSPMPGVAGGS 504


>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 22/70 (31%), Positives = 25/70 (35%)

Query: 6   PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
           P  P  TS       P+    P    SP PGP  Q   P P  +G +    P P CP   
Sbjct: 578 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 637

Query: 66  LGASPLLPGG 75
               P  P G
Sbjct: 638 PAPHPTGPPG 647



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 6   PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
           P GP P ++GS +   P     PP    P+P PTG       P P     S S L+  S 
Sbjct: 613 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 669

Query: 56  SPTPGCPG-ATLGASPLLPGG 75
            P PG PG +T G  P  P G
Sbjct: 670 VPPPGLPGSSTPGVLPYFPPG 690


>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 22/70 (31%), Positives = 25/70 (35%)

Query: 6   PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
           P  P  TS       P+    P    SP PGP  Q   P P  +G +    P P CP   
Sbjct: 578 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 637

Query: 66  LGASPLLPGG 75
               P  P G
Sbjct: 638 PAPHPTGPPG 647



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 6   PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
           P GP P ++GS +   P     PP    P+P PTG       P P     S S L+  S 
Sbjct: 613 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 669

Query: 56  SPTPGCPG-ATLGASPLLPGG 75
            P PG PG +T G  P  P G
Sbjct: 670 VPPPGLPGSSTPGVLPYFPPG 690


>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 22/70 (31%), Positives = 25/70 (35%)

Query: 6   PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
           P  P  TS       P+    P    SP PGP  Q   P P  +G +    P P CP   
Sbjct: 578 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 637

Query: 66  LGASPLLPGG 75
               P  P G
Sbjct: 638 PAPHPTGPPG 647



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 6   PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
           P GP P ++GS +   P     PP    P+P PTG       P P     S S L+  S 
Sbjct: 613 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 669

Query: 56  SPTPGCPG-ATLGASPLLPGG 75
            P PG PG +T G  P  P G
Sbjct: 670 VPPPGLPGSSTPGVLPYFPPG 690


>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
           sapiens]
          Length = 677

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 22/70 (31%), Positives = 25/70 (35%)

Query: 6   PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
           P  P  TS       P+    P    SP PGP  Q   P P  +G +    P P CP   
Sbjct: 439 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 498

Query: 66  LGASPLLPGG 75
               P  P G
Sbjct: 499 PAPHPTGPPG 508



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 6   PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
           P GP P ++GS +   P     PP    P+P PTG       P P     S S L+  S 
Sbjct: 474 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 530

Query: 56  SPTPGCPG-ATLGASPLLPGG 75
            P PG PG +T G  P  P G
Sbjct: 531 VPPPGLPGSSTPGVLPYFPPG 551


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 41/134 (30%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 5    APGGPPTTSGSYTYQCPSSLDVPPLLH--SPSPGPTGQDKAPL-PSLSGLSPSSSPT-PG 60
            +P   P + G YT Q PS     P     SPS  PT  + +P  PS S  SPS SPT P 
Sbjct: 1597 SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPS 1656

Query: 61   CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
                +   SP  P  S     +       T  S   +SP      PS +    S+ P S 
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSY-----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1711

Query: 121  AVFSQSASFFSAVP 134
            +    S S+    P
Sbjct: 1712 SYSPTSPSYSPTSP 1725



 Score = 32.0 bits (71), Expect = 0.22
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 34   SPGPTGQDKAPLPSLSGLSPSSSP----TPGCPGATLGASPLLP 73
            +PG  G   +     SG SP  SP    TPG PG+   +SP +P
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP 1583



 Score = 31.2 bits (69), Expect = 0.37
 Identities = 40/127 (31%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 12   TSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPL-PSLSGLSPSSSPT-PGCPGATLGAS 69
            TS SY+   P+S    P   SP+  PT  +  P  PS S  SPS SPT P     +   S
Sbjct: 1730 TSPSYS---PTSPSYSPT--SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYS 1784

Query: 70   PLLPGGSRKIQKFLLRS-KFSTFSSRLC-SSPYSCSKVPSTAHLPSSWFPNSTAVFSQSA 127
            P  P  S     +   S  +S  S R    SP      PS +    S+ P S      S 
Sbjct: 1785 PTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSP 1844

Query: 128  SFFSAVP 134
            S+  + P
Sbjct: 1845 SYSPSSP 1851



 Score = 27.7 bits (60), Expect = 4.1
 Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 9/148 (6%)

Query: 12   TSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSS---SPT-PGCPGATLG 67
            TS SY+   PS     P     SP  T Q     PS    SPSS   SPT P     +  
Sbjct: 1786 TSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPS 1845

Query: 68   ASPLLPGGSRKIQKFLLRS-KFSTFSSRLCSSPYSCSKVPST-AHLPSS-WFPNSTAVFS 124
             SP  P  +    K+   S K+S  S +   SP S +  P+T  + P+S  +  ++ V++
Sbjct: 1846 YSPSSPEYTPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903

Query: 125  QSASFFSAVPVRPSRVSKRVRQESTFFS 152
             ++  +S      S  S +    S  +S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKYSPTSPTYS 1931


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 10/146 (6%)

Query: 6   PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
           P  PPT  G +  Q  + L VPP   +P+P   G  + PL   S   P   P P  P   
Sbjct: 825 PQAPPTLPGIFVIQ--NQLGVPPPASNPAPTAPGPPQPPLRPQS--QPPEGPLPPAPHLP 880

Query: 66  LGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSS--PYSCSKVPSTAHL---PSSWFPNST 120
             ++      S +    L     S F  +   S  P+     P T HL   P++  P   
Sbjct: 881 PSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTPPPTLHLVPEPAAPPPPPP 940

Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQ 146
             F    + F A+P +P  + +R  Q
Sbjct: 941 RTFQMVTTPFPALP-QPKALLERFHQ 965



 Score = 31.6 bits (70), Expect = 0.28
 Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 7   GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAP--LPSLSGLSPSSSPTPGCPGA 64
           G  P++S S  +Q P   D P   H PSP PT     P   P      PS  P   CP  
Sbjct: 770 GPGPSSSPSLPHQAPLG-DSP---HLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPP 825

Query: 65  TLGASPLLPG 74
              A P LPG
Sbjct: 826 Q--APPTLPG 833



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 8   GPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKA---PLPSLSGLSPSSSPTPGCPGA 64
           GPPT         P  +    L   P   P G       P+P L GL P+ SP  G   A
Sbjct: 171 GPPTVLTHQALVPPQDVVNKALSVQPFLQPVGLGNVTLQPIPGLQGL-PNGSP-GGATAA 228

Query: 65  TLGASPL 71
           TLG +P+
Sbjct: 229 TLGLAPI 235


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 8   GPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLG 67
           GPP TS       P    V P+L  P P  T     P+P L G  P S+P P  PG    
Sbjct: 385 GPPATSMPELQGPP----VTPVLELPGPSAT-----PVPELPG--PLSTPVPELPGPPAT 433

Query: 68  ASPLLPGGS 76
           A P LPG S
Sbjct: 434 AVPELPGPS 442



 Score = 30.4 bits (67), Expect = 0.63
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 8   GPPTTSGSYTYQCPSSLDVP--------PLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTP 59
           GPP T        PS+  VP        P+   P P  T   + P PS++ +   S   P
Sbjct: 396 GPPVTP-VLELPGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELP 454

Query: 60  GCPGATLGASP 70
           G P  ++G  P
Sbjct: 455 GLPAPSMGLEP 465


>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
          Length = 2303

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 8   GPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLG 67
           GPP TS       P    V P+L  P P  T     P+P L G  P S+P P  PG    
Sbjct: 385 GPPATSMPELQGPP----VTPVLELPGPSAT-----PVPELPG--PLSTPVPELPGPPAT 433

Query: 68  ASPLLPGGS 76
           A P LPG S
Sbjct: 434 AVPELPGPS 442



 Score = 30.4 bits (67), Expect = 0.63
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 8   GPPTTSGSYTYQCPSSLDVP--------PLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTP 59
           GPP T        PS+  VP        P+   P P  T   + P PS++ +   S   P
Sbjct: 396 GPPVTP-VLELPGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELP 454

Query: 60  GCPGATLGASP 70
           G P  ++G  P
Sbjct: 455 GLPAPSMGLEP 465


>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
          Length = 977

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 32  SPSPGP--TGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFS 89
           SP+P P  + Q   PLPS +   PS +P  G P     + P+                  
Sbjct: 503 SPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPV------------------ 544

Query: 90  TFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAVFSQSASFFSAVPVRPS 138
           T +S L     S    P  A  P +  P S A  + +AS F + P+RPS
Sbjct: 545 TATSSLYIPAPSRPVTPGGAPEPPA--PPSAAAMTSTASIFLSAPLRPS 591


>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
          Length = 753

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 32  SPSPGP--TGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFS 89
           SP+P P  + Q   PLPS +   PS +P  G P     + P+                  
Sbjct: 279 SPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPV------------------ 320

Query: 90  TFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAVFSQSASFFSAVPVRPS 138
           T +S L     S    P  A  P +  P S A  + +AS F + P+RPS
Sbjct: 321 TATSSLYIPAPSRPVTPGGAPEPPA--PPSAAAMTSTASIFLSAPLRPS 367


>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
           polymerase [Homo sapiens]
          Length = 1327

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 5   APGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGA 64
           A G  P  +GS +   PSS   P    S SP   G   A  P  +G+S ++   PG  G 
Sbjct: 113 AAGVAPNPAGSGSNNSPSSSSSPTSSSSSSPSSPGSSLAESPEAAGVSSTAPLGPGAAGP 172

Query: 65  TLGASPLLPGGSRKI 79
             G  P + G  R++
Sbjct: 173 GTGV-PAVSGALREL 186


>gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo
           sapiens]
          Length = 327

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 32  SPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLLPG--GSRKIQKFLLRSK 87
           SP+ GP+G  + P P+ + L+PS +   G  GA+   +PL P   G   ++K +L+SK
Sbjct: 129 SPATGPSGAQEVPGPA-AALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKEVLKSK 185


>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
          Length = 508

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 13  SGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLL 72
           SGS      SS+ +P  + +PSP   G +   +P  SG  P+    P  P +T+ A+P  
Sbjct: 246 SGSRENSGSSSIGIPIAVPTPSPPTIGPENISVPPPSGAPPAPPLAPLLPVSTVIAAPGS 305

Query: 73  PGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS-TAHLPSSWFPNSTAVFSQSASFFS 131
             GS+        S+ ++ +S   S  Y   + PS TA   +    N   ++SQ++   +
Sbjct: 306 APGSQYGTMTRQISRHNSTTSSTSSGGY--RRTPSVTAQFSAQPHVNGGPLYSQNSISIA 363

Query: 132 AVP 134
             P
Sbjct: 364 PPP 366


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 9   PPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSG-LSPSSSPTPGCPGATLG 67
           PP    +     PSS   P    SP    T Q  +PLP LS  +SPS SP P        
Sbjct: 785 PPPLLPTVPLPAPSSSASPHPCPSPLSNATAQ--SPLPILSPTVSPSPSPIPPVEPLMSA 842

Query: 68  ASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS 107
           ASP  P  S         S FS+ SS    SP   S + S
Sbjct: 843 ASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISS 882


>gi|20336260 retinoblastoma protein-binding zinc finger protein
            isoform b [Homo sapiens]
          Length = 1682

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 9    PPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSG-LSPSSSPTPGCPGATLG 67
            PP    +     PSS   P    SP    T Q  +PLP LS  +SPS SP P        
Sbjct: 986  PPPLLPTVPLPAPSSSASPHPCPSPLSNATAQ--SPLPILSPTVSPSPSPIPPVEPLMSA 1043

Query: 68   ASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS 107
            ASP  P  S         S FS+ SS    SP   S + S
Sbjct: 1044 ASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISS 1083


>gi|20336258 retinoblastoma protein-binding zinc finger protein
            isoform a [Homo sapiens]
          Length = 1718

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 9    PPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSG-LSPSSSPTPGCPGATLG 67
            PP    +     PSS   P    SP    T Q  +PLP LS  +SPS SP P        
Sbjct: 986  PPPLLPTVPLPAPSSSASPHPCPSPLSNATAQ--SPLPILSPTVSPSPSPIPPVEPLMSA 1043

Query: 68   ASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS 107
            ASP  P  S         S FS+ SS    SP   S + S
Sbjct: 1044 ASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISS 1083


>gi|30181244 doublecortin isoform c [Homo sapiens]
          Length = 360

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 7   GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
           G P  T+G      P +   P    + SPGP  + K+P  S +G S S   TP    + +
Sbjct: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329

Query: 67  GASPLLPGGSRK 78
            ++P  PG  RK
Sbjct: 330 -STPTSPGSLRK 340


>gi|30181240 doublecortin isoform c [Homo sapiens]
          Length = 360

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 7   GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
           G P  T+G      P +   P    + SPGP  + K+P  S +G S S   TP    + +
Sbjct: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329

Query: 67  GASPLLPGGSRK 78
            ++P  PG  RK
Sbjct: 330 -STPTSPGSLRK 340


>gi|30181246 doublecortin isoform a [Homo sapiens]
          Length = 441

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 7   GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
           G P  T+G      P +   P    + SPGP  + K+P  S +G S S   TP    + +
Sbjct: 357 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 410

Query: 67  GASPLLPGGSRK 78
            ++P  PG  RK
Sbjct: 411 -STPTSPGSLRK 421


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.128    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,562,950
Number of Sequences: 37866
Number of extensions: 588911
Number of successful extensions: 4135
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 469
Number of HSP's that attempted gapping in prelim test: 3113
Number of HSP's gapped (non-prelim): 1409
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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