Guide to the Human Genome
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Name: LOC100287322 Sequence: fasta or formatted (104aa) NCBI GI: 239743289
Description:

PREDICTED: hypothetical protein XP_002342818

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         15           3
 C cysteine            1.9          2           1
 D aspartate           2.9          3           1
 E glutamate           3.8          4           1
 F phenylalanine       1.0          1           1
 G glycine             9.6         10           2
 H histidine           1.0          1           1
 I isoleucine          0.0          0           0
 K lysine              1.9          2           1
 L leucine             1.0          1           1
 M methionine          3.8          4           1
 N asparagine          0.0          0           0
 P proline            13.5         14           3
 Q glutamine           3.8          4           1
 R arginine           18.3         19           5
 S serine             11.5         12           3
 T threonine           6.7          7           1
 V valine              4.8          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342818 
LOC100291176          1.000   PREDICTED: hypothetical protein XP_002346954 
ABL1                  0.064   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.064   c-abl oncogene 1, receptor tyrosine kinase isoform b...
LOC100292592          0.064   PREDICTED: hypothetical protein 
LOC100289939          0.064   PREDICTED: hypothetical protein XP_002347821 
LOC100288866          0.064   PREDICTED: hypothetical protein XP_002343571 
SRRM1                 0.053   serine/arginine repetitive matrix 1 
MCTP1                 0.053   multiple C2 domains, transmembrane 1 isoform L [Hom...
SRRM2                 0.053   splicing coactivator subunit SRm300 
FLJ39639              0.048   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.048   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.048   PREDICTED: hypothetical protein LOC283876 
LOC728650             0.048   PREDICTED: hypothetical protein 
FAM171A2              0.043   family with sequence similarity 171, member A2 [Hom...
PLCH2                 0.043   phospholipase C, eta 2 
LOC100129036          0.043   PREDICTED: hypothetical protein 
LOC100129036          0.043   PREDICTED: hypothetical protein 
LOC100129036          0.043   PREDICTED: hypothetical protein 
TBX1                  0.043   T-box 1 isoform B 
TBX1                  0.043   T-box 1 isoform C 
TBX1                  0.043   T-box 1 isoform A 
TSC22D2               0.043   TSC22 domain family, member 2 
KIAA0368              0.043   KIAA0368 protein 
LOC389333             0.043   hypothetical protein LOC389333 
FLJ34208              0.037   PREDICTED: hypothetical protein LOC401106 
LOC648822             0.037   PREDICTED: similar to hCG2040565 
FLJ34208              0.037   PREDICTED: hypothetical protein LOC401106 
LOC648822             0.037   PREDICTED: similar to hCG2040565 
FLJ34208              0.037   PREDICTED: hypothetical protein LOC401106 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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