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Search of human proteins with 239749065
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo
sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo ... 271 1e-73
gi|239508743 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73
gi|239754505 PREDICTED: hypothetical protein XP_002346016 [Homo ... 267 1e-72
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 45 2e-05
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 45 2e-05
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 42 2e-04
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 40 4e-04
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 40 4e-04
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|239745104 PREDICTED: hypothetical protein XP_002343360 [Homo ... 39 0.001
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 39 0.001
gi|4827004 single-minded homolog 2 long isoform [Homo sapiens] 38 0.002
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens] 38 0.002
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 37 0.003
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 37 0.003
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 37 0.003
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 36 0.009
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 36 0.009
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 36 0.009
gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isofor... 36 0.009
gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isofor... 36 0.009
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.009
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.009
gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo ... 36 0.009
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 36 0.009
gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo ... 36 0.009
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 35 0.012
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 35 0.012
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 35 0.012
>gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo
sapiens]
Length = 128
Score = 271 bits (692), Expect = 1e-73
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA 60
MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA
Sbjct: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA 60
Query: 61 RPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK 120
RPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK
Sbjct: 61 RPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK 120
Query: 121 LIQIGLQI 128
LIQIGLQI
Sbjct: 121 LIQIGLQI 128
>gi|239508743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 271 bits (692), Expect = 1e-73
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA 60
MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA
Sbjct: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA 60
Query: 61 RPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK 120
RPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK
Sbjct: 61 RPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK 120
Query: 121 LIQIGLQI 128
LIQIGLQI
Sbjct: 121 LIQIGLQI 128
>gi|239754505 PREDICTED: hypothetical protein XP_002346016 [Homo
sapiens]
Length = 128
Score = 267 bits (683), Expect = 1e-72
Identities = 127/128 (99%), Positives = 127/128 (99%)
Query: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA 60
MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA
Sbjct: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACA 60
Query: 61 RPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK 120
RPV SHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK
Sbjct: 61 RPVVSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHK 120
Query: 121 LIQIGLQI 128
LIQIGLQI
Sbjct: 121 LIQIGLQI 128
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 44.7 bits (104), Expect = 2e-05
Identities = 43/128 (33%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPP----TVTEVGWGREVRRGF 56
M+PGPP PPP GD G S E P P + G G R
Sbjct: 112 MVPGPPAPPPSGDQQPAPSAGSGSTADL-------PEWPWPLQLLLLLAPGRGCARGRAG 164
Query: 57 EACARPVGSHSGA--PRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGP 114
E A+ GS S A PR C + G A+P P+ P PGG G PR A P
Sbjct: 165 EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQP---SHPGGA-GCCPRVCG-PAAGCLP 219
Query: 115 ECRSHKLI 122
C SH ++
Sbjct: 220 LCASHPVL 227
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 44.7 bits (104), Expect = 2e-05
Identities = 43/128 (33%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 1 MLPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPP----TVTEVGWGREVRRGF 56
M+PGPP PPP GD G S E P P + G G R
Sbjct: 112 MVPGPPAPPPSGDQQPAPSAGSGSTADL-------PEWPWPLQLLLLLAPGRGCARGRAG 164
Query: 57 EACARPVGSHSGA--PRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGP 114
E A+ GS S A PR C + G A+P P+ P PGG G PR A P
Sbjct: 165 EGRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQP---SHPGGA-GCCPRVCG-PAAGCLP 219
Query: 115 ECRSHKLI 122
C SH ++
Sbjct: 220 LCASHPVL 227
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 41.6 bits (96), Expect = 2e-04
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 12 GDTASRRLGG--VSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPVGSHSGA 69
G+ A R GG V+ RPGR+R RG GR R T G E R ++C + G
Sbjct: 176 GEFAGRGAGGARVTHRPGRLRPRGRGRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQ 235
Query: 70 PRVCRAEGAASP-------GPPSSSPHLTRRPGGPWG 99
RV +AEGA + GP P + +R GG G
Sbjct: 236 RRVLKAEGARARARGGVCFGP---RPGMQKRSGGGSG 269
Score = 28.5 bits (62), Expect = 1.5
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARP 62
PGP PP ++R ++P R RRRG R PP +T G R G A AR
Sbjct: 57 PGPLGRPPTRAGPAQRSS--CTQPHRRRRRGT--RRLPPALTPAGPYHSARPGGGARARA 112
Query: 63 VGSHSGAPRVCRAEGAASPGPPSSSP 88
P P PS +P
Sbjct: 113 ARVSPPTP----PRSGLDPAVPSPTP 134
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 41.6 bits (96), Expect = 2e-04
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 12 GDTASRRLGG--VSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPVGSHSGA 69
G+ A R GG V+ RPGR+R RG GR R T G E R ++C + G
Sbjct: 176 GEFAGRGAGGARVTHRPGRLRPRGRGRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQ 235
Query: 70 PRVCRAEGAASP-------GPPSSSPHLTRRPGGPWG 99
RV +AEGA + GP P + +R GG G
Sbjct: 236 RRVLKAEGARARARGGVCFGP---RPGMQKRSGGGSG 269
Score = 28.5 bits (62), Expect = 1.5
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARP 62
PGP PP ++R ++P R RRRG R PP +T G R G A AR
Sbjct: 57 PGPLGRPPTRAGPAQRSS--CTQPHRRRRRGT--RRLPPALTPAGPYHSARPGGGARARA 112
Query: 63 VGSHSGAPRVCRAEGAASPGPPSSSP 88
P P PS +P
Sbjct: 113 ARVSPPTP----PRSGLDPAVPSPTP 134
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 40.4 bits (93), Expect = 4e-04
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 3 PGPPLPP-PPGDTASRRLGGVSSRPGRIRRRGL----GRERPPPTVTEVGWGREVRRGFE 57
PGPP PP PPG +R G RPG G+ G P E G G RG
Sbjct: 1777 PGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP 1836
Query: 58 ACARPVG-SHSGAPRVCRAEGAASPGPPSSSPHL-TRRPGGPWG 99
P G S +G P + G PGPP + R P GP G
Sbjct: 1837 GPPGPQGESRTGPPGSTGSRG--PPGPPGRPGNSGIRGPPGPPG 1878
Score = 30.8 bits (68), Expect = 0.30
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 2 LPGPPLPP------PPGDTASRRLGGVSSRPGRIRRRG 33
LPGPP P PPG T SR G RPG RG
Sbjct: 1835 LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRG 1872
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 40.4 bits (93), Expect = 4e-04
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 3 PGPPLPP-PPGDTASRRLGGVSSRPGRIRRRGL----GRERPPPTVTEVGWGREVRRGFE 57
PGPP PP PPG +R G RPG G+ G P E G G RG
Sbjct: 2941 PGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP 3000
Query: 58 ACARPVG-SHSGAPRVCRAEGAASPGPPSSSPHL-TRRPGGPWG 99
P G S +G P + G PGPP + R P GP G
Sbjct: 3001 GPPGPQGESRTGPPGSTGSRG--PPGPPGRPGNSGIRGPPGPPG 3042
Score = 30.8 bits (68), Expect = 0.30
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 2 LPGPPLPP------PPGDTASRRLGGVSSRPGRIRRRG 33
LPGPP P PPG T SR G RPG RG
Sbjct: 2999 LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRG 3036
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 38.5 bits (88), Expect = 0.001
Identities = 40/139 (28%), Positives = 49/139 (35%), Gaps = 15/139 (10%)
Query: 2 LPGPPLPPPPGDTASRRLGGVSS-------RPGRIRRRGLGRERPPPTVTEVGWGREVRR 54
LP P P S L GV S PGR R P T+ G R
Sbjct: 269 LPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSAPSSREPRQTKRRVGSRARA 328
Query: 55 GFEACARPV-GSHSGA------PRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASL 107
G A P + GA PR ++G A PP+S+PH R G P A R
Sbjct: 329 GAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALADREGR- 387
Query: 108 RALSAGPECRSHKLIQIGL 126
R+L + Q+ L
Sbjct: 388 RSLVPQTSIQGQNFAQLSL 406
>gi|239745104 PREDICTED: hypothetical protein XP_002343360 [Homo
sapiens]
Length = 152
Score = 38.5 bits (88), Expect = 0.001
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 2 LPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTV---TEVGWGREVRRGFEA 58
LPGP L P RRL PGR R G G+ PP T G +E
Sbjct: 49 LPGPALDTEPR-WDPRRLCEALRAPGR-RLEGAGQ--PPATSGGPATSGRSKEPWGHISG 104
Query: 59 CARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSA 101
C P G+ G+ R+C+ G + P R PG PW +A
Sbjct: 105 CGDPPGAFRGSGRICQ-------GTSGARPCFCRAPGYPWMAA 140
Score = 30.4 bits (67), Expect = 0.39
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 27 GRIRRRGLGRER--PPPTV-TEVGWGREVRRGFEACARPVGSHSGAPRVCRAEGAASPGP 83
G R G GRER P P + TE W + RR EA P R EGA P
Sbjct: 36 GDARTCGAGRERGLPGPALDTEPRW--DPRRLCEALRAPGR---------RLEGAGQPPA 84
Query: 84 PSSSPHLTRRPGGPWG 99
S P + R PWG
Sbjct: 85 TSGGPATSGRSKEPWG 100
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 38.5 bits (88), Expect = 0.001
Identities = 37/112 (33%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 3 PGPPLPPPP-------GDTASRRLGGVSSRPGRIR----RRGLGRERPPPTVTEVGWGRE 51
P PP PPPP G T + GG SS G R RR L P + G E
Sbjct: 161 PSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGHSRDFVLRRDLSATAPAAAMHGAPLGGE 220
Query: 52 VRRGFEACARPVGSHSGAPRVCRAEGA-ASP---GPPSSSPHLTRRPGGPWG 99
R G + P A A G A P G P+ P L PG P G
Sbjct: 221 QRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPGG 272
>gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]
Length = 667
Score = 38.1 bits (87), Expect = 0.002
Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARP 62
P P PP +TA L P RR G + PP+ G RE A A
Sbjct: 504 PAKNPPEPPANTARHSLVPSYEAPAAAVRR-FGEDTAPPSFPSCGHYREEPALGPAKAAR 562
Query: 63 VGSHSGA--------PRVCRAEGAASPGPPSSSP-------HLTRRPGGPWGSAPRSASL 107
+ GA P C +PG P+ P + R G G+AP ++ L
Sbjct: 563 QAARDGARLALARAAPECCAPPTPEAPGAPAQLPFVLLNYHRVLARRGPLGGAAPAASGL 622
Query: 108 RALSAGPECRSHKL 121
GPE + L
Sbjct: 623 ACAPGGPEAATGAL 636
>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
Length = 196
Score = 37.7 bits (86), Expect = 0.002
Identities = 43/142 (30%), Positives = 53/142 (37%), Gaps = 31/142 (21%)
Query: 3 PGPPLPPP-PGDTASRRL-----GGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGF 56
PGP PPP P TA RL + R RR+GL R P R + G
Sbjct: 19 PGPETPPPAPAPTARPRLRLPAPDWRARRADLTRRKGLRRGEP--------GSRGLGEGP 70
Query: 57 EACARP-------VGSHSGAPRVCRAEGAASPGPPSSSPHLTRRP----GGPWGS---AP 102
A RP S GAP RA+ PG SP L P G WGS
Sbjct: 71 AAARRPQVQSIDTTPSGEGAPSFSRAQ---RPGRSGPSPSLASDPAPGRGAAWGSLRPGK 127
Query: 103 RSASLRALSAGPECRSHKLIQI 124
R +L + + G R + ++
Sbjct: 128 RQQALESEAGGRASREARAAEV 149
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 25/118 (21%)
Query: 5 PPLPPPPGDTASRRLGGVSSRPGRI-------RRRGLGRERPPPTVTEVGWGREVRRGFE 57
P PPPPG S ++R GR+ RRG G RPPP V GW +
Sbjct: 1136 PLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCP-GWSPPAK---- 1190
Query: 58 ACARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPE 115
S AP+ + P PPS P + GP R S + G E
Sbjct: 1191 ---------SLAPK----KPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGME 1235
Score = 32.3 bits (72), Expect = 0.10
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 5 PPLPPPPGDTASRRL--GGVSSRPGRIRRRGLGRER-PPPTVTEVGWGREVRRGFEACAR 61
PP P G R GG SS P + RER PP ++ W +V A R
Sbjct: 745 PPGVHPSGLVPRERSDSGGSSSEPFDRHAPAMLRERGTPPVDPKLAWVGDVFTATPAEPR 804
Query: 62 PVGS--HSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAP 102
P+ S A + + +P P P+L PG P AP
Sbjct: 805 PLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPENGAP 847
Score = 30.4 bits (67), Expect = 0.39
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARP 62
PG P GD S SRP R GL PPP+ + V R + P
Sbjct: 1419 PGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAV-----FRLDQVIHSNP 1473
Query: 63 VGSHSGAPRVCRAEGA--ASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSH 119
G ++ +G+ A G P P L + P GP P + +++G H
Sbjct: 1474 AGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPH 1532
Score = 28.9 bits (63), Expect = 1.1
Identities = 40/138 (28%), Positives = 48/138 (34%), Gaps = 38/138 (27%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPP-PTVTEVGWGR----------- 50
PGPP P PP R G PG RG +PP P + W +
Sbjct: 403 PGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISL 462
Query: 51 -----------EVRRGFE----ACA---RPVGSHSGAP-RVCRAEGAASPG-------PP 84
E RR E ACA + + GAP + +AE AA P PP
Sbjct: 463 AVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPP 522
Query: 85 SSSPHLTRRPGGPWGSAP 102
+ L P P SAP
Sbjct: 523 AVPKELPAPPAPPPASAP 540
Score = 26.6 bits (57), Expect = 5.7
Identities = 33/124 (26%), Positives = 40/124 (32%), Gaps = 35/124 (28%)
Query: 3 PGPPLPPPPGDTAS----------------RRLGGVSSRPGRIRRRG------------- 33
PG PLPPPP +++ + L +SSR G + G
Sbjct: 1448 PGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAP 1507
Query: 34 LGRERPPPTVTE---VGWGREVRRGFEACARPVGSHSGAPRVCRAEGAASPGPPSSSPHL 90
G PPT E V G FE V G P R SP PP
Sbjct: 1508 QGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTP---RDSAGVSPFPPKRRERP 1564
Query: 91 TRRP 94
R+P
Sbjct: 1565 PRKP 1568
Score = 26.2 bits (56), Expect = 7.4
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 5 PPLPPPPGDTASRRLGGVSSRPG-RIRRRGLGRERP-----PPTVTEVGWGR----EVRR 54
PP+PPPP AS + PG I R L P PP EV + +
Sbjct: 826 PPVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEP 885
Query: 55 GFEACARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSA 105
E A+ G +G + R G+ GPP P R WG P S+
Sbjct: 886 PKEETAQLTGPEAGR-KPARGVGSGGQGPP--PPRRESRTETRWGPRPGSS 933
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 23/121 (19%)
Query: 9 PPPGDTAS----------RRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEA 58
PPP +AS +R G + G + PT+ ++ RG++
Sbjct: 251 PPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQG 310
Query: 59 CARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRS 118
P G +SG P+ +G A GP + WG+A +A+ A S G + RS
Sbjct: 311 Y--PGGDYSGGPQ----DGGAGKGPADMASQC-------WGAAAAAAAAAAASGGAQQRS 357
Query: 119 H 119
H
Sbjct: 358 H 358
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 23/121 (19%)
Query: 9 PPPGDTAS----------RRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEA 58
PPP +AS +R G + G + PT+ ++ RG++
Sbjct: 251 PPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQG 310
Query: 59 CARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRS 118
P G +SG P+ +G A GP + WG+A +A+ A S G + RS
Sbjct: 311 Y--PGGDYSGGPQ----DGGAGKGPADMASQC-------WGAAAAAAAAAAASGGAQQRS 357
Query: 119 H 119
H
Sbjct: 358 H 358
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.8 bits (81), Expect = 0.009
Identities = 32/105 (30%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 3 PGPPLPP-------PPGDTASRRLGGVSSRPGRIRRRG-LGRERPPPTVTEVG----WGR 50
PGPP P PPG G R G +G G E PP VG G+
Sbjct: 1356 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Query: 51 EVRRGFEACARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPG 95
G PVG G P +G P P P L PG
Sbjct: 1416 PGPEGLRGIPGPVG-EQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1459
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.8 bits (81), Expect = 0.009
Identities = 32/105 (30%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 3 PGPPLPP-------PPGDTASRRLGGVSSRPGRIRRRG-LGRERPPPTVTEVG----WGR 50
PGPP P PPG G R G +G G E PP VG G+
Sbjct: 1305 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Query: 51 EVRRGFEACARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPG 95
G PVG G P +G P P P L PG
Sbjct: 1365 PGPEGLRGIPGPVG-EQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1408
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.8 bits (81), Expect = 0.009
Identities = 32/105 (30%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 3 PGPPLPP-------PPGDTASRRLGGVSSRPGRIRRRG-LGRERPPPTVTEVG----WGR 50
PGPP P PPG G R G +G G E PP VG G+
Sbjct: 1344 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 51 EVRRGFEACARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPG 95
G PVG G P +G P P P L PG
Sbjct: 1404 PGPEGLRGIPGPVG-EQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1447
>gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isoform B
[Homo sapiens]
Length = 336
Score = 35.8 bits (81), Expect = 0.009
Identities = 35/121 (28%), Positives = 42/121 (34%), Gaps = 44/121 (36%)
Query: 2 LPGPPLPPPPGDTASRRL--GGVSSRPG-----RIRRRGLGRERPPPTVTEVGWGREVRR 54
L GP LPPPP D +SR +S+ PG RR G PPP
Sbjct: 28 LSGPELPPPPPDRSSRLCVPAPLSTAPGAREGRSARRAARGNLEPPP------------- 74
Query: 55 GFEACARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGP 114
RA A P P L RRPG APR +R++ P
Sbjct: 75 -------------------RASRPARPLRPGLQQRLRRRPG-----APRPRDVRSIFEQP 110
Query: 115 E 115
+
Sbjct: 111 Q 111
>gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isoform A
[Homo sapiens]
Length = 418
Score = 35.8 bits (81), Expect = 0.009
Identities = 35/121 (28%), Positives = 42/121 (34%), Gaps = 44/121 (36%)
Query: 2 LPGPPLPPPPGDTASRRL--GGVSSRPG-----RIRRRGLGRERPPPTVTEVGWGREVRR 54
L GP LPPPP D +SR +S+ PG RR G PPP
Sbjct: 28 LSGPELPPPPPDRSSRLCVPAPLSTAPGAREGRSARRAARGNLEPPP------------- 74
Query: 55 GFEACARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAGP 114
RA A P P L RRPG APR +R++ P
Sbjct: 75 -------------------RASRPARPLRPGLQQRLRRRPG-----APRPRDVRSIFEQP 110
Query: 115 E 115
+
Sbjct: 111 Q 111
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 35.8 bits (81), Expect = 0.009
Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 3 PGPPLPPPPGDTASRRL----GGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEA 58
PG P PPPP A+ R+ G V +P R G+G P + G R +
Sbjct: 30 PGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAG---PTRSAGTS 86
Query: 59 CARPVGSHSGAPRVCRAEGA--ASPGPPSSSPHL--TRRPG 95
P + R RA A SPGP SS T RPG
Sbjct: 87 SRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Score = 28.1 bits (61), Expect = 2.0
Identities = 38/145 (26%), Positives = 45/145 (31%), Gaps = 32/145 (22%)
Query: 1 MLPGPPLPPPPGDTASRRLGG---------VSSRPGRIRRRGLGRE-----RPPPTVT-- 44
+ PGPP PPP + S L G +S P +R G E PPP
Sbjct: 607 LAPGPP--PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELA 664
Query: 45 ---EVGWGREVR-----RGFEACARP------VGSHSGAPRVCRAEGAASPGPPSSSPHL 90
W R RG P GS G + EG S P +
Sbjct: 665 ACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDP 724
Query: 91 TRRPGGPWGSAPRSASLRALSAGPE 115
PG G A A A S P+
Sbjct: 725 GPSPGTSGGKAAAGAGAGASSRSPK 749
Score = 27.3 bits (59), Expect = 3.3
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 26 PGRIRRRGLGRERPPPTVTEVG---WGREVRRGFEACARPVGSHSGAPRVCRAEGAASPG 82
PG + R G RPPP VT G G + A G GA E A G
Sbjct: 22 PGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGA---TIPESAPRAG 78
Query: 83 PPSSSPHLTRRPGG---PWGSAPRSASLRALSAGP 114
P S+ +R P G R+ + S GP
Sbjct: 79 PTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGP 113
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 35.8 bits (81), Expect = 0.009
Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 3 PGPPLPPPPGDTASRRL----GGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEA 58
PG P PPPP A+ R+ G V +P R G+G P + G R +
Sbjct: 30 PGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAG---PTRSAGTS 86
Query: 59 CARPVGSHSGAPRVCRAEGA--ASPGPPSSSPHL--TRRPG 95
P + R RA A SPGP SS T RPG
Sbjct: 87 SRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Score = 28.1 bits (61), Expect = 2.0
Identities = 38/145 (26%), Positives = 45/145 (31%), Gaps = 32/145 (22%)
Query: 1 MLPGPPLPPPPGDTASRRLGG---------VSSRPGRIRRRGLGRE-----RPPPTVT-- 44
+ PGPP PPP + S L G +S P +R G E PPP
Sbjct: 876 LAPGPP--PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELA 933
Query: 45 ---EVGWGREVR-----RGFEACARP------VGSHSGAPRVCRAEGAASPGPPSSSPHL 90
W R RG P GS G + EG S P +
Sbjct: 934 ACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDP 993
Query: 91 TRRPGGPWGSAPRSASLRALSAGPE 115
PG G A A A S P+
Sbjct: 994 GPSPGTSGGKAAAGAGAGASSRSPK 1018
Score = 27.3 bits (59), Expect = 3.3
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 26 PGRIRRRGLGRERPPPTVTEVG---WGREVRRGFEACARPVGSHSGAPRVCRAEGAASPG 82
PG + R G RPPP VT G G + A G GA E A G
Sbjct: 22 PGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGA---TIPESAPRAG 78
Query: 83 PPSSSPHLTRRPGG---PWGSAPRSASLRALSAGP 114
P S+ +R P G R+ + S GP
Sbjct: 79 PTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGP 113
Score = 26.2 bits (56), Expect = 7.4
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 5 PPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPVG 64
PP PP A+ LG +SS P P P+ T+ R V A
Sbjct: 282 PPQVTPPRKDAAPALGPLSSSP---------LATPSPSGTKA---RPVPPPDNAATPLPA 329
Query: 65 SHSGAPRVCRAEGAASPGP--PSSSPHLTRRPGGPWGSAPRSASLRALSAGPECRSHKLI 122
+ +P + A P P P S L P P AP S + + A P ++ I
Sbjct: 330 TLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPI 389
Query: 123 QI 124
Q+
Sbjct: 390 QV 391
>gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo
sapiens]
Length = 300
Score = 35.8 bits (81), Expect = 0.009
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 1 MLPGPPLPPPPGD--TASRRLGGVSSRPGRIRRRGLGRERPPPTVT-------EVGWGRE 51
M+ PLPP G GG ++ GR R+ R +PP + G GR
Sbjct: 1 MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQ---RFQPPAAASLPRIGSAPPGGGRA 57
Query: 52 VRRGFEACARPVGSHSGAPRVCRAEGAASPGPPS-SSPHLTRRPGGPWGSA 101
+RRG AR VC G SPG P SP R PG P G+A
Sbjct: 58 LRRGGRGAARRKRKRRAPAPVCHHRG--SPGSPKFVSP--PRSPGSPAGAA 104
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.8 bits (81), Expect = 0.009
Identities = 36/121 (29%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 3 PGPPLPPPPGDTASRRL----GGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVR----- 53
PG P PPPP A+ R+ G V +P R G+G P + G R R
Sbjct: 30 PGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPPASG 89
Query: 54 RGFEACARPVGSHSGAPRVCRAEGAASPGP-PSSSPHLTRRPGGPWGSAPRSASLRALSA 112
RG A S RA G PGP ++ G A + ALSA
Sbjct: 90 RGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSA 149
Query: 113 G 113
G
Sbjct: 150 G 150
Score = 28.1 bits (61), Expect = 2.0
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 26 PGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPVGSHSGAPRVCRAEGAASP-GPP 84
PG + R G RPPP VT A VG A R GA P P
Sbjct: 22 PGLLTPRPPGSPRPPPPVTPAA------LRVLGAAGAVGRKPLAERAGGIGGATIPESAP 75
Query: 85 SSSPHLTRRPGGPWGSAPRSASLRALSAGP 114
+ P T RP G R+ + S GP
Sbjct: 76 RAGPTRTSRPPAS-GRGERAPPAKNTSPGP 104
Score = 28.1 bits (61), Expect = 2.0
Identities = 38/145 (26%), Positives = 45/145 (31%), Gaps = 32/145 (22%)
Query: 1 MLPGPPLPPPPGDTASRRLGG---------VSSRPGRIRRRGLGRE-----RPPPTVT-- 44
+ PGPP PPP + S L G +S P +R G E PPP
Sbjct: 568 LAPGPP--PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELA 625
Query: 45 ---EVGWGREVR-----RGFEACARP------VGSHSGAPRVCRAEGAASPGPPSSSPHL 90
W R RG P GS G + EG S P +
Sbjct: 626 ACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDP 685
Query: 91 TRRPGGPWGSAPRSASLRALSAGPE 115
PG G A A A S P+
Sbjct: 686 GPSPGTSGGKAAAGAGAGASSRSPK 710
>gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo
sapiens]
Length = 300
Score = 35.8 bits (81), Expect = 0.009
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 1 MLPGPPLPPPPGD--TASRRLGGVSSRPGRIRRRGLGRERPPPTVT-------EVGWGRE 51
M+ PLPP G GG ++ GR R+ R +PP + G GR
Sbjct: 1 MILADPLPPHGGRLRVGPCECGGGAAEAGRGPRQ---RFQPPAAASLPRIGSAPPGGGRA 57
Query: 52 VRRGFEACARPVGSHSGAPRVCRAEGAASPGPPS-SSPHLTRRPGGPWGSA 101
+RRG AR VC G SPG P SP R PG P G+A
Sbjct: 58 LRRGGRGAARRKRKRRAPAPVCHHRG--SPGSPKFVSP--PRSPGSPAGAA 104
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARP 62
P PPLPPPP R ++P LG RPP + G + V+ G A
Sbjct: 454 PPPPLPPPPRREPCHRAWPGPAQP-------LGNLRPPVQQSAPGGRKCVKEGE---ATG 503
Query: 63 VGSHSGAPRVCRAEGAA-----------SPGPPS 85
+ P+ CR G A SPGPP+
Sbjct: 504 PSKETRGPKECRQVGEAVLGEGGAPMQSSPGPPN 537
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARP 62
P PPLPPPP R ++P LG RPP + G + V+ G A
Sbjct: 782 PPPPLPPPPRREPCHRAWPGPAQP-------LGNLRPPVQQSAPGGRKCVKEGE---ATG 831
Query: 63 VGSHSGAPRVCRAEGAA-----------SPGPPS 85
+ P+ CR G A SPGPP+
Sbjct: 832 PSKETRGPKECRQVGEAVLGEGEAPMQSSPGPPN 865
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 3 PGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARP 62
P PPLPPPP R ++P LG RPP + G + V+ G A
Sbjct: 782 PPPPLPPPPRREPCHRAWPGPAQP-------LGNLRPPVQQSAPGGRKCVKEGE---ATG 831
Query: 63 VGSHSGAPRVCRAEGAA-----------SPGPPS 85
+ P+ CR G A SPGPP+
Sbjct: 832 PSKETRGPKECRQVGEAVLGEGEAPMQSSPGPPN 865
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,473,748
Number of Sequences: 37866
Number of extensions: 565303
Number of successful extensions: 6327
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 624
Number of HSP's that attempted gapping in prelim test: 4959
Number of HSP's gapped (non-prelim): 1869
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.