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Search of human proteins with 239748872
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748872 PREDICTED: hypothetical protein [Homo sapiens]
(59 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169043 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-28
gi|239748872 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-28
gi|239742901 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-28
gi|7705431 coiled-coil domain containing 72 [Homo sapiens] 77 3e-15
gi|169161767 PREDICTED: hypothetical protein [Homo sapiens] 74 3e-14
gi|169161534 PREDICTED: hypothetical protein [Homo sapiens] 74 3e-14
gi|169162811 PREDICTED: hypothetical protein [Homo sapiens] 74 3e-14
gi|169170025 PREDICTED: hypothetical protein [Homo sapiens] 65 9e-12
gi|239508822 PREDICTED: hypothetical protein [Homo sapiens] 65 9e-12
gi|169164035 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-06
gi|169163250 PREDICTED: hypothetical protein [Homo sapiens] 47 3e-06
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 35 0.010
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 34 0.022
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 34 0.022
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 33 0.050
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 33 0.050
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.084
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 32 0.11
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 32 0.11
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 32 0.14
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 32 0.14
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 32 0.14
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 32 0.14
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 32 0.14
gi|21735415 centromere protein B [Homo sapiens] 31 0.19
gi|118600967 shroom family member 4 [Homo sapiens] 31 0.25
gi|239749652 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|194097365 FtsJ homolog 3 [Homo sapiens] 31 0.25
gi|46094051 TSPY-like 4 [Homo sapiens] 31 0.25
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 31 0.25
>gi|169169043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 120 bits (301), Expect = 2e-28
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239748872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 120 bits (301), Expect = 2e-28
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239742901 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 120 bits (301), Expect = 2e-28
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|7705431 coiled-coil domain containing 72 [Homo sapiens]
Length = 64
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSG EGGKKKPLKQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
>gi|169161767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 73.9 bits (180), Expect = 3e-14
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSG EGGKKKP KQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
>gi|169161534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 73.9 bits (180), Expect = 3e-14
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSG EGGKKKP KQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
>gi|169162811 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 73.9 bits (180), Expect = 3e-14
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSG EGGKKKP KQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
>gi|169170025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 65.5 bits (158), Expect = 9e-12
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSG +GGKKK LKQPKKQAKE DEE +A K+++K E ++ +EL + KAVGK PL G
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNM--KAVGKWPLATGG 57
>gi|239508822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 65.5 bits (158), Expect = 9e-12
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
MSG +GGKKK LKQPKKQAKE DEE +A K+++K E ++ +EL + KAVGK PL G
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNM--KAVGKWPLATGG 57
>gi|169164035 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 47.0 bits (110), Expect = 3e-06
Identities = 25/38 (65%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAE 38
MSG +GGKK+PLKQ K+QAKEMD+E A K +K+ EAE
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFK-QKQTEAE 37
>gi|169163250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 47.0 bits (110), Expect = 3e-06
Identities = 25/38 (65%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAE 38
MSG +GGKK+PLKQ K+QAKEMD+E A K +K+ EAE
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFK-QKQTEAE 37
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPL 55
E KKK ++ KK+ + E++E KREK+ E + +++KV+ A+ P+
Sbjct: 707 EKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPV 757
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 5 EGGKKKPLKQPK------KQAKEMDEEQEASKREKK-GEAEETQELKVKAKAVGKGPLP 56
E KKK K+ K K+ KE + E+E +REK+ E E+ + K+K + V P P
Sbjct: 698 EKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAPSP 756
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 9 KKPLK-QPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGK 52
KK LK + KK+ K+ D E+E K + K + ++ + K K K G+
Sbjct: 526 KKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKEKDKETGR 570
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 4 LEGGKKKPLKQPKKQAKEMDEEQEASKRE---------KKGEAEETQELKVKAKAVGKGP 54
LE K+P+K+P ++ M+ E+E K E K+ E E ++ KAK V P
Sbjct: 448 LEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATAP 507
Query: 55 LP 56
+P
Sbjct: 508 IP 509
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 4 LEGGKKKPLKQPKKQAKEMDEEQEASKRE---------KKGEAEETQELKVKAKAVGKGP 54
LE K+P+K+P ++ M+ E+E K E K+ E E ++ KAK V P
Sbjct: 469 LEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATAP 528
Query: 55 LP 56
+P
Sbjct: 529 IP 530
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.1 bits (74), Expect = 0.050
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVG 51
K+K ++ K++ KE ++E+E K++KK + ++ ++ K+ AK G
Sbjct: 76 KEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCG 119
Score = 30.0 bits (66), Expect = 0.42
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVK 46
E K+K ++ K++ KE ++E+E K++KK + ++ ++L K
Sbjct: 75 EKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAK 116
Score = 28.9 bits (63), Expect = 0.93
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKA 49
K+K ++ K++ KE ++E+E K +KK + ++ ++ K K A
Sbjct: 74 KEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNA 115
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKV 45
E K+K ++ K++ KE ++E++ K++KK + ++ KV
Sbjct: 77 EKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKV 117
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 33.1 bits (74), Expect = 0.050
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 5 EGGKKKPLK--QPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
+G +K P+K Q KK+ KE E+Q +S+++K+G+ E + K K
Sbjct: 1381 DGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEK 1426
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 2 SGLEGG--KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
SG E G K++ +Q KKQ K E E + + E ++ KVKA+
Sbjct: 130 SGSESGSPKRRGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKAR 178
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 32.3 bits (72), Expect = 0.084
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQE 42
KKK + K++ KE +E++ KR+KK E EE +E
Sbjct: 43 KKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREE 77
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
E K+K ++ KK+ +E +EE+E + EK+ E +E + K K
Sbjct: 58 EEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKK 101
Score = 30.8 bits (68), Expect = 0.25
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
E KK+ K+ KK+ +E EE+E + E+K E E+ + + K K
Sbjct: 57 EEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKK 100
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGK 52
KK+ + + + E +EE+E ++EK+ E + +E K K K K
Sbjct: 7 KKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEK 51
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
K+K K+ +++ +E +EE+E ++E++ E EE + K K K
Sbjct: 63 KRKRKKKKEEEEREEEEEEEEEEKEEE-EKEEGRRRKKKKK 102
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
K+K K+ +++ +E +EE+E + E+K E ++ K + +
Sbjct: 65 KRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRR 105
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 16 KKQAKEMDEEQEASKREKKGEAEETQELK 44
KK+ E EE + SK+ KK E +ET+ELK
Sbjct: 200 KKRISEAKEELKESKKPKKDEVKETKELK 228
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 9 KKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
K+ LK+ KK K+ +E + K+ KKG E ++LK K +
Sbjct: 207 KEELKESKKPKKDEVKETKELKKVKKG---EIRDLKTKTR 243
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGK 52
KK+P K+ KK+ + ++E K EKK +E +E K + K + K
Sbjct: 693 KKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPK 737
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEET-QELKVKAKAVGKGP 54
KK+ K+PKK+ K+ +E K KK E +E +E K K + K P
Sbjct: 689 KKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLP 736
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
KK+ ++PKK+ + +++ K EK + E +E+K + K
Sbjct: 649 KKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIK 689
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 7 GKKKPLKQPKKQAKEMDEEQEASKREKKGEAEE 39
G K+P K +K+ +E DEE E + ++K E +E
Sbjct: 167 GAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 7 GKKKPLKQPKKQAKEMDEEQEASKREKKGEAEE 39
G K+P K +K+ +E DEE E + ++K E +E
Sbjct: 167 GAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 7 GKKKPLKQPKKQAKEMDEEQEASKREKKGEAEE 39
G K+P K +K+ +E DEE E + ++K E +E
Sbjct: 167 GAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 8 KKKPLKQPKKQAKEMD-EEQEASKREKKGEAEETQELKVKAKAVGK 52
+K+ KQ K++ KE +E+E K+EK+ E +E + K + KA G+
Sbjct: 732 EKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQKQEKKAQGR 777
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 7 GKKKPL---KQPKKQAKEMD-EEQEASKREKKGEAEETQELKVKAK 48
G PL K+ +KQ KE +E+E K+EK+ E E ++ K + K
Sbjct: 710 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREK 755
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELK 44
K++ ++ ++Q +E + E+E K+EK+ E +E + K
Sbjct: 726 KERQKQEKERQKQEKEREKERQKQEKEREKQEKEREK 762
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEH 58
E ++K ++ +K+ ++ ++E+E ++E++ + ++ Q K+ + GP H
Sbjct: 739 EKEREKERQKQEKEREKQEKEREKQEKERQKQEKKAQGRKLSLRRKADGPPGPH 792
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 7 GKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
GK+ L+ +++ +++ EE + +K E K + EE +ELK K +
Sbjct: 345 GKQLKLRAEREEKEKLKEEAKRAKEEAKKKKEEEKELKEKER 386
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 5 EGGKKKPLKQPKKQAKE-----MDEEQEASKREKKGEAEETQELKVK 46
E +K+ LK+ K+AKE +EE+E ++E++ + E+ ++ K +
Sbjct: 353 EREEKEKLKEEAKRAKEEAKKKKEEEKELKEKERREKREKDEKEKAE 399
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 9 KKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
K+ K+ K++AK+ EE++ K +++ E E E K KA+
Sbjct: 361 KEEAKRAKEEAKKKKEEEKELKEKERREKREKDE-KEKAE 399
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 31.2 bits (69), Expect = 0.19
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 2 SGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQE 42
+G GG + K E +EE+E + E++GE EE +E
Sbjct: 387 AGFGGGPNATITTSLKSEGEEEEEEEEEEEEEEGEGEEEEE 427
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 30.8 bits (68), Expect = 0.25
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQE 42
++K +Q +KQ +E +EE+E + E++ E EE +E
Sbjct: 1120 QQKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEE 1154
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 8 KKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQE 42
+K+ +Q K+Q +E +EE+E + E++ E E +E
Sbjct: 1121 QKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEE 1155
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 13 KQPKKQAKEMDEEQEASKREKKGEAEETQEL 43
KQ +++ +E +EE+E + E++ EE +EL
Sbjct: 1129 KQQEEEEEEEEEEEEEEEEEEEEAEEEEEEL 1159
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 14 QPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
Q +KQ ++ ++QE + E++ E EE +E + +A+
Sbjct: 1119 QQQKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAE 1153
>gi|239749652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 60
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 4 LEGGK--KKPLKQPKKQAKEMDEEQEASKREKKGEAEETQE 42
+EGGK K+ K+ +K+ KE +E+E +EKK + E+ ++
Sbjct: 1 MEGGKERKRGRKRERKKEKERKKEREKGNKEKKRKKEKEKD 41
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 7 GKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQ 41
G+K+ K+ K++ KE ++ + KR+K+ E + +
Sbjct: 10 GRKRERKKEKERKKEREKGNKEKKRKKEKEKDHLE 44
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 30.8 bits (68), Expect = 0.25
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 13 KQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAK 48
KQP K+ +E +EE++ ++ + +A+E ELK K K
Sbjct: 353 KQPSKEEEEEEEEEQLNQTLAEMKAQEVAELKRKKK 388
>gi|46094051 TSPY-like 4 [Homo sapiens]
Length = 414
Score = 30.8 bits (68), Expect = 0.25
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVG 51
MSGL+GG K PL Q A + + + +G EET+ +V A G
Sbjct: 1 MSGLDGGNKLPLAQTGGLAAPDHASGDPDRDQCQGLREETEATQVMANTGG 51
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPE 57
+G +++ + +++ +E EE+E K E + + EE E + K G GP P+
Sbjct: 1767 KGEEEEEELEEEEEEEEETEEEELGKEEIEEKEEERDEKEEKVSWAGIGPTPQ 1819
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 2 SGLEGGKKKPLKQPKKQ------AKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPL 55
S E GK K K+ + + KE EE++ + E++ E EE +E + + + +GK +
Sbjct: 1736 SSWEDGKGKQPKEDRPEHYPGLGKKEEGEEEKGEEEEEELEEEEEEEEETEEEELGKEEI 1795
Query: 56 PE 57
E
Sbjct: 1796 EE 1797
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEQEASKRE-------KKGEAEETQELKVKAKAVGKGPLPE 57
EG ++K ++ ++ +E +EE+E + E +K E + +E KV +G P PE
Sbjct: 1762 EGEEEKGEEEEEELEEEEEEEEETEEEELGKEEIEEKEEERDEKEEKVSWAGIGPTPQPE 1821
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.296 0.121 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,558,694
Number of Sequences: 37866
Number of extensions: 94691
Number of successful extensions: 2206
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 891
length of query: 59
length of database: 18,247,518
effective HSP length: 32
effective length of query: 27
effective length of database: 17,035,806
effective search space: 459966762
effective search space used: 459966762
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.