Guide to the Human Genome
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Name: LOC728416 Sequence: fasta or formatted (64aa) NCBI GI: 169170025
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {64aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4          6           1
 C cysteine            0.0          0           0
 D aspartate           3.1          2           1
 E glutamate          10.9          7           2
 F phenylalanine       3.1          2           1
 G glycine             9.4          6           2
 H histidine           0.0          0           0
 I isoleucine          1.6          1           1
 K lysine             32.8         21           3
 L leucine             6.2          4           1
 M methionine          3.1          2           1
 N asparagine          1.6          1           1
 P proline             3.1          2           1
 Q glutamine           7.8          5           1
 R arginine            0.0          0           0
 S serine              3.1          2           1
 T threonine           1.6          1           1
 V valine              1.6          1           1
 W tryptophan          1.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728416             1.000   PREDICTED: hypothetical protein 
CCDC72                0.781   coiled-coil domain containing 72 
LOC729973             0.733   PREDICTED: hypothetical protein 
LOC729973             0.733   PREDICTED: hypothetical protein 
LOC729973             0.733   PREDICTED: hypothetical protein 
LOC647188             0.381   PREDICTED: hypothetical protein 
LOC647188             0.381   PREDICTED: hypothetical protein 
LOC647188             0.381   PREDICTED: hypothetical protein 
LOC100131818          0.286   PREDICTED: hypothetical protein 
LOC100131818          0.286   PREDICTED: hypothetical protein 
NCOR1                 0.114   nuclear receptor co-repressor 1 
LOC100133698          0.114   PREDICTED: hypothetical protein 
BRD4                  0.095   bromodomain-containing protein 4 isoform short 
BRD4                  0.095   bromodomain-containing protein 4 isoform long 
GBP7                  0.095   guanylate binding protein 4-like 
PSIP1                 0.086   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.086   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.086   PC4 and SFRS1 interacting protein 1 isoform 2 
TAF3                  0.086   RNA polymerase II transcription factor TAFII140 [Ho...
CHAF1A                0.086   chromatin assembly factor 1, subunit A (p150) 
C9orf86               0.086   Rab-like GTP-binding protein 1 isoform 1 
HMGB1                 0.076   high-mobility group box 1 
SPAG17                0.076   sperm associated antigen 17 
EIF3C                 0.076   eukaryotic translation initiation factor 3, subunit ...
EIF3C                 0.076   eukaryotic translation initiation factor 3, subunit C...
AP3D1                 0.076   adaptor-related protein complex 3, delta 1 subunit ...
LOC100133599          0.076   PREDICTED: hypothetical protein 
TBC1D10B              0.076   TBC1 domain family, member 10B 
LOC645490             0.067   PREDICTED: similar to hCG1991922 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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