Guide to the Human Genome
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Name: LOC100131818 Sequence: fasta or formatted (171aa) NCBI GI: 169163250
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {171aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         13           2
 C cysteine            1.8          3           1
 D aspartate           4.7          8           2
 E glutamate           8.8         15           1
 F phenylalanine       1.8          3           1
 G glycine             5.3          9           2
 H histidine           2.9          5           2
 I isoleucine          2.3          4           1
 K lysine              6.4         11           2
 L leucine            10.5         18           2
 M methionine          1.2          2           1
 N asparagine          2.3          4           1
 P proline            10.5         18           2
 Q glutamine           7.0         12           1
 R arginine            5.3          9           1
 S serine              6.4         11           2
 T threonine           8.8         15           1
 V valine              4.7          8           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131818          1.000   PREDICTED: hypothetical protein 
LOC729973             0.107   PREDICTED: hypothetical protein 
LOC729973             0.107   PREDICTED: hypothetical protein 
LOC729973             0.107   PREDICTED: hypothetical protein 
CCDC72                0.104   coiled-coil domain containing 72 
LOC728416             0.092   PREDICTED: hypothetical protein 
LOC728416             0.092   PREDICTED: hypothetical protein 
LOC647188             0.067   PREDICTED: hypothetical protein 
LOC647188             0.067   PREDICTED: hypothetical protein 
LOC647188             0.067   PREDICTED: hypothetical protein 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
ACOT2                 0.024   acyl-CoA thioesterase 2 
ACOT1                 0.024   acyl-CoA thioesterase 1 
IPO7                  0.024   importin 7 
C14orf145             0.021   hypothetical protein LOC145508 
KIAA1328              0.018   hypothetical protein LOC57536 
BCLAF1                0.018   BCL2-associated transcription factor 1 isoform 2 [H...
NRK                   0.015   Nik related kinase 
QKI                   0.015   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.015   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.015   quaking homolog, KH domain RNA binding isoform HQK-6...
QKI                   0.015   quaking homolog, KH domain RNA binding isoform HQK-5...
DBN1                  0.015   drebrin 1 isoform b 
DBN1                  0.015   drebrin 1 isoform a 
MPHOSPH8              0.015   M-phase phosphoprotein 8 
LOC731605             0.012   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.012   PREDICTED: similar to BCL2-associated transcription...
MAST4                 0.012   microtubule associated serine/threonine kinase fami...
PHF14                 0.012   PHD finger protein 14 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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