Guide to the Human Genome
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Name: LOC729973 Sequence: fasta or formatted (70aa) NCBI GI: 169162811
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {70aa} PREDICTED: hypothetical protein
alt mRNA {70aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4          8           2
 C cysteine            1.4          1           1
 D aspartate           2.9          2           1
 E glutamate          12.9          9           2
 F phenylalanine       1.4          1           1
 G glycine            11.4          8           2
 H histidine           1.4          1           1
 I isoleucine          1.4          1           1
 K lysine             27.1         19           3
 L leucine             4.3          3           1
 M methionine          2.9          2           1
 N asparagine          0.0          0           0
 P proline             7.1          5           2
 Q glutamine           8.6          6           1
 R arginine            0.0          0           0
 S serine              2.9          2           1
 T threonine           1.4          1           1
 V valine              1.4          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729973             1.000   PREDICTED: hypothetical protein 
LOC729973             1.000   PREDICTED: hypothetical protein 
CCDC72                0.824   coiled-coil domain containing 72 
LOC728416             0.647   PREDICTED: hypothetical protein 
LOC728416             0.647   PREDICTED: hypothetical protein 
LOC647188             0.412   PREDICTED: hypothetical protein 
LOC647188             0.412   PREDICTED: hypothetical protein 
LOC647188             0.412   PREDICTED: hypothetical protein 
LOC100131818          0.294   PREDICTED: hypothetical protein 
LOC100131818          0.294   PREDICTED: hypothetical protein 
PSIP1                 0.143   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.143   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.143   PC4 and SFRS1 interacting protein 1 isoform 2 
LOC100133698          0.084   PREDICTED: hypothetical protein 
PHIP                  0.084   pleckstrin homology domain interacting protein [Homo...
TNRC6B                0.084   trinucleotide repeat containing 6B isoform 3 
BSN                   0.076   bassoon protein 
LOC646993             0.076   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.076   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.076   PREDICTED: similar to high mobility group box 3 [Ho...
TAF3                  0.076   RNA polymerase II transcription factor TAFII140 [Ho...
FYB                   0.076   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.076   FYN binding protein (FYB-120/130) isoform 1 
ELL2                  0.076   elongation factor, RNA polymerase II, 2 
NCOR1                 0.067   nuclear receptor co-repressor 1 
AEBP1                 0.067   adipocyte enhancer binding protein 1 precursor [Homo...
SPAG17                0.067   sperm associated antigen 17 
TBC1D10B              0.067   TBC1 domain family, member 10B 
EIF5B                 0.067   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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