Guide to the Human Genome
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Name: LOC100291318 Sequence: fasta or formatted (156aa) NCBI GI: 239748853
Description:

PREDICTED: hypothetical protein XP_002346819

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         19           2
 C cysteine            3.8          6           1
 D aspartate           0.6          1           1
 E glutamate           3.2          5           2
 F phenylalanine       1.9          3           1
 G glycine             9.0         14           2
 H histidine           4.5          7           1
 I isoleucine          1.3          2           1
 K lysine              2.6          4           1
 L leucine             4.5          7           1
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline            14.7         23           3
 Q glutamine           3.8          6           1
 R arginine           13.5         21           3
 S serine             12.2         19           2
 T threonine           5.8          9           2
 V valine              3.8          6           2
 W tryptophan          1.3          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346819 
LOC100291555          1.000   PREDICTED: hypothetical protein XP_002345954 
LOC100287341          1.000   PREDICTED: hypothetical protein XP_002342638 
FAM83A                0.052   hypothetical protein LOC84985 isoform a 
SYNPO2L               0.046   synaptopodin 2-like isoform a 
SYNPO2L               0.046   synaptopodin 2-like isoform b 
LOC100127891          0.046   PREDICTED: similar to hCG2042508 
LOC100127891          0.046   PREDICTED: similar to hCG2042508 
LOC100127891          0.046   PREDICTED: similar to hCG2042508 
CELSR3                0.039   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
LOC100129697          0.039   PREDICTED: hypothetical protein 
FLJ37078              0.039   hypothetical protein LOC222183 
LOC100132426          0.036   PREDICTED: similar to hCG1742442 
ALPK3                 0.036   alpha-kinase 3 
STK11IP               0.036   LKB1 interacting protein 
LOC100293644          0.036   PREDICTED: hypothetical protein 
LOC100287563          0.036   PREDICTED: hypothetical protein 
LOC100287563          0.036   PREDICTED: hypothetical protein XP_002343733 
BAT2                  0.033   HLA-B associated transcript-2 
LOC100291908          0.033   PREDICTED: hypothetical protein XP_002345432 
FLJ39639              0.033   PREDICTED: hypothetical protein FLJ39639 
LOC731282             0.033   PREDICTED: hypothetical protein 
FLJ39639              0.033   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.033   PREDICTED: hypothetical protein LOC283876 
ZNF469                0.033   zinc finger protein 469 
CASKIN2               0.033   cask-interacting protein 2 isoform b 
CASKIN2               0.033   cask-interacting protein 2 isoform a 
LOC100131102          0.029   PREDICTED: hypothetical protein 
LOC729570             0.029   PREDICTED: hypothetical protein 
LOC645321             0.029   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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