Guide to the Human Genome
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Name: LOC100129697 Sequence: fasta or formatted (413aa) NCBI GI: 169210099
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {418aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         25           3
 C cysteine            4.4         18           1
 D aspartate           2.2          9           1
 E glutamate           3.1         13           1
 F phenylalanine       2.4         10           1
 G glycine            10.4         43           3
 H histidine           6.5         27           1
 I isoleucine          1.2          5           1
 K lysine              0.0          0           0
 L leucine             8.2         34           3
 M methionine          0.2          1           1
 N asparagine          0.0          0           0
 P proline            13.8         57           2
 Q glutamine           3.4         14           1
 R arginine           10.4         43           2
 S serine             11.4         47           2
 T threonine           6.1         25           1
 V valine              7.5         31           1
 W tryptophan          2.7         11           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129697          0.967   PREDICTED: hypothetical protein 
LOC100292124          0.019   PREDICTED: hypothetical protein XP_002346387 
LOC100291071          0.018   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.018   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.018   PREDICTED: hypothetical protein 
BBC3                  0.017   BCL2 binding component 3 isoform 1 
LOC100293818          0.016   PREDICTED: hypothetical protein 
LOC100291555          0.014   PREDICTED: hypothetical protein XP_002345954 
LOC100291318          0.014   PREDICTED: hypothetical protein XP_002346819 
LOC100287341          0.014   PREDICTED: hypothetical protein XP_002342638 
CELSR1                0.013   cadherin EGF LAG seven-pass G-type receptor 1 
VWCE                  0.013   von Willebrand factor C and EGF domains 
AGAP2                 0.011   centaurin, gamma 1 isoform PIKE-L 
LOC100290009          0.011   PREDICTED: hypothetical protein XP_002346608 
LOC100288104          0.011   PREDICTED: hypothetical protein XP_002342450 
CHRNA4                0.011   cholinergic receptor, nicotinic, alpha 4 subunit prec...
LOC100292566          0.010   PREDICTED: hypothetical protein 
LOC100291188          0.010   PREDICTED: hypothetical protein XP_002348260 
LOC100287511          0.010   PREDICTED: hypothetical protein XP_002342250 
AMMECR1L              0.010   AMME chromosomal region gene 1-like 
LOC100292184          0.010   PREDICTED: hypothetical protein 
LOC653052             0.010   PREDICTED: similar to homeodomain interacting prote...
UTF1                  0.010   undifferentiated embryonic cell transcription factor...
LOC100133636          0.009   PREDICTED: similar to hCG1806822 
SYNJ1                 0.009   synaptojanin 1 isoform d 
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, cal...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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