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Search of human proteins with 239748494
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748494 PREDICTED: hypothetical protein [Homo sapiens]
(459 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748494 PREDICTED: hypothetical protein [Homo sapiens] 935 0.0
gi|169167241 PREDICTED: hypothetical protein [Homo sapiens] 642 0.0
gi|169166404 PREDICTED: hypothetical protein [Homo sapiens] 591 e-169
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 39 0.010
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 39 0.010
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 39 0.010
gi|211059441 zinc finger protein 843 [Homo sapiens] 38 0.017
gi|145207994 hairy and enhancer of split 7 [Homo sapiens] 38 0.022
gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens] 36 0.064
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 36 0.064
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 35 0.11
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 35 0.14
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 35 0.19
gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ... 35 0.19
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 35 0.19
gi|46409306 family with sequence similarity 43, member B [Homo s... 34 0.24
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 34 0.32
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 34 0.32
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 34 0.32
gi|28416953 acyl-CoA synthetase short-chain family member 1 [Hom... 34 0.32
gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens] 33 0.41
gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens] 33 0.41
gi|148762978 similar to CG15216-PA [Homo sapiens] 33 0.41
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 33 0.54
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.71
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 33 0.71
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.71
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 33 0.71
>gi|239748494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 935 bits (2417), Expect = 0.0
Identities = 459/459 (100%), Positives = 459/459 (100%)
Query: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP
Sbjct: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
Query: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ 120
GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ
Sbjct: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ 120
Query: 121 TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT 180
TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT
Sbjct: 121 TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT 180
Query: 181 PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR 240
PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR
Sbjct: 181 PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR 240
Query: 241 GERGRARIIAENLEGVDGLQKSGYVKGRNYDFSFHEFFGNGTIANGFPMEQHEGIAPVPG 300
GERGRARIIAENLEGVDGLQKSGYVKGRNYDFSFHEFFGNGTIANGFPMEQHEGIAPVPG
Sbjct: 241 GERGRARIIAENLEGVDGLQKSGYVKGRNYDFSFHEFFGNGTIANGFPMEQHEGIAPVPG 300
Query: 301 CDCGRKKAFGRKSLKEDNFIFLVFMFLLMPTRTALPVAVKHGALLWQDKRLLKTKGCFTG 360
CDCGRKKAFGRKSLKEDNFIFLVFMFLLMPTRTALPVAVKHGALLWQDKRLLKTKGCFTG
Sbjct: 301 CDCGRKKAFGRKSLKEDNFIFLVFMFLLMPTRTALPVAVKHGALLWQDKRLLKTKGCFTG 360
Query: 361 AALRPATPSPSELARDSAPRPLGGARGAEIAVEDVACRFCGARLGTAVTEVTRKETARKG 420
AALRPATPSPSELARDSAPRPLGGARGAEIAVEDVACRFCGARLGTAVTEVTRKETARKG
Sbjct: 361 AALRPATPSPSELARDSAPRPLGGARGAEIAVEDVACRFCGARLGTAVTEVTRKETARKG 420
Query: 421 RGPAPPQPLAAWIGQSLLSPSDQGLHVAFTQGEFIKPSE 459
RGPAPPQPLAAWIGQSLLSPSDQGLHVAFTQGEFIKPSE
Sbjct: 421 RGPAPPQPLAAWIGQSLLSPSDQGLHVAFTQGEFIKPSE 459
>gi|169167241 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 642 bits (1655), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP
Sbjct: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
Query: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ 120
GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ
Sbjct: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ 120
Query: 121 TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT 180
TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT
Sbjct: 121 TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT 180
Query: 181 PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR 240
PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR
Sbjct: 181 PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR 240
Query: 241 GERGRARIIAENLEGVDGLQKSGYVKGRNYDFSFHEFFGNGTIANGFPMEQHEGIAPVPG 300
GERGRARIIAENLEGVDGLQKSGYVKGRNYDFSFHEFFGNGTIANGFPMEQHEGIAPVPG
Sbjct: 241 GERGRARIIAENLEGVDGLQKSGYVKGRNYDFSFHEFFGNGTIANGFPMEQHEGIAPVPG 300
Query: 301 CDCGRKKAFGRK 312
CDCGRKKAFGRK
Sbjct: 301 CDCGRKKAFGRK 312
>gi|169166404 PREDICTED: hypothetical protein [Homo sapiens]
Length = 327
Score = 591 bits (1524), Expect = e-169
Identities = 296/320 (92%), Positives = 298/320 (93%), Gaps = 8/320 (2%)
Query: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP
Sbjct: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
Query: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ 120
GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ
Sbjct: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ 120
Query: 121 TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT 180
TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT
Sbjct: 121 TTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGT 180
Query: 181 PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR 240
PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR
Sbjct: 181 PGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR 240
Query: 241 GERGRARIIAENLEGVDGLQKSGYVKGRNYDFS-FHEFFGNGT-------IANGFPMEQH 292
GERGRARIIAENLEGVDGLQKSGY+KG S F G A+GFPMEQH
Sbjct: 241 GERGRARIIAENLEGVDGLQKSGYLKGGEITISPFMNSLARGPWQRQAGFSADGFPMEQH 300
Query: 293 EGIAPVPGCDCGRKKAFGRK 312
EGIAPVPGCDCG KKAFGRK
Sbjct: 301 EGIAPVPGCDCGSKKAFGRK 320
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 38.9 bits (89), Expect = 0.010
Identities = 55/185 (29%), Positives = 72/185 (38%), Gaps = 32/185 (17%)
Query: 2 SAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPA--------VAPVFVSLAV 53
SAPRR L P P +P + + P +PG + PA + V V +AV
Sbjct: 85 SAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAV 144
Query: 54 AAQR-LHPGC-----HPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPA 107
++R H G PR AQ RH P R + R++ R L LRPA
Sbjct: 145 QSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRS----RPRL-LRPASP 199
Query: 108 ALQITPLRRPKDQTTAPR-AAEPPTSAHRRLLPFYNLAAAARPRV--------LPARAGA 158
P P+ ++TAPR P R P A AR + L R GA
Sbjct: 200 ----PPRPAPRRRSTAPRHEGGRPGRGRTRRQPHLAGAGCARLELEGARMGERLHRRQGA 255
Query: 159 PKTLC 163
P+T C
Sbjct: 256 PETAC 260
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 38.9 bits (89), Expect = 0.010
Identities = 41/127 (32%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 14 GQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRH 73
G P R+ A P PP P G ++ + P L PG
Sbjct: 58 GSPLYRVSAPPPAPPPPPPPGGPSRSERPRAG------------LRPGAFVSP------- 98
Query: 74 LLRHVGPAGREHSCTGRQAGLAGR-----AALSL--RPAPAALQITPLRRPKDQTTAPRA 126
GP GR SC+GR AG AGR AALS R PA Q+ P R T +P
Sbjct: 99 -----GPLGRRASCSGR-AGSAGRLRCSAAALSAAQRGGPARAQVPPALR----TFSPGP 148
Query: 127 AEPPTSA 133
A PP ++
Sbjct: 149 ASPPRAS 155
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 38.9 bits (89), Expect = 0.010
Identities = 41/127 (32%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 14 GQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRH 73
G P R+ A P PP P G ++ + P L PG
Sbjct: 58 GSPLYRVSAPPPAPPPPPPPGGPSRSERPRAG------------LRPGAFVSP------- 98
Query: 74 LLRHVGPAGREHSCTGRQAGLAGR-----AALSL--RPAPAALQITPLRRPKDQTTAPRA 126
GP GR SC+GR AG AGR AALS R PA Q+ P R T +P
Sbjct: 99 -----GPLGRRASCSGR-AGSAGRLRCSAAALSAAQRGGPARAQVPPALR----TFSPGP 148
Query: 127 AEPPTSA 133
A PP ++
Sbjct: 149 ASPPRAS 155
>gi|211059441 zinc finger protein 843 [Homo sapiens]
Length = 348
Score = 38.1 bits (87), Expect = 0.017
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 80 PAGREHSCTGRQAGLAGRAALSL---RPAPAALQITPLRRPKDQTTAPRAAEPPTSAHRR 136
P GR HS G + G +G+ L AL+++P+ P A PP ++HRR
Sbjct: 84 PLGRSHSSAGVRQGFSGQLCCWLTKEHTLAEALRLSPV--PAGFWGPVEADRPPANSHRR 141
Query: 137 LLPF--------YNLAAAARPRVLPARAGAPKTLCGAGAAATLRPRE-ATEGTPGVRWAG 187
+ PF N + RVLP G G+ + +L P A + T G+R G
Sbjct: 142 VCPFCCCSCGDSVNEKTSLSQRVLP-HPGEKTCRGGSVESVSLAPSSVAPDSTSGLRPCG 200
Query: 188 -----VGRLPP 193
+ LPP
Sbjct: 201 SPGSFLQHLPP 211
>gi|145207994 hairy and enhancer of split 7 [Homo sapiens]
Length = 225
Score = 37.7 bits (86), Expect = 0.022
Identities = 42/121 (34%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 22 ALHNF--PSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRHLLRHVG 79
ALH + P PPRP P + PA P SL AA L P H R H G
Sbjct: 121 ALHGYLRPKPPRPKP--VDPRPPAPRP---SLDPAAPALGPALHQRPPV--------HQG 167
Query: 80 -PAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEPPTSAHRRLL 138
P+ R C + + RA S PAP + P P Q AP+A PP A R
Sbjct: 168 HPSPR---CAWSPSLCSPRAGDSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPW 224
Query: 139 P 139
P
Sbjct: 225 P 225
>gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 319
Score = 36.2 bits (82), Expect = 0.064
Identities = 71/246 (28%), Positives = 91/246 (36%), Gaps = 31/246 (12%)
Query: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
+S L+P RG +IP + S P P G AK K ++ +L A + P
Sbjct: 79 VSCGEEKPLVPRRGASSPQIPLNISGSSEPPPQKGDAKLKGVRMS----TLQTAETKPTP 134
Query: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGL-AGRAALSLRP-----APAALQITP- 113
C PR + LR H P R+ S A L A R S P AP + P
Sbjct: 135 TC-PRRQRRWLR-TTPHPPPPTRQGSREMAGAFLVAPRPPYSRSPGGPESAPTPASVLPE 192
Query: 114 LRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLP--ARAGAPKTLCGAGAAATL 171
LRR K + + P P A RP +P +RA AP T G
Sbjct: 193 LRRGKQDLLSADSGLPAVDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGT------ 246
Query: 172 RPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPR 231
R R+ G +R A PH GG A +++A PR P A A L
Sbjct: 247 RARDPAPGASQLRAAH----SPHRGG---GGAPRTQLAAPPR---PPLPQENAAAGLASC 296
Query: 232 RVSCGA 237
SC A
Sbjct: 297 SASCAA 302
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 36.2 bits (82), Expect = 0.064
Identities = 49/175 (28%), Positives = 62/175 (35%), Gaps = 13/175 (7%)
Query: 71 LRHLLRHVGP-AGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEP 129
L ++ R+ GP A G +AG GRA L + + +R QT A + EP
Sbjct: 3 LFYVARYPGPDAAAAAGPEGAEAGAHGRARALLERLQSRARERQQQREPAQTEAAASTEP 62
Query: 130 PTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRP--REATEGTPGVRWAG 187
T RR R RV A G+P+ G A E+ E PG AG
Sbjct: 63 ATRRRRR--------PRRRRRVNDAEPGSPEAPQGKRRKADGEDAGAESNEEAPGEPSAG 114
Query: 188 VGRLPPHE--GGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSR 240
P E G E + SA A A L+P V G G R
Sbjct: 115 SSEEAPGEPSAGSSEEAPGERSTSASAEAAPDGPALEEAAGPLVPGLVLGGFGKR 169
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 35.4 bits (80), Expect = 0.11
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 79 GPAGREHSCTGRQAGL---AGRAALS----LRPAPAALQITPLRRPKDQTTAPRAAE--- 128
G G +H GR+A AG A L+ +R AP+ L+ L+R + A
Sbjct: 87 GGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK 146
Query: 129 --PPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWA 186
P + R LP + ARP V P+ A + G GA RP P WA
Sbjct: 147 PGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGA----RPVPGGPAGPRESWA 202
Query: 187 GVGRLPP 193
PP
Sbjct: 203 RRTSSPP 209
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 35.4 bits (80), Expect = 0.11
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 79 GPAGREHSCTGRQAGL---AGRAALS----LRPAPAALQITPLRRPKDQTTAPRAAE--- 128
G G +H GR+A AG A L+ +R AP+ L+ L+R + A
Sbjct: 90 GGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK 149
Query: 129 --PPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWA 186
P + R LP + ARP V P+ A + G GA RP P WA
Sbjct: 150 PGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGA----RPVPGGPAGPRESWA 205
Query: 187 GVGRLPP 193
PP
Sbjct: 206 RRTSSPP 212
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 35.4 bits (80), Expect = 0.11
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 79 GPAGREHSCTGRQAGL---AGRAALS----LRPAPAALQITPLRRPKDQTTAPRAAE--- 128
G G +H GR+A AG A L+ +R AP+ L+ L+R + A
Sbjct: 90 GGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK 149
Query: 129 --PPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWA 186
P + R LP + ARP V P+ A + G GA RP P WA
Sbjct: 150 PGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGA----RPVPGGPAGPRESWA 205
Query: 187 GVGRLPP 193
PP
Sbjct: 206 RRTSSPP 212
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 35.0 bits (79), Expect = 0.14
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 16 PGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRHLL 75
PG ++P P P RP P +PA P + + R PGC PR R L
Sbjct: 40 PGGQLPGARRGPGPRRPAP------LPARPPGALGSVLRPLRARPGCRPRRPHPAARCLP 93
Query: 76 RHVGPAGREHSCTGRQAGLAGRAALSLRPAP 106
R H G G + RPAP
Sbjct: 94 LRPHRPTRRHRRPGGFPLAWGSPQPAPRPAP 124
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 34.7 bits (78), Expect = 0.19
Identities = 40/137 (29%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 106 PAALQITPLRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGA 165
P+AL RP AP A PP + P AAA P A +P A
Sbjct: 87 PSALTRAVAWRP---AAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPA 143
Query: 166 GAAATLRPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRA- 224
A +RP A G P A V P L ++A P A P V P A
Sbjct: 144 AVPAAVRPPAA--GPPAAALAAV--YPAAADPSAASLCAASPLAAVPAAASPAAVAPAAV 199
Query: 225 -PAVLLPRRVSCGAGSR 240
P P S A S+
Sbjct: 200 CPGAAGPSAASLCAASQ 216
>gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo
sapiens]
Length = 252
Score = 34.7 bits (78), Expect = 0.19
Identities = 39/117 (33%), Positives = 44/117 (37%), Gaps = 27/117 (23%)
Query: 90 RQAGLAGRAALSLRPAPA---ALQITPLRRPKDQTTA--PRAAEPPTSAHRRLLPFYNLA 144
R+AG AG A PAP AL PL + T A PRA P +A +R L L
Sbjct: 129 REAGAAGAARAPKPPAPGSGQALPADPLLQAAASTLAGRPRAPPPAPAAGQRGLGSGALG 188
Query: 145 ------AAARPRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWAGVGRLPPHE 195
AARP P RA P +G G R G GR P E
Sbjct: 189 LGRREKLAARPAATPRRASRP----------------PWQGCRGARGLGGGRGPLRE 229
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 34.7 bits (78), Expect = 0.19
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 92 AGLAGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAARPRV 151
A L R+A +PA+ + P+R +T+ A P + H +L+ A R +V
Sbjct: 639 ATLLARSAWRSAGSPAS-PLVPVRAGPWASTSRLPAPPARTLHA------SLSRAGRSQV 691
Query: 152 L---PARAGAPKTLCGAG----AAATLRPREAT-EGTPGVRWAGVGRLPPHEGGLQVELA 203
P G + L G A+ P+ AT +G+PG + +G RLPP GL LA
Sbjct: 692 SLLGPPPGGGGRRLGPRGRPLSASQPSLPQRATGDGSPGRKGSGSERLPP--SGL---LA 746
Query: 204 WDDRVSAEPRAFCPRFVTPR 223
R + PR P TPR
Sbjct: 747 KPPRTAQPPRPPVPEPATPR 766
>gi|46409306 family with sequence similarity 43, member B [Homo
sapiens]
Length = 329
Score = 34.3 bits (77), Expect = 0.24
Identities = 57/198 (28%), Positives = 69/198 (34%), Gaps = 32/198 (16%)
Query: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQ 120
G HPRV A V RH RH R H+ +A A RA L A + +R + Q
Sbjct: 153 GRHPRVFAWVYRHQARHKAVVLRCHAVLLARAHKA-RALARLLRQTALAAFSDFKRLQRQ 211
Query: 121 TTAPR-----------AAEPPTSAHRRLLPFYNLAAAARPRVLPARAGAPKTLCGAGAAA 169
+ A AA P + RRLL N A RP GAP+
Sbjct: 212 SDARHVRQQHLRAGGAAASVPRAPLRRLL---NAKCAYRPPPSERSRGAPRLSSIQEEDE 268
Query: 170 TLRPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLL 229
+A E GV P E + LA + R C P P
Sbjct: 269 EEEEDDAEEQEGGV--------PQRERPEVLSLARELRT-------CSLRGAPAPPPPAQ 313
Query: 230 PRRVSCGAGSRGERGRAR 247
PRR AG R G+AR
Sbjct: 314 PRRWK--AGPRERAGQAR 329
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 33.9 bits (76), Expect = 0.32
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 149 PRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWA-GVGRLPPHEGGLQVELAWDDR 207
P + AGA L A A ++L + + PG W G + P GG + + R
Sbjct: 3 PACVGGDAGA---LSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAP-AGGSPLAVGGAFR 58
Query: 208 VSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSRGERGRAR 247
VS+ PR F PR P P+ R CGA G RGR R
Sbjct: 59 VSS-PRPFPPR---PERPS--RRHRAGCGAHGPGSRGRER 92
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 33.9 bits (76), Expect = 0.32
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 149 PRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWA-GVGRLPPHEGGLQVELAWDDR 207
P + AGA L A A ++L + + PG W G + P GG + + R
Sbjct: 3 PACVGGDAGA---LSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAP-AGGSPLAVGGAFR 58
Query: 208 VSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSRGERGRAR 247
VS+ PR F PR P P+ R CGA G RGR R
Sbjct: 59 VSS-PRPFPPR---PERPS--RRHRAGCGAHGPGSRGRER 92
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 33.9 bits (76), Expect = 0.32
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 149 PRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWA-GVGRLPPHEGGLQVELAWDDR 207
P + AGA L A A ++L + + PG W G + P GG + + R
Sbjct: 3 PACVGGDAGA---LSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAP-AGGSPLAVGGAFR 58
Query: 208 VSAEPRAFCPRFVTPRAPAVLLPRRVSCGAGSRGERGRAR 247
VS+ PR F PR P P+ R CGA G RGR R
Sbjct: 59 VSS-PRPFPPR---PERPS--RRHRAGCGAHGPGSRGRER 92
>gi|28416953 acyl-CoA synthetase short-chain family member 1 [Homo
sapiens]
Length = 689
Score = 33.9 bits (76), Expect = 0.32
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 17 GRRIPALHNFPSPP-RPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRHLL 75
GR + +L P RP GV+ + A P + AVAA PG +P + AQ R
Sbjct: 11 GRLLGSLRGLSGQPARPPCGVSAPRRAASGPSGSAPAVAAAAAQPGSYPALSAQAAREPA 70
Query: 76 RHVGPAGRE 84
GP R+
Sbjct: 71 AFWGPLARD 79
>gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 33.5 bits (75), Expect = 0.41
Identities = 69/246 (28%), Positives = 89/246 (36%), Gaps = 30/246 (12%)
Query: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
+S L+P RG +IP + S P P G AK K ++ +L A +
Sbjct: 79 VSCGEEKPLVPRRGASSPQIPLNISGSSEPPPQKGDAKLKGVRMS----TLQTAETKPRT 134
Query: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGL-AGRAALSLRP-----APAALQITP- 113
PR + LR H P R+ S A L A R S P AP + P
Sbjct: 135 PTCPRRQRRWLR-TTPHPPPPTRQGSREMAGAFLVAPRPPYSRSPGGPESAPTPASVLPE 193
Query: 114 LRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLP--ARAGAPKTLCGAGAAATL 171
LRR K + + P P A RP +P +RA AP T G
Sbjct: 194 LRRGKQDLLSADSGLPAVDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGT------ 247
Query: 172 RPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPR 231
R R+ G +R A PH GG A +++A PR P A A L
Sbjct: 248 RARDPAPGASQLRAAH----SPHRGG---GGAPRTQLAAPPR---PPLPQENAAAGLASC 297
Query: 232 RVSCGA 237
SC A
Sbjct: 298 SASCAA 303
>gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 33.5 bits (75), Expect = 0.41
Identities = 69/246 (28%), Positives = 89/246 (36%), Gaps = 30/246 (12%)
Query: 1 MSAPRRDALLPLRGQPGRRIPALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHP 60
+S L+P RG +IP + S P P G AK K ++ +L A +
Sbjct: 79 VSCGEEKPLVPRRGASSPQIPLNISGSSEPPPQKGDAKLKGVRMS----TLQTAETKPRT 134
Query: 61 GCHPRVLAQVLRHLLRHVGPAGREHSCTGRQAGL-AGRAALSLRP-----APAALQITP- 113
PR + LR H P R+ S A L A R S P AP + P
Sbjct: 135 PTCPRRQRRWLR-TTPHPPPPTRQGSREMAGAFLVAPRPPYSRSPGGPESAPTPASVLPE 193
Query: 114 LRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLP--ARAGAPKTLCGAGAAATL 171
LRR K + + P P A RP +P +RA AP T G
Sbjct: 194 LRRGKQDLLSADSGLPAVDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGT------ 247
Query: 172 RPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDRVSAEPRAFCPRFVTPRAPAVLLPR 231
R R+ G +R A PH GG A +++A PR P A A L
Sbjct: 248 RARDPAPGASQLRAAH----SPHRGG---GGAPRTQLAAPPR---PPLPQENAAAGLASC 297
Query: 232 RVSCGA 237
SC A
Sbjct: 298 SASCAA 303
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 33.5 bits (75), Expect = 0.41
Identities = 51/209 (24%), Positives = 68/209 (32%), Gaps = 32/209 (15%)
Query: 21 PALHNFPSPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRHLLRHVGP 80
PA+ P PP P V + + P + + +A R PG P + + L R
Sbjct: 62 PAMETLPEPPPPESAVPRARTREAEPRRRARSKSAPRAPPGLTPAPASPPV--LPRR--- 116
Query: 81 AGREHSCTGRQAGLAGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEPPTSAHRRLLPF 140
GR+A A RA S R PA P R P +P R+ P
Sbjct: 117 --------GREAQRAARAEASPRREPA----YPALRALANELHPIKLQPQRGGPGRVAPL 164
Query: 141 YNLAAAARPRVLPARAGAPKTLC-------------GAGAAATLRPREATE-GTPGVRWA 186
A P PA AP C + + P EA P ++
Sbjct: 165 CAAAGRCAPPEPPA-GPAPHVRCRLDIKPDDAVLQHATRGSRSCGPTEAAHWARPAPQFH 223
Query: 187 GVGRLPPHEGGLQVELAWDDRVSAEPRAF 215
G+ P L D A+PRAF
Sbjct: 224 GLTVPGPRHMALSRTPTPSDSYCADPRAF 252
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 33.1 bits (74), Expect = 0.54
Identities = 39/114 (34%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 98 AALSLRPAPAALQITPLRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAARPRVLPARAG 157
AAL+L APA L P P P + P LL LAA PA G
Sbjct: 7 AALALAAAPAPLPQPPPPPPPPPPPLPPPSGGPELEGDGLLLRERLAALGLDDPSPAEPG 66
Query: 158 APKTLCGAGAAATLRPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDRVSAE 211
AP L AAA + R A E +P R A GR P ++EL D+ E
Sbjct: 67 AP-ALRAPAAAAQGQARRAAELSPEER-APPGR-PGAPEAAELELEEDEEEGEE 117
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.7 bits (73), Expect = 0.71
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 26/131 (19%)
Query: 82 GREHSCTGRQAGL------AGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEP-PTSAH 134
GR + GR G AG +A + P P TP P+ + P+ P P
Sbjct: 82 GRAKTTRGRSQGAGATETSAGNSAATAAPHP-----TPASYPQGTISPPQLPAPRPKRFG 136
Query: 135 RRLLPFYNL-------AAAARPRV------LPARAGAPKTLCGAGAAATLRPREATEGTP 181
+ P + + A PRV P R P T C GA A REA
Sbjct: 137 GKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQ 196
Query: 182 GVRWAGVGRLP 192
G+R A RLP
Sbjct: 197 GLR-APAARLP 206
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 32.7 bits (73), Expect = 0.71
Identities = 67/215 (31%), Positives = 81/215 (37%), Gaps = 50/215 (23%)
Query: 28 SPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRHLLRHVGPAGREHSC 87
SPPRP G A+ ++ A + + A AQR+ G +LR +GPA R
Sbjct: 80 SPPRP--GSARTQLVATSAAQAAAAGRAQRVRRG--------LLRWRTTALGPA-RPRLR 128
Query: 88 TGRQAGLAGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAA 147
R G L PAP PRA P R L AA+
Sbjct: 129 RPRHRLPGGSRRL---PAP----------------GPRAPAPGKGREREL----RTGAAS 165
Query: 148 RPRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDR 207
R PAR G P+ L A A+T RPR G P V PP GGL +
Sbjct: 166 IDRA-PARTG-PEDL--AARASTRRPRGFRPGLP------VPTAPP--GGLAAAAKDETS 213
Query: 208 VSAEPRAFCPRFVTPRAPAVLLPRRV-SCGAGSRG 241
+A R PR A V R V SCGA + G
Sbjct: 214 CAARERGASPR---GDAGRVGRTRAVPSCGAPAVG 245
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.7 bits (73), Expect = 0.71
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 26/131 (19%)
Query: 82 GREHSCTGRQAGL------AGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEP-PTSAH 134
GR + GR G AG +A + P P TP P+ + P+ P P
Sbjct: 82 GRAKTTRGRSQGAGATETSAGNSAATAAPHP-----TPASYPQGTISPPQLPAPRPKRFG 136
Query: 135 RRLLPFYNL-------AAAARPRV------LPARAGAPKTLCGAGAAATLRPREATEGTP 181
+ P + + A PRV P R P T C GA A REA
Sbjct: 137 GKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQ 196
Query: 182 GVRWAGVGRLP 192
G+R A RLP
Sbjct: 197 GLR-APAARLP 206
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 32.7 bits (73), Expect = 0.71
Identities = 67/215 (31%), Positives = 81/215 (37%), Gaps = 50/215 (23%)
Query: 28 SPPRPVPGVAKQKIPAVAPVFVSLAVAAQRLHPGCHPRVLAQVLRHLLRHVGPAGREHSC 87
SPPRP G A+ ++ A + + A AQR+ G +LR +GPA R
Sbjct: 80 SPPRP--GSARTQLVATSAAQAAAAGRAQRVRRG--------LLRWRTTALGPA-RPRLR 128
Query: 88 TGRQAGLAGRAALSLRPAPAALQITPLRRPKDQTTAPRAAEPPTSAHRRLLPFYNLAAAA 147
R G L PAP PRA P R L AA+
Sbjct: 129 RPRHRLPGGSRRL---PAP----------------GPRAPAPGKGREREL----RTGAAS 165
Query: 148 RPRVLPARAGAPKTLCGAGAAATLRPREATEGTPGVRWAGVGRLPPHEGGLQVELAWDDR 207
R PAR G P+ L A A+T RPR G P V PP GGL +
Sbjct: 166 IDRA-PARTG-PEDL--AARASTRRPRGFRPGLP------VPTAPP--GGLAAAAKDETS 213
Query: 208 VSAEPRAFCPRFVTPRAPAVLLPRRV-SCGAGSRG 241
+A R PR A V R V SCGA + G
Sbjct: 214 CAARERGASPR---GDAGRVGRTRAVPSCGAPAVG 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,566,870
Number of Sequences: 37866
Number of extensions: 1195773
Number of successful extensions: 4968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 4834
Number of HSP's gapped (non-prelim): 283
length of query: 459
length of database: 18,247,518
effective HSP length: 106
effective length of query: 353
effective length of database: 14,233,722
effective search space: 5024503866
effective search space used: 5024503866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.