Guide to the Human Genome
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Name: LOC100131811 Sequence: fasta or formatted (319aa) NCBI GI: 169167241
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {327aa} PREDICTED: hypothetical protein
alt prot {459aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         46           4
 C cysteine            2.5          8           1
 D aspartate           2.2          7           2
 E glutamate           4.1         13           1
 F phenylalanine       3.4         11           2
 G glycine            10.7         34           2
 H histidine           3.1         10           1
 I isoleucine          2.2          7           2
 K lysine              2.8          9           2
 L leucine             9.1         29           2
 M methionine          0.9          3           1
 N asparagine          1.9          6           1
 P proline            11.6         37           2
 Q glutamine           3.1         10           1
 R arginine           12.5         40           2
 S serine              3.4         11           1
 T threonine           3.4         11           2
 V valine              6.6         21           1
 W tryptophan          0.9          3           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131811          0.973   PREDICTED: hypothetical protein 
LOC100131811          0.920   PREDICTED: hypothetical protein 
LOC100293818          0.022   PREDICTED: hypothetical protein 
LOC645321             0.022   PREDICTED: hypothetical protein 
LOC645321             0.022   PREDICTED: hypothetical protein 
ZNF843                0.021   zinc finger protein 843 
HES7                  0.021   hairy and enhancer of split 7 
LOC401180             0.017   PREDICTED: similar to hCG1745223 
DDX51                 0.017   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
LOC100293776          0.016   PREDICTED: hypothetical protein 
LOC100288658          0.016   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.016   PREDICTED: hypothetical protein 
BBC3                  0.016   BCL2 binding component 3 isoform 1 
KRTAP4-6              0.016   PREDICTED: keratin associated protein 4.6 
LOC100289126          0.016   PREDICTED: hypothetical protein XP_002343381 
HCN3                  0.016   hyperpolarization activated cyclic nucleotide-gated ...
FAM43B                0.014   family with sequence similarity 43, member B 
LOC100292172          0.014   PREDICTED: hypothetical protein 
LOC100289763          0.014   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.014   PREDICTED: hypothetical protein XP_002343623 
ACSS1                 0.014   acyl-CoA synthetase short-chain family member 1 [Hom...
LOC401180             0.013   PREDICTED: similar to hCG1745223 
LOC401180             0.013   PREDICTED: similar to hCG1745223 
LOC389813             0.013   similar to CG15216-PA 
MEX3C                 0.013   ring finger and KH domain containing 2 
LOC100129571          0.013   PREDICTED: similar to hCG1646049 
LOC100292234          0.013   PREDICTED: hypothetical protein 
LOC100129571          0.013   PREDICTED: similar to hCG1646049 
LOC100290708          0.013   PREDICTED: hypothetical protein XP_002346660 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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