Guide to the Human Genome
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Name: ACSS1 Sequence: fasta or formatted (689aa) NCBI GI: 28416953
Description:

acyl-CoA synthetase short-chain family member 1

Referenced in:

Amino Acid Catabolism
Fatty Acid Synthesis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         74           5
 C cysteine            2.2         15           1
 D aspartate           5.4         37           2
 E glutamate           5.5         38           2
 F phenylalanine       2.6         18           2
 G glycine             9.3         64           2
 H histidine           2.6         18           1
 I isoleucine          5.2         36           2
 K lysine              4.5         31           2
 L leucine             7.5         52           3
 M methionine          2.3         16           1
 N asparagine          1.7         12           1
 P proline             5.7         39           2
 Q glutamine           2.8         19           1
 R arginine            6.0         41           2
 S serine              5.8         40           2
 T threonine           5.7         39           3
 V valine              9.0         62           3
 W tryptophan          1.9         13           2
 Y tyrosine            3.6         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   acyl-CoA synthetase short-chain family member 1 [Hom... 
ACSS2                 0.427   acyl-CoA synthetase short-chain family member 2 isofo...
ACSS2                 0.423   acyl-CoA synthetase short-chain family member 2 iso...
ACSS3                 0.251   acyl-CoA synthetase short-chain family member 3 [Hom...
ACSM4                 0.118   acyl-CoA synthetase medium-chain family member 4 [H...
ACSM1                 0.110   acyl-CoA synthetase medium-chain family member 1 [H...
ACSM3                 0.108   SA hypertension-associated homolog isoform 1 
AACS                  0.107   acetoacetyl-CoA synthetase 
ACSM5                 0.104   acyl-CoA synthetase medium-chain family member 5 [Ho...
ACSM2A                0.099   acyl-CoA synthetase medium-chain family member 2A [H...
LOC100291873          0.094   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
LOC100291873          0.094   PREDICTED: similar to Acyl-coenzyme A synthetase AC...
ACSM2B                0.091   acyl-CoA synthetase medium-chain family member 2B [...
ACSM2B                0.091   acyl-CoA synthetase medium-chain family member 2B [...
ACSF2                 0.072   acyl-CoA synthetase family member 2 
ACSF3                 0.053   acyl-CoA synthetase family member 3 
ACSF3                 0.053   acyl-CoA synthetase family member 3 
C10orf129             0.048   acyl-coenzyme A synthetase ACSM6, mitochondrial [Ho...
ACSM3                 0.046   SA hypertension-associated homolog isoform 2 
SLC27A1               0.038   solute carrier family 27, member 1 
SLC27A4               0.032   solute carrier family 27 (fatty acid transporter), m...
SLC27A6               0.032   solute carrier family 27 (fatty acid transporter), m...
SLC27A6               0.032   solute carrier family 27 (fatty acid transporter), m...
SLC27A3               0.017   solute carrier family 27 member 3 
SLC27A5               0.015   solute carrier family 27 (fatty acid transporter), m...
AASDH                 0.014   aminoadipate-semialdehyde dehydrogenase 
SLC27A2               0.013   solute carrier family 27 (fatty acid transporter), ...
ACSL4                 0.011   acyl-CoA synthetase long-chain family member 4 isofor...
ACSL4                 0.011   acyl-CoA synthetase long-chain family member 4 isofo...
ARX                   0.009   aristaless related homeobox 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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