Guide to the Human Genome
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Search of human proteins with 239748402

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748402 PREDICTED: hypothetical protein [Homo sapiens]
         (67 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]           147   2e-36
gi|239748402 PREDICTED: hypothetical protein [Homo sapiens]           147   2e-36
gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo ...   147   2e-36
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    42   1e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    42   1e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ...    42   1e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     42   1e-04
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     41   2e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    38   0.002
gi|11056048 doublesex and mab-3 related transcription factor 3 [...    38   0.002
gi|134142824 forkhead box D2 [Homo sapiens]                            38   0.002
gi|115430223 galectin 3 [Homo sapiens]                                 37   0.003
gi|46852172 kinesin family member 13B [Homo sapiens]                   37   0.003
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         37   0.004
gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yea...    37   0.004
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          37   0.004
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]                     36   0.006
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]                     36   0.006
gi|4503519 eukaryotic translation initiation factor 3, subunit 5...    36   0.008
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      35   0.010
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]            35   0.010
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]                    35   0.010
gi|106507239 EGFR-coamplified and overexpressed protein [Homo sa...    35   0.013
gi|237757310 synaptojanin 1 isoform a [Homo sapiens]                   35   0.013
gi|237757308 synaptojanin 1 isoform b [Homo sapiens]                   35   0.013
gi|169162161 PREDICTED: similar to EGFR-coamplified and overexpr...    35   0.013
gi|113411383 PREDICTED: similar to EGFR-coamplified and overexpr...    35   0.013
gi|33356148 formin-like 1 [Homo sapiens]                               35   0.013
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi...    35   0.017
gi|10863877 phospholipid scramblase 1 [Homo sapiens]                   35   0.017

>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score =  147 bits (371), Expect = 2e-36
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1   MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
           MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250

Query: 61  TENAPAS 67
           TENAPAS
Sbjct: 251 TENAPAS 257



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 7   PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61
           P  G P  +P   A   PPA A+  A      AG P  A  RG  AA      PGT
Sbjct: 69  PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124


>gi|239748402 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 67

 Score =  147 bits (371), Expect = 2e-36
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
          MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1  MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60

Query: 61 TENAPAS 67
          TENAPAS
Sbjct: 61 TENAPAS 67


>gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo
          sapiens]
          Length = 67

 Score =  147 bits (371), Expect = 2e-36
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
          MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1  MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60

Query: 61 TENAPAS 67
          TENAPAS
Sbjct: 61 TENAPAS 67


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 30/61 (49%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 6   APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 65
           AP P AP   PV   VAAP A A     P PA A APA A    VAAP P   P    AP
Sbjct: 144 APAP-APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPA---PVAAPAPAPAPAPAPAP 199

Query: 66  A 66
           A
Sbjct: 200 A 200



 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
           P P      AP   PV  AV AP  A A    P PA   APA A      AP P   P  
Sbjct: 147 PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA-PAPAPAPAPAPAPAP 205

Query: 62  ENAP 65
           + AP
Sbjct: 206 DAAP 209


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 30/61 (49%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 6   APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 65
           AP P AP   PV   VAAP A A     P PA A APA A    VAAP P   P    AP
Sbjct: 144 APAP-APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPA---PVAAPAPAPAPAPAPAP 199

Query: 66  A 66
           A
Sbjct: 200 A 200



 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
           P P      AP   PV  AV AP  A A    P PA   APA A      AP P   P  
Sbjct: 147 PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA-PAPAPAPAPAPAPAP 205

Query: 62  ENAP 65
           + AP
Sbjct: 206 DAAP 209


>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
           sapiens]
          Length = 316

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 30/61 (49%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 6   APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 65
           AP P AP   PV   VAAP A A     P PA A APA A    VAAP P   P    AP
Sbjct: 155 APAP-APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPA---PVAAPAPAPAPAPAPAP 210

Query: 66  A 66
           A
Sbjct: 211 A 211



 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
           P P      AP   PV  AV AP  A A    P PA   APA A      AP P   P  
Sbjct: 158 PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA-PAPAPAPAPAPAPAP 216

Query: 62  ENAP 65
           + AP
Sbjct: 217 DAAP 220


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 26/57 (45%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 4   PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
           P AP P AP   P   A AAPP   A   PP P  A APA A R   AA     +PG
Sbjct: 108 PPAP-PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG 163



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 2   PGPGAPRPGAPGTWPVGF---AVAAPPAAAASVAP---PPPAVA 39
           PGP  P P A    P+     A AAPPA A    P   PPPAVA
Sbjct: 162 PGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVA 205



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 24  PPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 67
           PP   A+   PP A  GAPAAA     AAP P   P    AP +
Sbjct: 101 PPRRGATPPAPPRAPRGAPAAAA---AAAPPPTPAPPPPPAPVA 141



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPP-----AAAASVAPPPPAVA-GAPAAAFRGWVAAPDP 55
           P P  P P AP       A AAP      AAAA+ APP P  A   P A     +AAP P
Sbjct: 129 PTPAPPPPPAP------VAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPP 182



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAP-PAAAASVAPPP-PAVAGAPAAAFRGWVAAPDP 55
           P PG  +PG         A   P PAA  +VAPP  P  A  PA A R     P P
Sbjct: 160 PSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPP 215



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 4   PGAPRPGAPGTWPVGFA-VAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 59
           P +P P  PG      A +AAPP A A  APP  A    P  A    VAA +P   P
Sbjct: 159 PPSPGPAQPGPRAQRAAPLAAPPPAPA--APPAVAPPAGPRRAPPPAVAAREPPLPP 213



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 59
           P P AP   AP   P      APP A A+  PP P     PA   +     P P   P
Sbjct: 182 PAPAAPPAVAPPAGPR----RAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPP 235


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 27/56 (48%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 4   PGAPRPGAPGTWP-VGFAVAAPPAAAASVAPPPPAVAGAPAAA---FRGWVAAPDP 55
           PGA  PG PG  P  G A AA  AAAA+ A    A AG  AAA    +GW   P P
Sbjct: 224 PGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGP 279



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPP----------AAAASVAPPPPAVAGAPAAAFRGWVA 51
           P  GA   G  G  P G   AA P           AAA+ A    A A A AAA  G  A
Sbjct: 206 PSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAA 265

Query: 52  APDPG 56
           A  PG
Sbjct: 266 AGGPG 270


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 3   GPGA----PRPGAPGT---WPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 55
           GP A    P+P APGT    P     AAPPA AA   P  PA A APAA      A P P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPA-APAA------APPPP 273

Query: 56  GCTPGTENAP 65
              P T   P
Sbjct: 274 PPAPATLARP 283



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 2   PGPGAPR-PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP----- 55
           P P AP  P AP       A   PP A A++A PP   AG P AA     A P P     
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAA----PAVPPPAAAQN 305

Query: 56  GCTPGTENAPA 66
           G + G   APA
Sbjct: 306 GGSAGAAPAPA 316



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 2   PGPGAP-RPGAPGTW-PVGFAVAAPPAAAASVAPPPPAVAG--APAAAFRGWVAAPDPG- 56
           PG G P RPG P    P+  A  APPAA   + PPP   AG  AP  A     A P+P  
Sbjct: 97  PGGGGPQRPGPPSPRRPLVPAGPAPPAA--KLRPPPEGSAGSCAPVPAAAAVAAGPEPAP 154

Query: 57  CTPGTENAPAS 67
             P     PA+
Sbjct: 155 AGPAKPAGPAA 165



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 2   PGPGA----PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGC 57
           PGPGA    P PG     P     AAPPAA    A  P + A +         A P P  
Sbjct: 329 PGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAA 388

Query: 58  TP 59
            P
Sbjct: 389 VP 390



 Score = 32.7 bits (73), Expect = 0.064
 Identities = 25/65 (38%), Positives = 25/65 (38%), Gaps = 14/65 (21%)

Query: 2   PGPGAPR-----PGAPGTWPVGFAVAAPPAAA-----ASVAPPPPAVAGAPAAAFRGWVA 51
           P P AP      PG P   P       PPAAA     A  AP P   AG PA    G   
Sbjct: 272 PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA----GVSG 327

Query: 52  APDPG 56
            P PG
Sbjct: 328 QPGPG 332



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPP----PAVAGAPAAAFRGWVAAPDPGC 57
           P P A +   P     G     P AAA +  P P    PA    PAA        P PG 
Sbjct: 119 PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP 178

Query: 58  TPGTENAP 65
            PG    P
Sbjct: 179 GPGPGPGP 186



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPA-----AAASVAPPPPAVAGAPAAAFRGWVAAPDPG 56
           P P AP    P   P    +A PP        A+ A PPPA A    +A      AP  G
Sbjct: 261 PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320

Query: 57  CTPGTENAP 65
              G    P
Sbjct: 321 GPAGVSGQP 329



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 1   MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAP 53
           +P P A  P APGT P G    A  A   S++  P A      A     V AP
Sbjct: 383 LPSPAAVPPPAPGT-PTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAP 434



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 31/90 (34%), Positives = 34/90 (37%), Gaps = 24/90 (26%)

Query: 2   PGPGAPR-------PGAPGTW----PVGFA--VAAPPAAAASVAPPPPAVAGAPAAAFRG 48
           PGP +PR       P  P       P G A   A  PAAAA  A P PA AG    A   
Sbjct: 105 PGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPA 164

Query: 49  WVAA-----------PDPGCTPGTENAPAS 67
            +AA           P PG  PG    P +
Sbjct: 165 ALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 58
           P P A  P      P   A AA PA       P   V  AP AA    +AA  P  T
Sbjct: 315 PAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA--QTLAASGPAST 369


>gi|11056048 doublesex and mab-3 related transcription factor 3
           [Homo sapiens]
          Length = 472

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 12  PGTWPVGFAVAAP---PAAAASVAPPPPAVAGAPAAAFRGWVAAPDPG 56
           PG  P G AVAAP   PA+  S   PP   A   AAA   W A P PG
Sbjct: 95  PGPPPPGDAVAAPQPPPASQPSQPQPPRPAAELAAAAALRWTAEPQPG 142


>gi|134142824 forkhead box D2 [Homo sapiens]
          Length = 495

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 1   MPGPGAPRPGA---PGTWPVGFAVAAPPAAAASVAPPPPAVAGAP------AAAFRGWVA 51
           +P  GAP PG    P   P  FA AA  AAA      PP  A AP      A+ F G  +
Sbjct: 274 LPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAGS 333

Query: 52  APDPGCTPGTENAP 65
           AP P    G+   P
Sbjct: 334 APAPAPASGSGPGP 347



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 17/38 (44%), Positives = 19/38 (50%)

Query: 6   APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA 43
           AP PG P       A +AP  A AS + P P  AG PA
Sbjct: 317 APPPGPPTASVFAGAGSAPAPAPASGSGPGPGPAGLPA 354



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 16/69 (23%)

Query: 4   PGAPRPG--APGTWPVGFAVAA------PPAAAASVAPPPPAVAGAPAAAFR-------- 47
           PGA  PG  A G +  G+ +A       PP  A    P P A A A AAA          
Sbjct: 253 PGAFLPGFAAYGAYGYGYGLALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPP 312

Query: 48  GWVAAPDPG 56
           G  AAP PG
Sbjct: 313 GRAAAPPPG 321



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPG 56
           PG G   PG P      FA AA P   A V     A A AP A   G +    PG
Sbjct: 428 PGAGEGSPGPP------FAAAAGPGGQAQVLAMLTAPALAPVA---GHIRLSHPG 473


>gi|115430223 galectin 3 [Homo sapiens]
          Length = 250

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 1  MPGPGAPRP-GAPGTW------PVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG----W 49
          + G G P P G PG W        G+  A+ P A    APP      AP  A+ G    +
Sbjct: 11 LSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAY 70

Query: 50 VAAPDPGCTPGTENAPAS 67
            AP PG  PG  + P +
Sbjct: 71 PGAPAPGVYPGPPSGPGA 88


>gi|46852172 kinesin family member 13B [Homo sapiens]
          Length = 1826

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 33/99 (33%), Positives = 37/99 (37%), Gaps = 37/99 (37%)

Query: 3    GPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAV----------------------AG 40
            GPG      PG+ P   A  A P A  S  PPP AV                      A 
Sbjct: 1583 GPGLDAAAPPGSMPT--APEAEPEAPISHPPPPTAVPAEEPPGPQQLVSPGRERPDLEAP 1640

Query: 41   APAAAFR------------GWVAAPDPGCTPGTE-NAPA 66
            AP + FR              + A DPGC+PG E NAPA
Sbjct: 1641 APGSPFRVRRVRASELRSFSRMLAGDPGCSPGAEGNAPA 1679


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 27/67 (40%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 3    GPGAPRPGAPGT-WPVGFAVAAPPAAAASVAPP-PPAVAGAPAAAFRGWVAAPDPGCTPG 60
            GP  P PGAPG   P GF     P       PP PPA+ GA        VA P P   PG
Sbjct: 1073 GPQGP-PGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAA-------VALPGPPGPPG 1124

Query: 61   TENAPAS 67
                P S
Sbjct: 1125 QPGLPGS 1131


>gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog,
          yeast) [Homo sapiens]
          Length = 545

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 22/48 (45%), Positives = 23/48 (47%)

Query: 7  PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPD 54
          P+  AP T     A AA  AA A  AP  PA A APAA   GW    D
Sbjct: 14 PQQAAPVTAAAAAAPAAATAAPAPAAPAAPAPAPAPAAQAVGWPICRD 61


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 6   APRPGAPGTWPVGFAVAAPPAAAASVAPPP-----PAVAGAPAAAFRGWVAAPDPGCTPG 60
           AP P          A AA PA AA+ AP P     PAVA APAAA     AAP     P 
Sbjct: 517 APAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAAS---AAPSHSQKPS 573

Query: 61  TENAPAS 67
                AS
Sbjct: 574 VPLIQAS 580



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 20  AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVA---------APDPGCTPGTENAPAS 67
           A AA  AAAA+ A P PA+A A A A     A         AP P   P    APA+
Sbjct: 504 AAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAA 560


>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
          Length = 1263

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPA--AAASVAPPPPAVAGA---PAAAFRGWVAAPDPG 56
           P P  P P  P   P G  +++PP+     +++PPPP    A   P       V  P P 
Sbjct: 599 PPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPS 658

Query: 57  CTPGTENAP 65
             PG    P
Sbjct: 659 SLPGGTAIP 667



 Score = 35.4 bits (80), Expect = 0.010
 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 4   PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
           P  P PG  GT      +  PPA   S  PPPP     P     G V    P   PG
Sbjct: 575 PAPPLPGDSGT-----IIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPG 626



 Score = 31.2 bits (69), Expect = 0.18
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 1   MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFR-GWVAAP 53
           MP P  P PG PG  P       P      + PPPP +   P   F  G  AAP
Sbjct: 704 MPPPPPPLPGGPGIPP-----PPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAP 752



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 1   MPGPGAPRPGAPGTWP--------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 52
           +P P  P PG+ G  P         G     PP       PPPP   G P       +  
Sbjct: 678 IPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPG------IPP 731

Query: 53  PDPG 56
           P PG
Sbjct: 732 PPPG 735



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 3   GPGAPRPGAPGTWPVGFAVAAPP--AAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
           G G P   +P + P G A+  PP    +A + PPPP + G+           P P   PG
Sbjct: 651 GVGIP---SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG-------IPPPPPPLPG 700

Query: 61  TENAP 65
               P
Sbjct: 701 EAGMP 705



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 3   GPGAPRP----GAPGTWPVGFAVAAPPAAAASVAP 33
           GPG P P    G P   P GF V A P     + P
Sbjct: 726 GPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTP 760


>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
          Length = 1272

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPA--AAASVAPPPPAVAGA---PAAAFRGWVAAPDPG 56
           P P  P P  P   P G  +++PP+     +++PPPP    A   P       V  P P 
Sbjct: 608 PPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPS 667

Query: 57  CTPGTENAP 65
             PG    P
Sbjct: 668 SLPGGTAIP 676



 Score = 35.4 bits (80), Expect = 0.010
 Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 4   PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
           P  P PG  GT      +  PPA   S  PPPP     P     G V    P   PG
Sbjct: 584 PAPPLPGDSGT-----IIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPG 635



 Score = 31.2 bits (69), Expect = 0.18
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 1   MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFR-GWVAAP 53
           MP P  P PG PG  P       P      + PPPP +   P   F  G  AAP
Sbjct: 713 MPPPPPPLPGGPGIPP-----PPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAP 761



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 1   MPGPGAPRPGAPGTWP--------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 52
           +P P  P PG+ G  P         G     PP       PPPP   G P       +  
Sbjct: 687 IPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPG------IPP 740

Query: 53  PDPG 56
           P PG
Sbjct: 741 PPPG 744



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 3   GPGAPRPGAPGTWPVGFAVAAPP--AAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
           G G P   +P + P G A+  PP    +A + PPPP + G+           P P   PG
Sbjct: 660 GVGIP---SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG-------IPPPPPPLPG 709

Query: 61  TENAP 65
               P
Sbjct: 710 EAGMP 714



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 3   GPGAPRP----GAPGTWPVGFAVAAPPAAAASVAP 33
           GPG P P    G P   P GF V A P     + P
Sbjct: 735 GPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTP 769


>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
          epsilon, 47kDa [Homo sapiens]
          Length = 357

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 4  PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTEN 63
          P  P P  P   P       P  AAA V    PA +  PAAA     A   PG TP +  
Sbjct: 12 PATPTP-VPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAA---AATAAPGQTPASAQ 67

Query: 64 APA 66
          APA
Sbjct: 68 APA 70



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 6  APRPGAPGTWPVGFAVAA----PPAAAASVAPP--PPAVAGAPAAAFRGWVAAPD-PGCT 58
          AP P AP   PV  A  A    P AAAA+ A P   PA A APA      +  P  PG  
Sbjct: 28 APTP-APAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPF 86

Query: 59 PG 60
          PG
Sbjct: 87 PG 88



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASV 31
           P P  P P  PG +P G  V   P   AS+
Sbjct: 73  PAPALPGPALPGPFPGGRVVRLHPVILASI 102


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 2   PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
           PGP  P  G PG  P+G  V AP A  A  +  PP   G P AA  G V  P P    G 
Sbjct: 841 PGPAGPA-GPPG--PIG-NVGAPGAKGARGSAGPPGATGFPGAA--GRVGPPGPSGNAGP 894

Query: 62  ENAP 65
              P
Sbjct: 895 PGPP 898


>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 365

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 26/64 (40%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 5   GAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVA---APDPGCTPGT 61
           G PRP  P   P       PP AA    PPPP   GAPA   RG  +   A  P   P T
Sbjct: 305 GEPRPAEPRAPP------RPPPAARR--PPPPPAPGAPARPLRGRRSHGPAARPRAVPTT 356

Query: 62  ENAP 65
             AP
Sbjct: 357 SLAP 360


>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
          Length = 1711

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 4   PGAPRP-GAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTE 62
           P  P P  AP   P+   V+APP A    AP PP+      A     V AP P  TP   
Sbjct: 291 PSGPVPLSAPAPAPLSVPVSAPPLALIQ-APVPPSAPTLVLAPVPTPVLAPMPASTPPAA 349

Query: 63  NAPAS 67
            AP S
Sbjct: 350 PAPPS 354


>gi|106507239 EGFR-coamplified and overexpressed protein [Homo
           sapiens]
          Length = 172

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 2   PGPGAPR--------PGAPGTWPVGFAVA-----APPAAAASVA-PPPPAVAGAPAAAFR 47
           PGPGA +        PG PG  PVG ++A      P +   SVA PPPPA    P   + 
Sbjct: 107 PGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFQVPPNSPQGSVACPPPPAYCNTPPPPYE 166

Query: 48  GWVAA 52
             V A
Sbjct: 167 QVVKA 171


>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
          Length = 1612

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 4    PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA---FRGWVAAPDPGCTPG 60
            P  PRP AP T P      APP       PPPP+ A +PA     F G  A P PG    
Sbjct: 1147 PPPPRPVAPPTRP------APPQ-----RPPPPSGARSPAPTRKEFGGIGAPPSPGVARR 1195

Query: 61   TENAPAS 67
               AP S
Sbjct: 1196 EMEAPKS 1202


>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
          Length = 1350

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 4    PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA---FRGWVAAPDPGCTPG 60
            P  PRP AP T P      APP       PPPP+ A +PA     F G  A P PG    
Sbjct: 1147 PPPPRPVAPPTRP------APPQ-----RPPPPSGARSPAPTRKEFGGIGAPPSPGVARR 1195

Query: 61   TENAPAS 67
               AP S
Sbjct: 1196 EMEAPKS 1202


>gi|169162161 PREDICTED: similar to EGFR-coamplified and
           overexpressed protein [Homo sapiens]
          Length = 172

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 2   PGPGAPR--------PGAPGTWPVGFAVA-----APPAAAASVA-PPPPAVAGAPAAAFR 47
           PGPGA +        PG PG  PVG ++A      P +   SVA PPPPA    P   + 
Sbjct: 107 PGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFQVPPNSPQGSVACPPPPAYCNTPPPPYE 166

Query: 48  GWVAA 52
             V A
Sbjct: 167 QVVKA 171


>gi|113411383 PREDICTED: similar to EGFR-coamplified and
           overexpressed protein [Homo sapiens]
          Length = 172

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 2   PGPGAPR--------PGAPGTWPVGFAVA-----APPAAAASVA-PPPPAVAGAPAAAFR 47
           PGPGA +        PG PG  PVG ++A      P +   SVA PPPPA    P   + 
Sbjct: 107 PGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFQVPPNSPQGSVACPPPPAYCNTPPPPYE 166

Query: 48  GWVAA 52
             V A
Sbjct: 167 QVVKA 171


>gi|33356148 formin-like 1 [Homo sapiens]
          Length = 1100

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 3   GPGAPRPGAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
           G  AP PG P G+     A AA PA  A+  PPPP + G P+       A P     PG+
Sbjct: 513 GGDAPTPGVPTGSPSPDLAPAAEPAPGAA-PPPPPPLPGLPSPQEAPPSAPPQAPPLPGS 571

Query: 62  ENAP 65
              P
Sbjct: 572 PEPP 575



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 2   PGPGAPRPGAPGTW--PVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 59
           P P  P PG P     P      APP   +   PP P + G            P P   P
Sbjct: 542 PPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPP------PPPPPPPPP 595

Query: 60  GTE 62
           GT+
Sbjct: 596 GTD 598



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 2   PGPGAPRPGA----PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGC 57
           P PG+P P      PG  P       PP       PPPP     P       +   D   
Sbjct: 567 PLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDALGRRDSEL 626

Query: 58  TPGTE 62
            PG +
Sbjct: 627 GPGVK 631


>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
           sapiens]
          Length = 729

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 5   GAPRPGAPGTWPVGFAVAAPPAAAASVAP----PPPAVAGAPAAAFRGWVAAPDPGCTPG 60
           G+  PG P   P     AAPP++   V P    PPPA   APA   R  + +   G +P 
Sbjct: 310 GSSSPGTPQPAPQLPLNAAPPSSVPPVPPSEALPPPACPSAPAP--RRSIISRLFGTSPA 367

Query: 61  TENAP 65
           TE AP
Sbjct: 368 TEAAP 372


>gi|10863877 phospholipid scramblase 1 [Homo sapiens]
          Length = 318

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 2   PGPGAPRPGAP----GTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP-- 55
           PGP    P  P    G  P GF V   P     V   P   AG P      W+ AP P  
Sbjct: 40  PGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVP------WMPAPQPPL 93

Query: 56  GCTPGTE 62
            C PG E
Sbjct: 94  NCPPGLE 100


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.133    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,247,668
Number of Sequences: 37866
Number of extensions: 360055
Number of successful extensions: 6190
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 506
Number of HSP's that attempted gapping in prelim test: 3454
Number of HSP's gapped (non-prelim): 2493
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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