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Search of human proteins with 239748366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748366 PREDICTED: hypothetical protein XP_002346629 [Homo
sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748366 PREDICTED: hypothetical protein XP_002346629 [Homo ... 255 6e-69
gi|49472830 hypothetical protein LOC116224 [Homo sapiens] 36 0.006
gi|239747210 PREDICTED: hypothetical protein XP_002346689 [Homo ... 31 0.25
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|18490978 intermediate filament family orphan isoform 2 [Homo ... 30 0.42
gi|89213250 intermediate filament family orphan isoform 4 [Homo ... 30 0.42
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 30 0.42
gi|195963410 MEF2 activating motif and SAP domain containing tra... 30 0.55
gi|32698970 MEF2 activating motif and SAP domain containing tran... 30 0.55
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 30 0.55
gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo ... 29 0.72
gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo ... 29 0.72
gi|13491174 MARCKS-like 1 [Homo sapiens] 29 0.72
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 29 0.94
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 29 0.94
gi|190358493 hypothetical protein LOC51313 isoform 2 [Homo sapiens] 28 1.2
gi|32526911 hypothetical protein LOC51313 isoform 2 [Homo sapiens] 28 1.2
gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens] 28 1.2
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 28 1.2
gi|150417989 cyclin K isoform 1 [Homo sapiens] 28 1.2
gi|224994173 roundabout 1 isoform d [Homo sapiens] 28 1.6
gi|224994171 roundabout 1 isoform c [Homo sapiens] 28 1.6
gi|19743806 roundabout 1 isoform b [Homo sapiens] 28 1.6
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo ... 28 1.6
gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo ... 28 1.6
>gi|239748366 PREDICTED: hypothetical protein XP_002346629 [Homo
sapiens]
Length = 120
Score = 255 bits (651), Expect = 6e-69
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MPVFKGHVDGPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRR 60
MPVFKGHVDGPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRR
Sbjct: 1 MPVFKGHVDGPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRR 60
Query: 61 KEQAPQSCKMQERSHPRRWLTKQQRSSKRIPVPVWGQFNPGPCVTTASLFGGSRRLRRVL 120
KEQAPQSCKMQERSHPRRWLTKQQRSSKRIPVPVWGQFNPGPCVTTASLFGGSRRLRRVL
Sbjct: 61 KEQAPQSCKMQERSHPRRWLTKQQRSSKRIPVPVWGQFNPGPCVTTASLFGGSRRLRRVL 120
>gi|49472830 hypothetical protein LOC116224 [Homo sapiens]
Length = 287
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 21 PAP-PQRGLGSSCAANTTLA-VLRGGRPPRETLHDVTRPDRRKEQAP------------- 65
PAP P RG+G C + + + V G PP TR R+ Q+P
Sbjct: 144 PAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFTTRRSQSPINCIRPSVLGPLK 203
Query: 66 QSCKMQERSHPRRWLTKQQRSSKRIPVPVWGQFNPGPCVTTASLFGGS 113
+ C+M+ P+R+ Q + + V +PG CV++ +L G S
Sbjct: 204 RKCEMETEYQPKRFF---QGITNMLSSDVAQLSDPGVCVSSDTLDGNS 248
>gi|239747210 PREDICTED: hypothetical protein XP_002346689 [Homo
sapiens]
Length = 275
Score = 30.8 bits (68), Expect = 0.25
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 8 VDGPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQAPQS 67
+DG P P P GS A + RG PP E + R R A
Sbjct: 15 LDGRTGEP--NSAPEPRWMDKGSCPPAELDRQMDRGSHPPAELDGQMDRGSR--PPAELD 70
Query: 68 CKMQERSHPRRWLTKQQRSSKRIPVPVWGQFNPG---PCVTTASLFGGSR 114
+M SHP L Q R P + GQ + G P + GGSR
Sbjct: 71 GQMDRGSHPPAELDGQMDGGSRPPAELDGQMDGGSRPPGELDGQMDGGSR 120
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 10 GPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQA 64
GP + +G GP P RG S A ++ R R PR T RP R + A
Sbjct: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 10 GPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQA 64
GP + +G GP P RG S A ++ R R PR T RP R + A
Sbjct: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 10 GPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQA 64
GP + +G GP P RG S A ++ R R PR T RP R + A
Sbjct: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 2 PVFKGHVDGPAALPPRG-RGP-----------APPQRGLGSSCAANTTLAVL-----RGG 44
P +GH D P + PRG +GP AP S C + GG
Sbjct: 44 PAGQGHEDPPRSTAPRGAQGPRSRPPLGADTSAPDLSRTSSRCRRRRRRGCVSRLGSEGG 103
Query: 45 RPPRETLHDVTRPDRRKEQAPQSCKM 70
R P H T P R + Q P+ C +
Sbjct: 104 RRPAR--HRPTWPRRAEPQVPEECSL 127
>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 30.0 bits (66), Expect = 0.42
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 2 PVFKGHVDGPAALPPRG-RGP-----------APPQRGLGSSCAANTTLAVL-----RGG 44
P +GH D P + PRG +GP AP S C + GG
Sbjct: 44 PAGQGHEDPPRSTAPRGAQGPRSRPPLGADTSAPDLSRTSSRCRRRRRRGCVSRLGSEGG 103
Query: 45 RPPRETLHDVTRPDRRKEQAPQSCKM 70
R P H T P R + Q P+ C +
Sbjct: 104 RRPAR--HRPTWPRRAEPQVPEECSL 127
>gi|18490978 intermediate filament family orphan isoform 2 [Homo
sapiens]
Length = 559
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 10 GPAALPPRGRGPAPP-----QRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQA 64
GPAA P G GPAPP + LGS+ TL + R +H++ R +R E+
Sbjct: 47 GPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNL--RFRCFLAKVHELERRNRLLEKQ 104
Query: 65 PQSCKMQERSHPRRWLTKQQRS 86
Q ++E RR L ++ ++
Sbjct: 105 LQQA-LEEGKQGRRGLGRRDQA 125
>gi|89213250 intermediate filament family orphan isoform 4 [Homo
sapiens]
Length = 563
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 10 GPAALPPRGRGPAPP-----QRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQA 64
GPAA P G GPAPP + LGS+ TL + R +H++ R +R E+
Sbjct: 47 GPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNL--RFRCFLAKVHELERRNRLLEKQ 104
Query: 65 PQSCKMQERSHPRRWLTKQQRS 86
Q ++E RR L ++ ++
Sbjct: 105 LQQA-LEEGKQGRRGLGRRDQA 125
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 30.0 bits (66), Expect = 0.42
Identities = 27/102 (26%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 13 ALPPRGRG------------PAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRR 60
A PP GR PAPP SS + LH++ P R
Sbjct: 294 ASPPAGRPTPAPRKASESTTPAPPTPRPRSSLQQENLVEQAGSSSLVNGRLHELPVPKPR 353
Query: 61 KEQAPQSCKMQERSHPRRWLTKQQRSSKRIPVPVWGQFNPGP 102
P R P W+T Q K+ P P+ +PGP
Sbjct: 354 GTPKPSEGTPAPRKDPP-WITLVQAEPKKKPAPLPPSSSPGP 394
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 26 RGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQAPQSCKMQE------RSHPRRW 79
RGL S + L +RGG PPRE RP R+E +P + R+
Sbjct: 187 RGLPVSGTKSMLLERMRGGAPPRE------RPKPRREDSPAGAPWPRLKPKALAAARRQG 240
Query: 80 LTKQQRSSKRIPVP 93
K +S R P+P
Sbjct: 241 SVKPSAASHRPPLP 254
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 26 RGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQAPQSCKMQE------RSHPRRW 79
RGL S + L +RGG PPRE RP R+E +P + R+
Sbjct: 84 RGLPVSGTKSMLLERMRGGAPPRE------RPKPRREDSPAGAPWPRLKPKALAAARRQG 137
Query: 80 LTKQQRSSKRIPVP 93
K +S R P+P
Sbjct: 138 SVKPSAASHRPPLP 151
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 3 VFKGHVDGPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRR 60
+++ H G PP G PAP GS + LA R P + D+++ RR
Sbjct: 746 LYELHAAGAPPPPPPGHAPAPESPRPGSGSGSGPGLAPARSPGPAADGPIDLSKKPRR 803
>gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo
sapiens]
Length = 111
Score = 29.3 bits (64), Expect = 0.72
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 11 PAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPR--ETLHDVTRPDRRKEQAPQSC 68
P ALPP G GP P G+ C + G P+ E R + P C
Sbjct: 2 PLALPPLGSGPQP-----GNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGC 56
Query: 69 KMQERSHPRRWLTKQQRSSKRIPVPVWG 96
+ P +++R+ P V G
Sbjct: 57 LRRRPPEPGPRGVRRRRTGGLKPARVPG 84
>gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo
sapiens]
Length = 111
Score = 29.3 bits (64), Expect = 0.72
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 11 PAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPR--ETLHDVTRPDRRKEQAPQSC 68
P ALPP G GP P G+ C + G P+ E R + P C
Sbjct: 2 PLALPPLGSGPQP-----GNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGC 56
Query: 69 KMQERSHPRRWLTKQQRSSKRIPVPVWG 96
+ P +++R+ P V G
Sbjct: 57 LRRRPPEPGPRGVRRRRTGGLKPARVPG 84
>gi|13491174 MARCKS-like 1 [Homo sapiens]
Length = 195
Score = 29.3 bits (64), Expect = 0.72
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 6 GHVDGPAALPPRGRGPAPPQRGLGSSCAAN---------TTLAVLRGGRPPRET 50
GHV L P+G G +PP G + A + A +G PP+ET
Sbjct: 32 GHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKET 85
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 28.9 bits (63), Expect = 0.94
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 6 GHVDGPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRP-PRETLHDVTRPDRRKEQA 64
G + L P+G P Q G+ A TLA L G RP P E P R E
Sbjct: 100 GGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPE------EPPRELESV 153
Query: 65 P 65
P
Sbjct: 154 P 154
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 28.9 bits (63), Expect = 0.94
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 9 DGPAALPPRGRGPAPPQR----GLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQA 64
+GPAA PP +PP L + AA R PP + P+R+ E+
Sbjct: 507 EGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGA--ERAAPERKAERG 564
Query: 65 PQSCKMQE-------RSHPRRWLTKQ-QRSSKRIPV----PVW 95
+ + R+ PR +++ +R+S R+P+ PVW
Sbjct: 565 GAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPVW 607
>gi|190358493 hypothetical protein LOC51313 isoform 2 [Homo sapiens]
Length = 519
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 14 LPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQAPQS 67
+P G P +G GS+ N LR R + +P RRK+ A S
Sbjct: 84 IPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPANIRGTVKPKRRKKHAVAS 137
>gi|32526911 hypothetical protein LOC51313 isoform 2 [Homo sapiens]
Length = 519
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 14 LPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQAPQS 67
+P G P +G GS+ N LR R + +P RRK+ A S
Sbjct: 84 IPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPANIRGTVKPKRRKKHAVAS 137
>gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens]
Length = 527
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 14 LPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRRKEQAPQS 67
+P G P +G GS+ N LR R + +P RRK+ A S
Sbjct: 84 IPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPANIRGTVKPKRRKKHAVAS 137
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 42 RGGRPPRETLHDVTRPDR---RKEQAPQSCKMQERSHPRRWLTKQ 83
R G+P +E RP + RKE+ P++ + + P+RW +++
Sbjct: 241 REGKPRKEKPRKEERPKKERPRKEERPRAAREPREALPQRWESRE 285
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 11 PAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPP 47
P LPP P P GLG A+ AV GG+PP
Sbjct: 521 PPRLPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPP 557
>gi|224994173 roundabout 1 isoform d [Homo sapiens]
Length = 1551
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 19 RGPAPPQRGLGSSCAA----NTTLAVLRGGRP----------PRETLHDVTRPDRRKE 62
RGP PP RG SS AA + + A L P ET H +PDRR++
Sbjct: 1137 RGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEETGHMQHQPDRRRQ 1194
>gi|224994171 roundabout 1 isoform c [Homo sapiens]
Length = 1606
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 19 RGPAPPQRGLGSSCAA----NTTLAVLRGGRP----------PRETLHDVTRPDRRKE 62
RGP PP RG SS AA + + A L P ET H +PDRR++
Sbjct: 1192 RGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEETGHMQHQPDRRRQ 1249
>gi|19743806 roundabout 1 isoform b [Homo sapiens]
Length = 1612
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 19 RGPAPPQRGLGSSCAA----NTTLAVLRGGRP----------PRETLHDVTRPDRRKE 62
RGP PP RG SS AA + + A L P ET H +PDRR++
Sbjct: 1198 RGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEETGHMQHQPDRRRQ 1255
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 10 GPAALPPRGRGPAPPQRGLGSSCAANTTLAVLRGGRPPRETLHDVTRPDRR 60
GP++ P GR P GSS A R GRP RE DVT ++R
Sbjct: 113 GPSSSPGAGRAPGAMASPSGSSKATGKPRG--RDGRPRREE-DDVTPEEKR 160
>gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo
sapiens]
Length = 1562
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 19 RGPAPPQRGLGSSCAA----NTTLAVLRGGRP----------PRETLHDVTRPDRRKE 62
RGP PP RG SS AA + + A L P ET H +PDRR++
Sbjct: 1148 RGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEETGHMQHQPDRRRQ 1205
>gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo
sapiens]
Length = 1615
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 19 RGPAPPQRGLGSSCAA----NTTLAVLRGGRP----------PRETLHDVTRPDRRKE 62
RGP PP RG SS AA + + A L P ET H +PDRR++
Sbjct: 1201 RGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEETGHMQHQPDRRRQ 1258
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,553,539
Number of Sequences: 37866
Number of extensions: 351597
Number of successful extensions: 1879
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1800
Number of HSP's gapped (non-prelim): 169
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.