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Search of human proteins with 239748132
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748132 PREDICTED: hypothetical protein XP_002346560 [Homo
sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748132 PREDICTED: hypothetical protein XP_002346560 [Homo ... 307 2e-84
gi|58331230 DALR anticodon binding domain containing 3 isoform 1... 307 2e-84
gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens] 33 0.13
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 33 0.13
gi|157057547 Fc receptor-like 6 [Homo sapiens] 30 0.63
gi|226958551 Fc receptor-like 1 isoform 3 precursor [Homo sapiens] 30 1.1
gi|226958547 Fc receptor-like 1 isoform 2 precursor [Homo sapiens] 30 1.1
gi|16418419 Fc receptor-like 1 isoform 1 precursor [Homo sapiens] 30 1.1
gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens] 30 1.1
gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo sa... 29 1.4
gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo sa... 29 1.4
gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo sap... 29 1.4
gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo sap... 29 1.4
gi|154937380 hypothetical protein LOC642475 [Homo sapiens] 29 1.4
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 29 1.8
gi|112420992 crumbs homolog 2 [Homo sapiens] 29 1.8
gi|4506755 retinoid X receptor, alpha [Homo sapiens] 28 2.4
gi|169216121 PREDICTED: hypothetical protein [Homo sapiens] 28 2.4
gi|157694526 Fc receptor-like 5 [Homo sapiens] 28 3.1
gi|19923629 Fc receptor-like 2 precursor [Homo sapiens] 28 3.1
gi|190358493 hypothetical protein LOC51313 isoform 2 [Homo sapiens] 28 3.1
gi|32526911 hypothetical protein LOC51313 isoform 2 [Homo sapiens] 28 3.1
gi|13376617 prostaglandin E synthase 2 [Homo sapiens] 28 4.1
gi|195963410 MEF2 activating motif and SAP domain containing tra... 28 4.1
gi|32698970 MEF2 activating motif and SAP domain containing tran... 28 4.1
gi|109148544 alkB, alkylation repair homolog 6 isoform 2 [Homo s... 28 4.1
gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens] 28 4.1
gi|111955326 MLX interacting protein [Homo sapiens] 27 5.3
gi|169169118 PREDICTED: hypothetical protein [Homo sapiens] 27 6.9
gi|91208420 bassoon protein [Homo sapiens] 27 6.9
>gi|239748132 PREDICTED: hypothetical protein XP_002346560 [Homo
sapiens]
Length = 154
Score = 307 bits (787), Expect = 2e-84
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL
Sbjct: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
Query: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL
Sbjct: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
Query: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHG 154
HCPALRSSPCALRLSQLRTVLVADHLARALRAHG
Sbjct: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHG 154
>gi|58331230 DALR anticodon binding domain containing 3 isoform 1
[Homo sapiens]
Length = 543
Score = 307 bits (787), Expect = 2e-84
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL
Sbjct: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHL 60
Query: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL
Sbjct: 61 LHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLL 120
Query: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHG 154
HCPALRSSPCALRLSQLRTVLVADHLARALRAHG
Sbjct: 121 HCPALRSSPCALRLSQLRTVLVADHLARALRAHG 154
>gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens]
Length = 190
Score = 32.7 bits (73), Expect = 0.13
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 13 GALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHAL-------- 64
GA NAA PG P R +D + R L R + ++PE L AL
Sbjct: 53 GAANAAPAPGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSL 112
Query: 65 ---ACLQGPGVAPVLRCAPTP 82
C+ V P++ + TP
Sbjct: 113 GTILCVPSVPVGPIVLTSATP 133
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 32.7 bits (73), Expect = 0.13
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 58 EHLLHALACLQGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQR 117
+H LA QGPG+ PV A ++ Q+Q A F V + + A SP G
Sbjct: 252 QHQAALLAAAQGPGLGPV-------AAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPG 304
Query: 118 VLLHCPA 124
L PA
Sbjct: 305 TLPGLPA 311
>gi|157057547 Fc receptor-like 6 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 0.63
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 62 HALACLQGP--GVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAA-----YATPASPASL 114
H C+ G G + + C P G +Q Q + RV + V+ + PA PA +
Sbjct: 162 HPELCIPGAKEGDSGLYWCEVAPEGGQVQKQSPQLEVRVQAPVSRPVLTLHHGPADPA-V 220
Query: 115 GQRVLLHCPALRSSPCALRLSQLRTVLVADHLA 147
G V L C A R SP L L +V +H A
Sbjct: 221 GDMVQLLCEAQRGSPPILYSFYLDEKIVGNHSA 253
>gi|226958551 Fc receptor-like 1 isoform 3 precursor [Homo sapiens]
Length = 428
Score = 29.6 bits (65), Expect = 1.1
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 16 NAALGPGGP--VWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
+ A+G G +W K +L+S+ R+L A ++ V E C+ G
Sbjct: 135 SVAMGTGDITFLWYKGAVGLNLQSKT----QRSLTAEYEIPSVRESDAEQYYCVAENGYG 190
Query: 74 PVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCPALRSSP 129
P +P+GL R V +L A P + A++ + LHC ALR SP
Sbjct: 191 P------SPSGLVSITVRIPVSRPILMLRA----PRAQAAVEDVLELHCEALRGSP 236
>gi|226958547 Fc receptor-like 1 isoform 2 precursor [Homo sapiens]
Length = 366
Score = 29.6 bits (65), Expect = 1.1
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 16 NAALGPGGP--VWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
+ A+G G +W K +L+S+ R+L A ++ V E C+ G
Sbjct: 135 SVAMGTGDITFLWYKGAVGLNLQSKT----QRSLTAEYEIPSVRESDAEQYYCVAENGYG 190
Query: 74 PVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCPALRSSP 129
P +P+GL R V +L A P + A++ + LHC ALR SP
Sbjct: 191 P------SPSGLVSITVRIPVSRPILMLRA----PRAQAAVEDVLELHCEALRGSP 236
>gi|16418419 Fc receptor-like 1 isoform 1 precursor [Homo sapiens]
Length = 429
Score = 29.6 bits (65), Expect = 1.1
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 16 NAALGPGGP--VWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
+ A+G G +W K +L+S+ R+L A ++ V E C+ G
Sbjct: 135 SVAMGTGDITFLWYKGAVGLNLQSKT----QRSLTAEYEIPSVRESDAEQYYCVAENGYG 190
Query: 74 PVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCPALRSSP 129
P +P+GL R V +L A P + A++ + LHC ALR SP
Sbjct: 191 P------SPSGLVSITVRIPVSRPILMLRA----PRAQAAVEDVLELHCEALRGSP 236
>gi|190358490 hypothetical protein LOC51313 isoform 1 [Homo sapiens]
Length = 527
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 64 LACLQGPGVAPVLRCAPTPAGLSLQ-LQRSAVF----ERVLSAVAAYATPASPASLGQRV 118
L L+G VLRC P+P GL Q L S VF +R+L + + A Q
Sbjct: 246 LLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVFAFHLDRILGLNRTLPSVSRKAEFIQAA 305
Query: 119 LLHCPALR 126
C ++R
Sbjct: 306 AAACLSMR 313
>gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo
sapiens]
Length = 1032
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTVLVA 143
R+A+FE+VL + Y S + LL P +L PCAL ++++T A
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKT---A 188
Query: 144 DH 145
DH
Sbjct: 189 DH 190
>gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo
sapiens]
Length = 1093
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTVLVA 143
R+A+FE+VL + Y S + LL P +L PCAL ++++T A
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKT---A 188
Query: 144 DH 145
DH
Sbjct: 189 DH 190
>gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1087
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTVLVA 143
R+A+FE+VL + Y S + LL P +L PCAL ++++T A
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKT---A 188
Query: 144 DH 145
DH
Sbjct: 189 DH 190
>gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo
sapiens]
Length = 1148
Score = 29.3 bits (64), Expect = 1.4
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 91 RSAVFERVLSAVAAYATPASPASLGQRVLLHCP-------ALRSSPCALRLSQLRTVLVA 143
R+A+FE+VL + Y S + LL P +L PCAL ++++T A
Sbjct: 132 RTALFEKVLDKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKT---A 188
Query: 144 DH 145
DH
Sbjct: 189 DH 190
>gi|154937380 hypothetical protein LOC642475 [Homo sapiens]
Length = 719
Score = 29.3 bits (64), Expect = 1.4
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 43 PHRALQARFDDGQVPEHLLHALACLQGPGVAP------VLRCAPTPAGLSLQLQRSAVFE 96
PH+ Q+ +++G + + L+ ACL+ G A L A G L+ Q A+
Sbjct: 96 PHQVPQSSWEEGVLADLALYTAACLEEAGFAGTQATVLTLSSALEARGERLEDQVHALVR 155
Query: 97 RVLSAVAAYATPASPASLGQRVL--LHCPALRSSPCALRLSQLRTVLVADHLARAL 150
+L+ V + A P RVL L R CAL L VA L R+L
Sbjct: 156 GLLAQVPSLA-EGRPWRAALRVLSALALEHARDVVCALLPRSLPADRVAAELWRSL 210
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 28.9 bits (63), Expect = 1.8
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 1 MATRRLGVGETLGALNAAL-GPG-GPVWIKETRTRHLRSRDFLAPHRALQA 49
+A R+LG G L A A G G GPVW+ E R + L HR +A
Sbjct: 56 VACRQLGCGGALAAPGGAFFGEGAGPVWLSELACRGNEGQLGLCHHRGWKA 106
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 28.9 bits (63), Expect = 1.8
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 64 LACLQGP-GVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHC 122
L GP +A P PAG+S A F L V P LG+ VLL C
Sbjct: 544 LCVASGPVALASTASATPLPAGISSAQLGDATFAGCLQDVRVDGHLLLPEDLGENVLLGC 603
Query: 123 ---PALRSSPC 130
R PC
Sbjct: 604 ERREQCRPLPC 614
>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
Length = 462
Score = 28.5 bits (62), Expect = 2.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 80 PTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQ--RVLLHCPALRS 127
P GLS + A+ E+V +++ AY P G+ ++LL PALRS
Sbjct: 378 PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRS 427
>gi|169216121 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 28.5 bits (62), Expect = 2.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 78 CAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCP 123
CAPT + Q Q S R+L AA+ + +PASL +RV + P
Sbjct: 15 CAPTKSPFQSQRQASKAPSRLLPLQAAHLS-CAPASLTRRVRICLP 59
>gi|157694526 Fc receptor-like 5 [Homo sapiens]
Length = 977
Score = 28.1 bits (61), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 102 VAAYATPASPASLGQRVLLHCPALRSSPCAL 132
V P + A++G + LHC ALR SP L
Sbjct: 753 VLTLRAPGTHAAVGDLLELHCEALRGSPLIL 783
>gi|19923629 Fc receptor-like 2 precursor [Homo sapiens]
Length = 508
Score = 28.1 bits (61), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 102 VAAYATPASPASLGQRVLLHCPALRSSP 129
V +P + A++G + LHC ALR SP
Sbjct: 301 VLTLRSPGAQAAVGDLLELHCEALRGSP 328
>gi|190358493 hypothetical protein LOC51313 isoform 2 [Homo sapiens]
Length = 519
Score = 28.1 bits (61), Expect = 3.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 64 LACLQGPGVAPVLRCAPTPAGLSLQ-LQRSAVF 95
L L+G VLRC P+P GL Q L S VF
Sbjct: 246 LLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVF 278
>gi|32526911 hypothetical protein LOC51313 isoform 2 [Homo sapiens]
Length = 519
Score = 28.1 bits (61), Expect = 3.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 64 LACLQGPGVAPVLRCAPTPAGLSLQ-LQRSAVF 95
L L+G VLRC P+P GL Q L S VF
Sbjct: 246 LLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVF 278
>gi|13376617 prostaglandin E synthase 2 [Homo sapiens]
Length = 377
Score = 27.7 bits (60), Expect = 4.1
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 1 MATRRLGVGETLGALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQ 48
+A R G LGA AAL GG + + T HLR++D A A Q
Sbjct: 48 VAAARKGSPRLLGA--AALALGGALGLYHTARWHLRAQDLHAERSAAQ 93
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 27.7 bits (60), Expect = 4.1
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 14 ALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
AL + GPG E + R L P+R + +D P+ L + L PG
Sbjct: 277 ALTPSSGPGSAALTLEEELQEAIRRAQLLPNRGIDDILEDQVEPDDPLPPIP-LDFPGSF 335
Query: 74 PVLRCAPTPAGLS 86
VL +P GLS
Sbjct: 336 DVLSPSPDSEGLS 348
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 27.7 bits (60), Expect = 4.1
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 14 ALNAALGPGGPVWIKETRTRHLRSRDFLAPHRALQARFDDGQVPEHLLHALACLQGPGVA 73
AL + GPG E + R L P+R + +D P+ L + L PG
Sbjct: 174 ALTPSSGPGSAALTLEEELQEAIRRAQLLPNRGIDDILEDQVEPDDPLPPIP-LDFPGSF 232
Query: 74 PVLRCAPTPAGLS 86
VL +P GLS
Sbjct: 233 DVLSPSPDSEGLS 245
>gi|109148544 alkB, alkylation repair homolog 6 isoform 2 [Homo
sapiens]
Length = 266
Score = 27.7 bits (60), Expect = 4.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 86 SLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLHCPALRSSPCALRLSQLRTVLVADH 145
SL + R + R+L +AA A A+ CP+ R C +R R L
Sbjct: 196 SLLVLRGPAYTRLLHGIAAARVDALDAASSPPNAAACPSARPGACLVR--GTRVSLTIRR 253
Query: 146 LARALRA 152
+ R LRA
Sbjct: 254 VPRVLRA 260
>gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]
Length = 1151
Score = 27.7 bits (60), Expect = 4.1
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 13 GALNAALGPGGPVWIKETRTRHLRSRDFLA-PHRALQARFDDGQVPEHLLHALACLQGPG 71
GAL +++GP P W + +S LA P +L + QV E+ + + PG
Sbjct: 987 GALQSSVGPAEPTWAQG------QSASLLAEPVPSLTSI----QVLENSMSITSQYCAPG 1036
Query: 72 VA----------PVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPASLGQRVLLH 121
A PV P L+LQ+ S+ VL ++ + P SL Q + H
Sbjct: 1037 DACRPGNFTYHIPVSSGTPLHLSLTLQMNSSSPVSVVLCSLRSKEEPCEEGSLPQSLHTH 1096
>gi|111955326 MLX interacting protein [Homo sapiens]
Length = 919
Score = 27.3 bits (59), Expect = 5.3
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 70 PGVAPVLRCAPTPAGLSL--------QLQRSA-------VFERVLSAVAAYATPASPASL 114
P ++PVL P PA Q Q+ A V SA + PA+ S
Sbjct: 444 PPISPVLPLVPPPATALNPPAPPTFHQPQKFAGVNKAPSVITHTASATLTHDAPATTFSQ 503
Query: 115 GQRVLL--HCPALRSSPCALRLS 135
Q +++ H PA ++PC L LS
Sbjct: 504 SQGLVITTHHPAPSAAPCGLALS 526
>gi|169169118 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 26.9 bits (58), Expect = 6.9
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 41 LAPHRALQARFDD-----GQVPEHLLHALACLQ---GPGVAPVLR-----CAPTPAGLSL 87
+A RA++A D GQ P H LH A LQ G APV R A P L L
Sbjct: 1 MAGCRAVEAHVADANALLGQAPPHHLHDQARLQLERGEVAAPVNRNGLAQDAVQPLHL-L 59
Query: 88 QLQRSAVFERVLSAVAAYATPAS 110
+Q AV R + V A T A+
Sbjct: 60 PVQHIAVRRRAFAIVQAMPTEAA 82
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 26.9 bits (58), Expect = 6.9
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 16/45 (35%)
Query: 68 QGPGVAPVLRCAPTPAGLSLQLQRSAVFERVLSAVAAYATPASPA 112
QGPG AP PAGL Y TPASPA
Sbjct: 1376 QGPGTPATTAVAPCPAGLP----------------RGYMTPASPA 1404
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,457,316
Number of Sequences: 37866
Number of extensions: 303193
Number of successful extensions: 1072
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1056
Number of HSP's gapped (non-prelim): 40
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.