Guide to the Human Genome
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Name: PTGES2 Sequence: fasta or formatted (377aa) NCBI GI: 13376617
Description:

prostaglandin E synthase 2

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes
Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         50           3
 C cysteine            0.8          3           1
 D aspartate           4.0         15           2
 E glutamate           6.1         23           2
 F phenylalanine       2.7         10           1
 G glycine             7.4         28           2
 H histidine           2.4          9           1
 I isoleucine          2.9         11           2
 K lysine              5.0         19           1
 L leucine            10.6         40           2
 M methionine          2.4          9           1
 N asparagine          2.1          8           1
 P proline             5.3         20           1
 Q glutamine           5.0         19           2
 R arginine            7.2         27           2
 S serine              5.6         21           2
 T threonine           3.2         12           1
 V valine              7.2         27           2
 W tryptophan          2.4          9           1
 Y tyrosine            4.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostaglandin E synthase 2 
PTPRK                 0.012   protein tyrosine phosphatase, receptor type, K isof...
PTPRK                 0.012   protein tyrosine phosphatase, receptor type, K isofo...
GATA4                 0.010   GATA binding protein 4 
MYO15A                0.010   myosin XV 
SPAG1                 0.010   sperm associated antigen 1 
SPAG1                 0.010   sperm associated antigen 1 
NXPH4                 0.010   neurexophilin 4 
SHANK1                0.010   SH3 and multiple ankyrin repeat domains 1 
SKIV2L2               0.008   superkiller viralicidic activity 2-like 2 
C19orf6               0.008   membralin isoform 1 
PCDH8                 0.008   protocadherin 8 isoform 2 precursor 
PCDH8                 0.008   protocadherin 8 isoform 1 precursor 
PTPRT                 0.007   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.007   protein tyrosine phosphatase, receptor type, T isof...
EP400                 0.007   E1A binding protein p400 
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
RIN3                  0.007   Ras and Rab interactor 3 
NNT                   0.007   nicotinamide nucleotide transhydrogenase 
NNT                   0.007   nicotinamide nucleotide transhydrogenase 
ACTR5                 0.007   ARP5 actin-related protein 5 homolog 
BTBD17                0.007   BTB (POZ) domain containing 17 
SH3RF3                0.007   SH3 domain containing ring finger 3 
LOC100291908          0.007   PREDICTED: hypothetical protein XP_002345432 
LOC100289408          0.007   PREDICTED: hypothetical protein 
LOC100289408          0.007   PREDICTED: hypothetical protein XP_002344217 
TMPRSS4               0.007   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.007   transmembrane protease, serine 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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