Guide to the Human Genome
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Name: ALKBH6 Sequence: fasta or formatted (266aa) NCBI GI: 109148544
Description:

alkB, alkylation repair homolog 6 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {161aa} alkB, alkylation repair homolog 6 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         20           3
 C cysteine            1.1          3           1
 D aspartate           4.1         11           3
 E glutamate           6.4         17           4
 F phenylalanine       1.9          5           1
 G glycine             9.0         24           2
 H histidine           1.9          5           1
 I isoleucine          3.0          8           1
 K lysine              2.6          7           1
 L leucine            13.2         35           3
 M methionine          2.3          6           1
 N asparagine          2.6          7           1
 P proline            12.0         32           3
 Q glutamine           3.0          8           1
 R arginine            9.0         24           2
 S serine              4.9         13           2
 T threonine           3.8         10           2
 V valine              7.1         19           1
 W tryptophan          1.1          3           1
 Y tyrosine            3.4          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alkB, alkylation repair homolog 6 isoform 2 
ALKBH6                0.525   alkB, alkylation repair homolog 6 isoform 1 
ALKBH8                0.069   alkB, alkylation repair homolog 8 
RTN4                  0.013   reticulon 4 isoform D 
RTN4                  0.013   reticulon 4 isoform A 
ALKBH4                0.013   alkB, alkylation repair homolog 4 
RTN4                  0.011   reticulon 4 isoform B 
ARX                   0.011   aristaless related homeobox 
DYSF                  0.011   dysferlin isoform 2 
DYSF                  0.011   dysferlin isoform 8 
DYSF                  0.011   dysferlin isoform 1 
DYSF                  0.011   dysferlin isoform 3 
DYSF                  0.011   dysferlin isoform 4 
DYSF                  0.011   dysferlin isoform 5 
DYSF                  0.011   dysferlin isoform 6 
DYSF                  0.011   dysferlin isoform 7 
DYSF                  0.011   dysferlin isoform 14 
DYSF                  0.011   dysferlin isoform 13 
DYSF                  0.011   dysferlin isoform 12 
DYSF                  0.011   dysferlin isoform 11 
DYSF                  0.011   dysferlin isoform 10 
DYSF                  0.011   dysferlin isoform 9 
LOC100291797          0.011   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.011   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.011   PREDICTED: hypothetical protein XP_002342316 
SHANK3                0.011   SH3 and multiple ankyrin repeat domains 3 
MLL4                  0.011   myeloid/lymphoid or mixed-lineage leukemia 4 
FRAT2                 0.011   GSK-3 binding protein FRAT2 
DUSP8                 0.010   dual specificity phosphatase 8 
ARPP-21               0.010   cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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