Guide to the Human Genome
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Name: C8orf73 Sequence: fasta or formatted (719aa) NCBI GI: 154937380
Description:

hypothetical protein LOC642475

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         96           4
 C cysteine            1.9         14           2
 D aspartate           3.5         25           2
 E glutamate           5.1         37           2
 F phenylalanine       1.5         11           2
 G glycine             8.8         63           2
 H histidine           3.2         23           2
 I isoleucine          0.8          6           1
 K lysine              1.3          9           1
 L leucine            16.6        119           3
 M methionine          1.1          8           1
 N asparagine          0.8          6           1
 P proline             8.2         59           3
 Q glutamine           4.3         31           2
 R arginine           10.2         73           2
 S serine              6.3         45           2
 T threonine           3.8         27           1
 V valine              6.8         49           2
 W tryptophan          1.8         13           1
 Y tyrosine            0.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC642475 
C1orf175              0.113   hypothetical protein LOC374977 
FLJ43860              0.095   hypothetical protein LOC389690 
C20orf132             0.094   hypothetical protein LOC140699 isoform 1 
LOC377711             0.089   PREDICTED: hypothetical protein LOC377711 isoform 5...
HEATR7A               0.089   HEAT repeat containing 7A isoform 1 
HEATR7B1              0.069   PREDICTED: HEAT repeat containing 7B1 
HEATR7B1              0.068   PREDICTED: HEAT repeat containing 7B1 
HEATR7B1              0.064   PREDICTED: HEAT repeat containing 7B1 
HEATR7B2              0.043   HEAT repeat family member 7B2 
C1orf129              0.011   hypothetical protein LOC80133 
ARHGAP6               0.010   Rho GTPase activating protein 6 isoform 3 
ARHGAP6               0.010   Rho GTPase activating protein 6 isoform 1 
ANKRD11               0.009   ankyrin repeat domain 11 
PRB3                  0.009   proline-rich protein BstNI subfamily 3 precursor [H...
CTF1                  0.009   cardiotrophin 1 isoform 1 
LOC100131851          0.009   PREDICTED: hypothetical protein 
LOC100130751          0.009   PREDICTED: hypothetical protein 
LOC100131851          0.009   PREDICTED: hypothetical protein 
FOXL2                 0.009   forkhead box L2 
ZNF219                0.009   zinc finger protein 219 
ZNF219                0.009   zinc finger protein 219 
ZNF219                0.009   zinc finger protein 219 
GDF5                  0.008   growth differentiation factor 5 preproprotein 
CTF1                  0.008   cardiotrophin 1 isoform 2 
PRB4                  0.008   proline-rich protein BstNI subfamily 4 precursor [Ho...
CYTSA                 0.007   cytospin A 
CYTSA                 0.007   cytospin A 
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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