Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ANKRD18A Sequence: fasta or formatted (1002aa) NCBI GI: 239749578
Description:

PREDICTED: ankyrin repeat domain 18A

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [1415aa] PREDICTED: ankyrin repeat domain 18A
alt prot [1415aa] PREDICTED: ankyrin repeat domain 18A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         68           2
 C cysteine            1.7         17           1
 D aspartate           4.6         46           2
 E glutamate          12.3        123           3
 F phenylalanine       2.5         25           1
 G glycine             2.5         25           1
 H histidine           2.9         29           2
 I isoleucine          5.0         50           1
 K lysine             10.8        108           3
 L leucine            12.7        127           3
 M methionine          2.9         29           1
 N asparagine          6.7         67           2
 P proline             1.7         17           1
 Q glutamine           5.0         50           2
 R arginine            6.2         62           2
 S serine              5.4         54           2
 T threonine           3.9         39           2
 V valine              4.0         40           2
 W tryptophan          0.4          4           1
 Y tyrosine            2.2         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.988   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.988   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.941   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.940   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.940   PREDICTED: ankyrin repeat domain 18B 
ANKRD26               0.256   ankyrin repeat domain 26 
ANKRD20A3             0.177   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.177   ankyrin repeat domain 20 family, member A2 
ANKRD20A4             0.177   ankyrin repeat domain 20 family, member A4 
ANKRD20A1             0.176   ankyrin repeat domain 20 family, member A1 
ANKRD20A5             0.169   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.169   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD62               0.133   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.133   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.132   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
CCDC144A              0.125   coiled-coil domain containing 144A 
LOC100132733          0.118   PREDICTED: similar to FLJ00310 protein 
POTEA                 0.115   POTE ankyrin domain family, member A isoform 2 [Homo...
LOC100287399          0.112   PREDICTED: hypothetical protein XP_002343353 
POTEB                 0.111   protein expressed in prostate, ovary, testis, and pl...
POTEH                 0.111   ANKRD26-like family C, member 3 
POTEG                 0.111   POTE ankyrin domain family, member G 
LOC653269             0.111   PREDICTED: similar to protein expressed in prostate...
P704P                 0.111   prostate-specific P704P 
POTEE                 0.110   protein expressed in prostate, ovary, testis, and p...
POTEF                 0.110   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.110   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.110   PREDICTED: similar to protein expressed in prostate,...
POTED                 0.108   pote protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press