Guide to the Human Genome
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Name: LOC100133939 Sequence: fasta or formatted (121aa) NCBI GI: 169217530
Description:

PREDICTED: similar to UPF0634 protein KIAA1641

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          5           1
 C cysteine            2.5          3           1
 D aspartate           7.4          9           2
 E glutamate           9.1         11           2
 F phenylalanine       1.7          2           1
 G glycine             2.5          3           1
 H histidine           3.3          4           1
 I isoleucine          5.0          6           2
 K lysine             10.7         13           2
 L leucine             9.9         12           2
 M methionine          5.8          7           2
 N asparagine          1.7          2           1
 P proline             0.0          0           0
 Q glutamine          11.6         14           2
 R arginine            6.6          8           1
 S serine              6.6          8           2
 T threonine           5.8          7           1
 V valine              5.0          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom... 
ANKRD36               0.930   PREDICTED: ankyrin repeat domain 36 
ANKRD36B              0.930   ankyrin repeat domain 36B 
LOC400986             0.893   PREDICTED: protein immuno-reactive with anti-PTH po...
LOC400986             0.860   PREDICTED: protein immuno-reactive with anti-PTH po...
ANKRD26               0.318   ankyrin repeat domain 26 
ANKRD62               0.112   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.112   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.112   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
LOC100132733          0.089   PREDICTED: similar to FLJ00310 protein 
CENPE                 0.079   centromere protein E 
CCDC158               0.075   coiled-coil domain containing 158 
KRT71                 0.051   keratin 71 
LAMB1                 0.051   laminin, beta 1 precursor 
C10orf96              0.051   hypothetical protein LOC374355 
MYH10                 0.051   myosin, heavy polypeptide 10, non-muscle 
KLC1                  0.047   kinesin light chain 1 isoform 3 
KLC1                  0.047   kinesin light chain 1 isoform 2 
KLC1                  0.047   kinesin light chain 1 isoform 1 
FAM184B               0.047   hypothetical protein LOC27146 
DSP                   0.047   desmoplakin isoform II 
DSP                   0.047   desmoplakin isoform I 
LOC727927             0.047   PREDICTED: similar to phosphodiesterase 4D interact...
SMC3                  0.047   structural maintenance of chromosomes 3 
MYH13                 0.047   myosin, heavy polypeptide 13, skeletal muscle [Homo...
DST                   0.047   dystonin isoform 1e precursor 
GOLGA1                0.047   golgin 97 
CCDC144A              0.047   coiled-coil domain containing 144A 
TNIP3                 0.042   TNFAIP3 interacting protein 3 
TNIP3                 0.042   TNFAIP3 interacting protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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