Guide to the Human Genome
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Name: ANKRD18A Sequence: fasta or formatted (1415aa) NCBI GI: 239755047
Description:

PREDICTED: ankyrin repeat domain 18A

Referenced in:

Ankyrin Family

Other entries for this name:
alt mRNA [1415aa] PREDICTED: ankyrin repeat domain 18A
alt prot [1002aa] PREDICTED: ankyrin repeat domain 18A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3        104           4
 C cysteine            2.0         28           2
 D aspartate           4.5         64           2
 E glutamate          10.5        148           3
 F phenylalanine       2.4         34           2
 G glycine             4.2         59           2
 H histidine           3.5         50           2
 I isoleucine          4.2         59           2
 K lysine              8.3        117           3
 L leucine            12.3        174           3
 M methionine          2.5         35           1
 N asparagine          5.2         74           2
 P proline             3.9         55           2
 Q glutamine           5.2         74           2
 R arginine            6.2         88           2
 S serine              6.0         85           2
 T threonine           4.7         67           2
 V valine              4.5         64           2
 W tryptophan          0.6          8           1
 X unknown             0.2          3           1
 Y tyrosine            1.8         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              1.000   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.838   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.809   PREDICTED: ankyrin repeat domain 18B 
ANKRD18A              0.690   PREDICTED: ankyrin repeat domain 18A 
ANKRD18B              0.684   PREDICTED: ankyrin repeat domain 18B 
ANKRD26               0.181   ankyrin repeat domain 26 
ANKRD20A3             0.124   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.124   ankyrin repeat domain 20 family, member A2 
ANKRD20A4             0.123   ankyrin repeat domain 20 family, member A4 
ANKRD20A1             0.123   ankyrin repeat domain 20 family, member A1 
ANKRD20A5             0.118   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.118   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD62               0.093   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.093   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.092   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
CCDC144A              0.088   coiled-coil domain containing 144A 
LOC100132733          0.082   PREDICTED: similar to FLJ00310 protein 
POTEA                 0.080   POTE ankyrin domain family, member A isoform 2 [Homo...
LOC100287399          0.078   PREDICTED: hypothetical protein XP_002343353 
POTEB                 0.078   protein expressed in prostate, ovary, testis, and pl...
POTEH                 0.078   ANKRD26-like family C, member 3 
POTEG                 0.077   POTE ankyrin domain family, member G 
LOC653269             0.077   PREDICTED: similar to protein expressed in prostate...
P704P                 0.077   prostate-specific P704P 
POTEE                 0.077   protein expressed in prostate, ovary, testis, and p...
POTEF                 0.077   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.077   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.077   PREDICTED: similar to protein expressed in prostate,...
ANKRD36               0.076   PREDICTED: ankyrin repeat domain 36 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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