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Search of human proteins with 239747502
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo
sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo ... 634 0.0
gi|239741380 PREDICTED: hypothetical protein XP_002342189 [Homo ... 634 0.0
gi|239752961 PREDICTED: hypothetical protein [Homo sapiens] 435 e-122
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 35 0.11
gi|103472003 forkhead box O4 [Homo sapiens] 33 0.41
gi|6005920 thyrotropin-releasing hormone [Homo sapiens] 31 1.6
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 31 1.6
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 31 1.6
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 31 1.6
gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo ... 30 2.0
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 30 2.0
gi|29725607 smooth muscle cell associated protein-1 isoform 2 [H... 30 2.0
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 30 2.7
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 30 2.7
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 30 2.7
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 30 2.7
gi|13899257 transmembrane and ubiquitin-like domain containing 1... 30 2.7
gi|209862889 transmembrane and ubiquitin-like domain containing ... 30 2.7
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 30 2.7
gi|148747574 hypothetical protein LOC51030 [Homo sapiens] 30 2.7
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 30 2.7
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 30 2.7
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 3.5
gi|4502341 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4 [... 30 3.5
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 30 3.5
gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapi... 30 3.5
gi|205277364 hypothetical protein LOC201158 isoform 2 [Homo sapi... 30 3.5
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 29 4.5
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 29 4.5
>gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo
sapiens]
Length = 305
Score = 634 bits (1636), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD 60
MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD
Sbjct: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD 60
Query: 61 LKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGL 120
LKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGL
Sbjct: 61 LKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGL 120
Query: 121 TWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLR 180
TWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLR
Sbjct: 121 TWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLR 180
Query: 181 CWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEAT 240
CWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEAT
Sbjct: 181 CWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEAT 240
Query: 241 ERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILA 300
ERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILA
Sbjct: 241 ERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILA 300
Query: 301 LPHPS 305
LPHPS
Sbjct: 301 LPHPS 305
>gi|239741380 PREDICTED: hypothetical protein XP_002342189 [Homo
sapiens]
Length = 305
Score = 634 bits (1636), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD 60
MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD
Sbjct: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD 60
Query: 61 LKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGL 120
LKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGL
Sbjct: 61 LKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGL 120
Query: 121 TWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLR 180
TWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLR
Sbjct: 121 TWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLR 180
Query: 181 CWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEAT 240
CWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEAT
Sbjct: 181 CWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEAT 240
Query: 241 ERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILA 300
ERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILA
Sbjct: 241 ERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILA 300
Query: 301 LPHPS 305
LPHPS
Sbjct: 301 LPHPS 305
>gi|239752961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 366
Score = 435 bits (1119), Expect = e-122
Identities = 216/240 (90%), Positives = 221/240 (92%), Gaps = 3/240 (1%)
Query: 66 RNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGLTWAHL 125
RN R ++P + W+ + Q R GPEGFAFWLWEVEDPAEEMFLAGLTWAHL
Sbjct: 130 RNLTRWEKPWEP--WVAAFKPWVNSQGLRP-GPEGFAFWLWEVEDPAEEMFLAGLTWAHL 186
Query: 126 SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP 185
SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP
Sbjct: 187 SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP 246
Query: 186 TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE 245
TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE
Sbjct: 247 TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE 306
Query: 246 ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS 305
ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS
Sbjct: 307 ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS 366
Score = 157 bits (397), Expect = 1e-38
Identities = 74/78 (94%), Positives = 75/78 (96%)
Query: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD 60
MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLV GRQHNRPLVGD
Sbjct: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVRGRQHNRPLVGD 60
Query: 61 LKVGCRNQLRLDEPGQSL 78
LKVGCRNQLRLDEP +L
Sbjct: 61 LKVGCRNQLRLDEPAPAL 78
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 34.7 bits (78), Expect = 0.11
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 144 PAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLPTQSPGPPGSP 195
P +LL+ + L FLL F L P+ LP F+ +LLP+ SP SP
Sbjct: 133 PLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSSSSSP 184
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 34.7 bits (78), Expect = 0.11
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 144 PAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLPTQSPGPPGSP 195
P +LL+ + L FLL F L P+ LP F+ +LLP+ SP SP
Sbjct: 133 PLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSSSSSP 184
>gi|103472003 forkhead box O4 [Homo sapiens]
Length = 505
Score = 32.7 bits (73), Expect = 0.41
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 183 LLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATER 242
LLP++ P P G P+P G TG K G R AW N ++ + +A E
Sbjct: 68 LLPSRLPEPAGGPQP-GILGAVTGPRKGGSRRNAW----------GNQSYAELISQAIES 116
Query: 243 HDEERGAVPVLY 254
E+R + +Y
Sbjct: 117 APEKRLTLAQIY 128
>gi|6005920 thyrotropin-releasing hormone [Homo sapiens]
Length = 242
Score = 30.8 bits (68), Expect = 1.6
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 68 QLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGLTWAHLSS 127
Q + PG+ W+ QH +R A P+ W E E+ E L H
Sbjct: 131 QHKRQHPGRRSPWLAYAVPKRQHPGRRLADPKAQRSWEEEEEEEEREEDLMPEKRQH--P 188
Query: 128 SSQASGAASVPLASCAPAVLLISVTPTLPRLEGS 161
+A G P + A LL+ + L R +G+
Sbjct: 189 GKRALGGPCGPQGAYGQAGLLLGLLDDLSRSQGA 222
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 30.8 bits (68), Expect = 1.6
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 188 SPGPPGSPEPRGAEPGATGL 207
SPGPPGSP PRG PG G+
Sbjct: 1728 SPGPPGSPGPRG-PPGHLGV 1746
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 30.8 bits (68), Expect = 1.6
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 189 PGPPGSPEPRGAEPGATGLD 208
PGPPG P PRG PG TG D
Sbjct: 197 PGPPGPPGPRG-PPGDTGKD 215
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 30.8 bits (68), Expect = 1.6
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 189 PGPPGSPEPRGAEPGATGLD 208
PGPPG P PRG PG TG D
Sbjct: 197 PGPPGPPGPRG-PPGDTGKD 215
>gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo
sapiens]
Length = 302
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 122 WAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLL--------RKSFTLAPM 173
W S + A+G +VP+ + APA L+ L L G LL R+ + AP
Sbjct: 38 WMASSGPTWATGPLAVPIPAPAPAALIGGSQKVLVILVGLLLLGIDIVILSRERLSKAPP 97
Query: 174 ---ALPRFLRCWLLPTQSPGPPGS 194
AL L LL Q PG P S
Sbjct: 98 TPGALSSPLPQLLLAEQEPGTPSS 121
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
Query: 189 PGPPGSPEPRG-----AEPGATGL 207
PGPPG P P+G EPGA GL
Sbjct: 841 PGPPGPPGPKGDPGPVGEPGAMGL 864
>gi|29725607 smooth muscle cell associated protein-1 isoform 2 [Homo
sapiens]
Length = 944
Score = 30.4 bits (67), Expect = 2.0
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 192 PGSPEPRGAEPGATGLDKWGKE 213
PG+PEPR A PGA+ +++ KE
Sbjct: 6 PGTPEPRPATPGASSVEQLRKE 27
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 162 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 193
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 162 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 193
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 162 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 193
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 162 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 193
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|13899257 transmembrane and ubiquitin-like domain containing 1
isoform 1 [Homo sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 159 EGSFLLRKSFTLAPMALPR--FLRCWLLPTQSPGPPGSPEPRGAEPGATGLD 208
+G L + TL + LP L C + + GPP P P G+EPG +GL+
Sbjct: 145 QGQLLGDDTQTLGSLHLPPNCVLHCHV--STRVGPPNPPCPPGSEPGPSGLE 194
>gi|209862889 transmembrane and ubiquitin-like domain containing 1
isoform 2 [Homo sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 159 EGSFLLRKSFTLAPMALPR--FLRCWLLPTQSPGPPGSPEPRGAEPGATGLD 208
+G L + TL + LP L C + + GPP P P G+EPG +GL+
Sbjct: 145 QGQLLGDDTQTLGSLHLPPNCVLHCHV--STRVGPPNPPCPPGSEPGPSGLE 194
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 189 PGPPGSPEPRG--AEPGATGLDKWGKERLAWSFGVRAVFKFSNM 230
PGPPG P PRG PG G GK L G FS M
Sbjct: 79 PGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRM 122
Score = 28.9 bits (63), Expect = 5.9
Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 190 GPPGSPEPRGAEPGATG 206
GPPG P PRG EPGA G
Sbjct: 255 GPPGVPGPRG-EPGAVG 270
>gi|148747574 hypothetical protein LOC51030 [Homo sapiens]
Length = 205
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 57 LVGDLKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDP 111
+ G L VG R +DE G+S W+ + K ++K + E FWL + P
Sbjct: 82 VTGRLMVGLRWWNHIDEDGKS-HWVFESRKESSQENKTVSEAESRIFWLGLIACP 135
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 2 PHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITP-LQDLLVT 49
P R P PD P PAF + + P K P I P LQDL T
Sbjct: 780 PGRSPEPDGPAPAFLRQESFTKEPASGPPAPGKPPHISSHPLLQDLAAT 828
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 2 PHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITP-LQDLLVT 49
P R P PD P PAF + + P K P I P LQDL T
Sbjct: 850 PGRSPEPDGPAPAFLRQESFTKEPASGPPAPGKPPHISSHPLLQDLAAT 898
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 29.6 bits (65), Expect = 3.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 8/30 (26%)
Query: 185 PTQSPGPPGSPEPRG--------AEPGATG 206
P PGPPG+P P+G EPGA+G
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEPGEPGASG 215
>gi|4502341 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4
[Homo sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 3.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 7 WPDV--PFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLV 48
WP PFP ++ GTG+++ + + R + PL+D+ V
Sbjct: 251 WPHTWGPFPPYASGTGYVLSASAVQLILKVASRAPLLPLEDVFV 294
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 29.6 bits (65), Expect = 3.5
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 183 LLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLA-------------WSFGVRAVFKFSN 229
LLP P PP SP G PGA+G E A W FG+ ++ +
Sbjct: 34 LLPP--PLPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEEARRLEQRWGFGLEELYGLAL 91
Query: 230 MPWSTMNKEATERHDEERGAVPVLYHSVFPYP-TPKTCNFQGFGNI 274
+ + +A EE+ + L+ V P P TC GF ++
Sbjct: 92 RFFKEKDGKAFHPTYEEKLKLVALHKQVLMGPYNPDTCPEVGFFDV 137
>gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo
sapiens]
Length = 276
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 57 LVGDLKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWL 105
+ G L VG R +DE G+S W+ + K ++K + E FWL
Sbjct: 82 VTGRLMVGLRWWNHIDEDGKS-HWVFESRKESSQENKTVSEAESRIFWL 129
>gi|205277364 hypothetical protein LOC201158 isoform 2 [Homo
sapiens]
Length = 203
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 57 LVGDLKVGCRNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWL 105
+ G L VG R +DE G+S W+ + K ++K + E FWL
Sbjct: 82 VTGRLMVGLRWWNHIDEDGKS-HWVFESRKESSQENKTVSEAESRIFWL 129
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 29.3 bits (64), Expect = 4.5
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 183 LLPTQSPGPPGSPEPRG----AEPGATGLDKWGKERLAW 217
L P PGPPG P P G + G+ +E LAW
Sbjct: 156 LTPLAPPGPPGPPRPPGLCDDSPTSCFGVGSLQEEGLAW 194
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 29.3 bits (64), Expect = 4.5
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 128 SSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLPTQ 187
SS +S ++ LA A A L P P L + F +LP T+
Sbjct: 6789 SSSSSSSSDNELAPFARAKSL----PPSPVTHSPLLHPRGFLRPSASLPEEAEASERSTE 6844
Query: 188 SPGPPGSPEPRGAEPGATG 206
+P PP SPE G P A G
Sbjct: 6845 APAPPASPEGAG-PPAAQG 6862
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,585,407
Number of Sequences: 37866
Number of extensions: 768272
Number of successful extensions: 4584
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 4413
Number of HSP's gapped (non-prelim): 224
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.