Guide to the Human Genome
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Name: FAM18B Sequence: fasta or formatted (205aa) NCBI GI: 148747574
Description:

hypothetical protein LOC51030

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         12           1
 C cysteine            2.4          5           1
 D aspartate           4.9         10           2
 E glutamate           4.9         10           3
 F phenylalanine       7.3         15           2
 G glycine             4.9         10           1
 H histidine           2.4          5           1
 I isoleucine          5.9         12           2
 K lysine              4.9         10           1
 L leucine            10.2         21           3
 M methionine          2.4          5           1
 N asparagine          3.4          7           1
 P proline             1.5          3           1
 Q glutamine           3.4          7           2
 R arginine            6.3         13           1
 S serine              9.8         20           3
 T threonine           5.4         11           2
 V valine              8.8         18           2
 W tryptophan          3.4          7           2
 Y tyrosine            2.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51030 
FAM18B2               0.929   hypothetical protein LOC201158 isoform 2 
FAM18B2               0.715   hypothetical protein LOC201158 isoform 1 
FAM18A                0.542   hypothetical protein LOC780776 
LOC100291430          0.013   PREDICTED: hypothetical protein XP_002347667 
LOC100287460          0.013   PREDICTED: hypothetical protein XP_002342189 
OR9Q2                 0.008   olfactory receptor, family 9, subfamily Q, member 2 ...
ASTN2                 0.008   astrotactin 2 isoform c 
ASTN2                 0.008   astrotactin 2 isoform b 
ASTN2                 0.008   astrotactin 2 isoform a 
LOC100291924          0.008   PREDICTED: similar to astrotactin 2 
CAPN7                 0.008   calpain 7 
KIAA0774              0.008   hypothetical protein LOC23281 isoform b 
KIAA0774              0.008   hypothetical protein LOC23281 isoform a 
SLC44A2               0.005   solute carrier family 44, member 2 isoform 1 
SLC44A2               0.005   solute carrier family 44, member 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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