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Search of human proteins with 239747430
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens] 541 e-154
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens] 541 e-154
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ... 515 e-146
gi|5032161 elongin C [Homo sapiens] 176 2e-44
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens] 160 8e-40
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens] 160 8e-40
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens] 160 8e-40
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ... 92 4e-19
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ... 92 4e-19
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens] 86 3e-17
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens] 71 1e-12
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ... 34 0.12
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ... 34 0.12
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro... 33 0.26
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro... 33 0.26
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro... 33 0.26
gi|15082252 zinc finger protein 670 [Homo sapiens] 32 0.58
gi|10337595 protein phosphatase 1A isoform 1 [Homo sapiens] 31 1.3
gi|29557855 protein phosphatase 1A isoform 2 [Homo sapiens] 31 1.3
gi|193211600 protein phosphatase 1A isoform 3 [Homo sapiens] 31 1.3
gi|169203012 PREDICTED: similar to hCG1820409 [Homo sapiens] 30 2.9
gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens] 30 2.9
gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens] 30 2.9
gi|6912660 sirtuin 3 isoform a [Homo sapiens] 30 2.9
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 29 3.8
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 29 3.8
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 29 3.8
gi|51093381 leptin receptor isoform 3 [Homo sapiens] 29 4.9
gi|51093379 leptin receptor isoform 2 [Homo sapiens] 29 4.9
gi|40254464 leptin receptor isoform 1 [Homo sapiens] 29 4.9
>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 541 bits (1395), Expect = e-154
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP
Sbjct: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
Query: 61 SFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRDDIQAVG 120
SFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRDDIQAVG
Sbjct: 61 SFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRDDIQAVG 120
Query: 121 NHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRKKTYGDCEGPDAMYVKLIS 180
NHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRKKTYGDCEGPDAMYVKLIS
Sbjct: 121 NHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRKKTYGDCEGPDAMYVKLIS 180
Query: 181 SSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVTYKGHY 240
SSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVTYKGHY
Sbjct: 181 SSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVTYKGHY 240
Query: 241 TNSSTEILKFPAAPQIAPELLMTVNFLDC 269
TNSSTEILKFPAAPQIAPELLMTVNFLDC
Sbjct: 241 TNSSTEILKFPAAPQIAPELLMTVNFLDC 269
>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 541 bits (1393), Expect = e-154
Identities = 268/269 (99%), Positives = 269/269 (100%)
Query: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP
Sbjct: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
Query: 61 SFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRDDIQAVG 120
SFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRDDIQAVG
Sbjct: 61 SFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRDDIQAVG 120
Query: 121 NHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRKKTYGDCEGPDAMYVKLIS 180
NHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRKKTYGDCEGPDAMYVKLIS
Sbjct: 121 NHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRKKTYGDCEGPDAMYVKLIS 180
Query: 181 SSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVTYKGHY 240
SSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVTYKGHY
Sbjct: 181 SSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVTYKGHY 240
Query: 241 TNSSTEILKFPAAPQIAPELLMTVNFLDC 269
TNSSTEILKFPAAPQ+APELLMTVNFLDC
Sbjct: 241 TNSSTEILKFPAAPQLAPELLMTVNFLDC 269
>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
sapiens]
Length = 287
Score = 515 bits (1327), Expect = e-146
Identities = 262/287 (91%), Positives = 263/287 (91%), Gaps = 18/287 (6%)
Query: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP
Sbjct: 1 MGKKVVHWEMVSASKESLPGTMNLPDVTEAVLLFSWKMKLSFVLMSPEGLKASAEVSDTP 60
Query: 61 SFELIKCGSAYECSKLVQTRTAVTGGE------------------LPRAYKRQSGIGCES 102
SFELIKCGSAYECSKLVQTRTAVTGG+ AYKRQSGIGCES
Sbjct: 61 SFELIKCGSAYECSKLVQTRTAVTGGKGFAGGEGRGWEGGVRRVAKGEAYKRQSGIGCES 120
Query: 103 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLESRGAALLEFITGSDGRK 162
GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLE RGAALLEFI GSDGRK
Sbjct: 121 GHFSCRRGGGRDDIQAVGNHLVGSKPNDDPHLRNLAICEQDLERRGAALLEFIAGSDGRK 180
Query: 163 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 222
KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI
Sbjct: 181 KTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREI 240
Query: 223 SSHVLSKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269
SSHVLSKVCMYVTY GHYTNSSTEILKFPAAPQIAPELLMTVNFLDC
Sbjct: 241 SSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287
>gi|5032161 elongin C [Homo sapiens]
Length = 112
Score = 176 bits (446), Expect = 2e-44
Identities = 87/111 (78%), Positives = 95/111 (85%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
DG +KTYG CEGPDAMYVKLISS GH+ IVKRE+A+TS TIKAMLSGPGQ AENE +EV+
Sbjct: 2 DGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVN 61
Query: 219 FREISSHVLSKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269
FREI SHVLSKVCMY TYK YTNSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 160 bits (406), Expect = 8e-40
Identities = 83/114 (72%), Positives = 89/114 (78%), Gaps = 3/114 (2%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE EV
Sbjct: 2 DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
Query: 219 FREISSHVLSKV---CMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269
FREI SHVLSKV CMY YK Y NSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 160 bits (406), Expect = 8e-40
Identities = 83/114 (72%), Positives = 89/114 (78%), Gaps = 3/114 (2%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE EV
Sbjct: 2 DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
Query: 219 FREISSHVLSKV---CMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269
FREI SHVLSKV CMY YK Y NSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 160 bits (406), Expect = 8e-40
Identities = 83/114 (72%), Positives = 89/114 (78%), Gaps = 3/114 (2%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE EV
Sbjct: 2 DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
Query: 219 FREISSHVLSKV---CMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269
FREI SHVLSKV CMY YK Y NSSTEI +FP AP+IA ELLM NFLDC
Sbjct: 62 FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
sapiens]
Length = 120
Score = 92.4 bits (228), Expect = 4e-19
Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
Query: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 268
FREI +K C+Y TYK HY+NSSTEI +F A E+LM +FLD
Sbjct: 62 FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
sapiens]
Length = 120
Score = 92.4 bits (228), Expect = 4e-19
Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
Query: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 268
FREI +K C+Y TYK HY+NSSTEI +F A E+LM +FLD
Sbjct: 62 FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
Length = 181
Score = 86.3 bits (212), Expect = 3e-17
Identities = 54/112 (48%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
Query: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFL 267
FREI +K C+Y T K HY+NSSTEI +F A E+LM +FL
Sbjct: 62 FREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF----LTALEVLMIQHFL 109
>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
Length = 101
Score = 70.9 bits (172), Expect = 1e-12
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 159 DGRKKTYGDCEGPDAMYVKLISSSGH----KVIVKREYAVTSITIKAMLSGPGQLAENEI 214
D +KTY CE + M S+G+ + +VK A TS T+K +L+GP AE
Sbjct: 2 DEEEKTYSVCESSNTMM-----SNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
Query: 215 SEVSFREISSHVLSKVCMYVTYKGHYTNSSTEILKFP 251
EV+ R+ S VL K C Y TY HYT SSTEI KFP
Sbjct: 57 IEVNLRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93
>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
sapiens]
Length = 163
Score = 34.3 bits (77), Expect = 0.12
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235
+KL SS G V E A S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 236 Y 236
+
Sbjct: 64 H 64
>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
sapiens]
Length = 160
Score = 34.3 bits (77), Expect = 0.12
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235
+KL SS G V E A S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 236 Y 236
+
Sbjct: 64 H 64
>gi|239755758 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 33.1 bits (74), Expect = 0.26
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
Query: 236 Y 236
+
Sbjct: 64 H 64
>gi|239750260 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 33.1 bits (74), Expect = 0.26
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
Query: 236 Y 236
+
Sbjct: 64 H 64
>gi|239744568 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 33.1 bits (74), Expect = 0.26
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
Query: 236 Y 236
+
Sbjct: 64 H 64
>gi|15082252 zinc finger protein 670 [Homo sapiens]
Length = 389
Score = 32.0 bits (71), Expect = 0.58
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 49 GLKASAEVSDTPSFELIKCGSAYECSKLVQTRTAVTGGELP-------RAYKRQSGIGCE 101
G+ + P +E IKCG A+ CS++++ GE P +A+K S + CE
Sbjct: 269 GIHERTHTGEKP-YECIKCGKAFRCSRVLRVHERTHSGEKPYECKQCGKAFKYSSNL-CE 326
>gi|10337595 protein phosphatase 1A isoform 1 [Homo sapiens]
Length = 382
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 227 LSKVCMYVT----YKGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 268
L KVC V YKG N S ++ FP AP+++PE + LD
Sbjct: 264 LEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELD 309
>gi|29557855 protein phosphatase 1A isoform 2 [Homo sapiens]
Length = 324
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 227 LSKVCMYVT----YKGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 268
L KVC V YKG N S ++ FP AP+++PE + LD
Sbjct: 264 LEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELD 309
>gi|193211600 protein phosphatase 1A isoform 3 [Homo sapiens]
Length = 455
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 227 LSKVCMYVT----YKGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 268
L KVC V YKG N S ++ FP AP+++PE + LD
Sbjct: 337 LEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELD 382
>gi|169203012 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 339
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 60 PSFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRD 114
P+F + G E + Q TA+ G LP R+ G G +G GGGRD
Sbjct: 73 PNFSAARRGGGGEDEEKAQQPTALILGSLPPRLPRRGGRGDSAG------GGGRD 121
>gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 60 PSFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRD 114
P+F + G E + Q TA+ G LP R+ G G +G GGGRD
Sbjct: 73 PNFSAARRGGGGEDEEKAQQPTALILGSLPPRLPRRGGRGDSAG------GGGRD 121
>gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 60 PSFELIKCGSAYECSKLVQTRTAVTGGELPRAYKRQSGIGCESGHFSCRRGGGRD 114
P+F + G E + Q TA+ G LP R+ G G +G GGGRD
Sbjct: 73 PNFSAARRGGGGEDEEKAQQPTALILGSLPPRLPRRGGRGDSAG------GGGRD 121
>gi|6912660 sirtuin 3 isoform a [Homo sapiens]
Length = 399
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 87 ELPRAYKRQSGIGCESGHFSCRRGGGRDDIQAVG-NHLVGSKPNDDPHLRNLAICEQDLE 145
E+PRA++RQ S FS +GG R +VG + +VGS + D +L + +
Sbjct: 74 EVPRAFRRQPRAAAPSFFFSSIKGGRRSISFSVGASSVVGSGGSSDKGKLSLQDVAELIR 133
Query: 146 SRGAALLEFITGS 158
+R + + G+
Sbjct: 134 ARACQRVVVMVGA 146
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 95 QSGIGCESGHFSCRRGGGR--DDIQAVGNHLVGSKPNDDPHLRNL-----AICEQDLESR 147
+SG +SG + G DD+QA+ L K D L NL C+Q +E +
Sbjct: 157 KSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVK 216
Query: 148 GAALLEFITGSDGRKKTYGDCEGPDAMYVKLISSSG 183
A E T S +K D +VK+ S G
Sbjct: 217 NAKSEEEQTSSSSKK---------DKTHVKMESEGG 243
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 95 QSGIGCESGHFSCRRGGGR--DDIQAVGNHLVGSKPNDDPHLRNL-----AICEQDLESR 147
+SG +SG + G DD+QA+ L K D L NL C+Q +E +
Sbjct: 157 KSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVK 216
Query: 148 GAALLEFITGSDGRKKTYGDCEGPDAMYVKLISSSG 183
A E T S +K D +VK+ S G
Sbjct: 217 NAKSEEEQTSSSSKK---------DKTHVKMESEGG 243
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 3.8
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 95 QSGIGCESGHFSCRRGGGR--DDIQAVGNHLVGSKPNDDPHLRNL-----AICEQDLESR 147
+SG +SG + G DD+QA+ L K D L NL C+Q +E +
Sbjct: 157 KSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVK 216
Query: 148 GAALLEFITGSDGRKKTYGDCEGPDAMYVKLISSSG 183
A E T S +K D +VK+ S G
Sbjct: 217 NAKSEEEQTSSSSKK---------DKTHVKMESEGG 243
>gi|51093381 leptin receptor isoform 3 [Homo sapiens]
Length = 958
Score = 28.9 bits (63), Expect = 4.9
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 34 FSWKMKLSFVLMSPEGLKASAEVSDTPSFELIKCG-SAYECSK-LVQTRTAVTGGELPRA 91
+++K+ L +VL PE L+ S V SF+++ C S +EC + LV TA L
Sbjct: 155 YNYKVHLLYVL--PEVLEDSPLVPQKGSFQMVHCNCSVHECCECLVPVPTAKLNDTLLMC 212
Query: 92 YKRQSG 97
K SG
Sbjct: 213 LKITSG 218
>gi|51093379 leptin receptor isoform 2 [Homo sapiens]
Length = 896
Score = 28.9 bits (63), Expect = 4.9
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 34 FSWKMKLSFVLMSPEGLKASAEVSDTPSFELIKCG-SAYECSK-LVQTRTAVTGGELPRA 91
+++K+ L +VL PE L+ S V SF+++ C S +EC + LV TA L
Sbjct: 155 YNYKVHLLYVL--PEVLEDSPLVPQKGSFQMVHCNCSVHECCECLVPVPTAKLNDTLLMC 212
Query: 92 YKRQSG 97
K SG
Sbjct: 213 LKITSG 218
>gi|40254464 leptin receptor isoform 1 [Homo sapiens]
Length = 1165
Score = 28.9 bits (63), Expect = 4.9
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 34 FSWKMKLSFVLMSPEGLKASAEVSDTPSFELIKCG-SAYECSK-LVQTRTAVTGGELPRA 91
+++K+ L +VL PE L+ S V SF+++ C S +EC + LV TA L
Sbjct: 155 YNYKVHLLYVL--PEVLEDSPLVPQKGSFQMVHCNCSVHECCECLVPVPTAKLNDTLLMC 212
Query: 92 YKRQSG 97
K SG
Sbjct: 213 LKITSG 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,355,207
Number of Sequences: 37866
Number of extensions: 438145
Number of successful extensions: 1243
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 38
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.