Guide to the Human Genome
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Name: LOC649330 Sequence: fasta or formatted (293aa) NCBI GI: 226052117
Description:

heterogeneous nuclear ribonucleoprotein C-like

Not currently referenced in the text

Other entries for this name:
alt mRNA {293aa} PREDICTED: heterogeneous nuclear ribonucleoprotein C-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         22           2
 C cysteine            1.0          3           1
 D aspartate           9.2         27           3
 E glutamate           8.2         24           3
 F phenylalanine       2.4          7           1
 G glycine             8.9         26           2
 H histidine           1.4          4           1
 I isoleucine          3.8         11           1
 K lysine             10.6         31           2
 L leucine             5.5         16           2
 M methionine          2.4          7           1
 N asparagine          5.8         17           1
 P proline             3.1          9           5
 Q glutamine           4.4         13           1
 R arginine            4.8         14           2
 S serine              9.9         29           4
 T threonine           2.0          6           1
 V valine              6.8         20           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein C-like [Hom... 
LOC649330             1.000   PREDICTED: heterogeneous nuclear ribonucleoprotein ...
LOC652665             1.000   PREDICTED: similar to heterogeneous nuclear ribonuc...
HNRNPCL1              0.919   heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...
LOC440563             0.905   heterogeneous nuclear ribonucleoprotein C-like [Hom...
HNRNPC                0.871   heterogeneous nuclear ribonucleoprotein C isoform b...
HNRNPC                0.871   heterogeneous nuclear ribonucleoprotein C isoform b...
HNRNPC                0.855   heterogeneous nuclear ribonucleoprotein C isoform a...
HNRNPC                0.855   heterogeneous nuclear ribonucleoprotein C isoform a...
RALYL                 0.381   RALY RNA binding protein-like isoform 2 
RALYL                 0.381   RALY RNA binding protein-like isoform 2 
RALYL                 0.381   RALY RNA binding protein-like isoform 2 
RALYL                 0.381   RALY RNA binding protein-like isoform 1 
RALY                  0.316   RNA binding protein (autoantigenic, hnRNP-associated ...
RALY                  0.287   RNA binding protein (autoantigenic, hnRNP-associated...
RBM14                 0.050   RNA binding motif protein 14 
LOC100288788          0.045   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.045   PREDICTED: hypothetical protein XP_002343863 
SFRS5                 0.045   splicing factor, arginine/serine-rich 5 
SFRS5                 0.045   splicing factor, arginine/serine-rich 5 
SFRS4                 0.045   splicing factor, arginine/serine-rich 4 
RBMXL2                0.043   testes-specific heterogenous nuclear ribonucleoprot...
RBMX                  0.041   RNA binding motif protein, X-linked 
RBMXL1                0.041   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.041   RNA binding motif protein, X-linked-like 1 
CYLC2                 0.039   cylicin 2 
HNRNPR                0.036   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.036   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.036   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.036   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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