Guide to the Human Genome
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Name: LOC652636 Sequence: fasta or formatted (101aa) NCBI GI: 113430993
Description:

PREDICTED: similar to elongin C

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          4           1
 C cysteine            3.0          3           1
 D aspartate           3.0          3           1
 E glutamate           7.9          8           3
 F phenylalanine       5.9          6           1
 G glycine             3.0          3           1
 H histidine           3.0          3           1
 I isoleucine          4.0          4           1
 K lysine              7.9          8           1
 L leucine             8.9          9           2
 M methionine          4.0          4           2
 N asparagine          5.0          5           1
 P proline             6.9          7           1
 Q glutamine           3.0          3           1
 R arginine            2.0          2           1
 S serine              8.9          9           2
 T threonine           9.9         10           1
 V valine              4.0          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to elongin C 
TCEB1                 0.364   elongin C 
LOC100132973          0.283   PREDICTED: similar to elongin C 
LOC100132973          0.283   PREDICTED: similar to elongin C 
LOC100132973          0.283   PREDICTED: similar to elongin C 
LOC100293395          0.246   PREDICTED: similar to elongin C 
LOC727788             0.246   PREDICTED: similar to elongin C 
LOC100287778          0.246   PREDICTED: hypothetical protein XP_002342145 
LOC100290177          0.203   PREDICTED: hypothetical protein XP_002347928 
LOC100287483          0.203   PREDICTED: hypothetical protein XP_002344195 
LOC100292879          0.187   PREDICTED: similar to fos39347_1 
FLNB                  0.011   filamin B, beta (actin binding protein 278) 
PLAGL2                0.005   pleiomorphic adenoma gene-like 2 
MUC5AC                0.005   mucin 5AC 
LOC100293485          0.005   PREDICTED: hypothetical protein 
MUC5B                 0.005   mucin 5, subtype B, tracheobronchial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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