Guide to the Human Genome
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Name: LOC100292879 Sequence: fasta or formatted (181aa) NCBI GI: 239757103
Description:

PREDICTED: similar to fos39347_1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         15           1
 C cysteine            3.9          7           1
 D aspartate           5.0          9           4
 E glutamate           6.1         11           2
 F phenylalanine       3.9          7           1
 G glycine             9.4         17           2
 H histidine           3.3          6           1
 I isoleucine          4.4          8           1
 K lysine              3.9          7           1
 L leucine             6.6         12           2
 M methionine          1.7          3           1
 N asparagine          3.9          7           1
 P proline             5.5         10           2
 Q glutamine           4.4          8           2
 R arginine            7.2         13           2
 S serine              9.4         17           2
 T threonine           5.5         10           1
 V valine              5.0          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to fos39347_1 
LOC100290177          0.550   PREDICTED: hypothetical protein XP_002347928 
LOC100287483          0.550   PREDICTED: hypothetical protein XP_002344195 
TCEB1                 0.287   elongin C 
LOC100132973          0.252   PREDICTED: similar to elongin C 
LOC100132973          0.252   PREDICTED: similar to elongin C 
LOC100132973          0.252   PREDICTED: similar to elongin C 
LOC100293395          0.175   PREDICTED: similar to elongin C 
LOC727788             0.175   PREDICTED: similar to elongin C 
LOC100287778          0.169   PREDICTED: hypothetical protein XP_002342145 
LOC652636             0.100   PREDICTED: similar to elongin C 
FBXO34                0.020   F-box only protein 34 
FBXO34                0.020   F-box only protein 34 
PARP15                0.011   poly (ADP-ribose) polymerase family, member 15 isofo...
PARP15                0.011   poly (ADP-ribose) polymerase family, member 15 isof...
WT1                   0.009   Wilms tumor 1 isoform D 
WT1                   0.009   Wilms tumor 1 isoform B 
MCF2L                 0.009   MCF.2 cell line derived transforming sequence-like ...
PCP2                  0.009   Purkinje cell protein 2 
PTPN6                 0.009   protein tyrosine phosphatase, non-receptor type 6 is...
SCHIP1                0.006   schwannomin interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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