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Search of human proteins with 239747371
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747371 PREDICTED: hypothetical protein XP_002346571 [Homo
sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752841 PREDICTED: hypothetical protein [Homo sapiens] 198 7e-52
gi|239747371 PREDICTED: hypothetical protein XP_002346571 [Homo ... 198 7e-52
gi|239741196 PREDICTED: hypothetical protein XP_002342133 [Homo ... 198 7e-52
gi|40018612 MyoD family inhibitor domain containing protein isof... 37 0.003
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens] 36 0.006
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ... 36 0.006
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ... 36 0.006
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 35 0.010
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.017
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ... 34 0.022
gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo ... 34 0.022
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 34 0.029
gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo ... 33 0.037
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 33 0.037
gi|28875797 small protein rich in arginine and glycine [Homo sap... 33 0.049
gi|239756776 PREDICTED: similar to transformation related protei... 33 0.064
gi|239751263 PREDICTED: hypothetical protein XP_002347773 [Homo ... 33 0.064
gi|239745756 PREDICTED: hypothetical protein XP_002343546 [Homo ... 33 0.064
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 33 0.064
gi|13129006 nucleolar protein GU2 [Homo sapiens] 33 0.064
gi|188497758 ubiquitin associated protein 2-like isoform a [Homo... 33 0.064
gi|188497756 ubiquitin associated protein 2-like isoform b [Homo... 33 0.064
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 33 0.064
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 32 0.083
gi|24497504 forkhead box A2 isoform 2 [Homo sapiens] 32 0.11
>gi|239752841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 99
Score = 198 bits (504), Expect = 7e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS
Sbjct: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
Query: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
>gi|239747371 PREDICTED: hypothetical protein XP_002346571 [Homo
sapiens]
Length = 99
Score = 198 bits (504), Expect = 7e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS
Sbjct: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
Query: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
>gi|239741196 PREDICTED: hypothetical protein XP_002342133 [Homo
sapiens]
Length = 99
Score = 198 bits (504), Expect = 7e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS
Sbjct: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
Query: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
>gi|40018612 MyoD family inhibitor domain containing protein
isoform p40 [Homo sapiens]
Length = 355
Score = 37.0 bits (84), Expect = 0.003
Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 6 VARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
VA ++ G +RR +AG GRA G V P GR+ RR F R RRRRR
Sbjct: 12 VAATAASGLSRR----EAG----GRA--GAAAAVVRPPGRKCGRCRRLANFPGRKRRRRR 61
Query: 66 -----GGRGRCSGAL-SLAVCPGAPEPAFYTGRRRRR 96
G C A+ SL P +P GRR RR
Sbjct: 62 RKGLGATTGGCGEAVSSLHPAPHSPSSVRPAGRRARR 98
>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
Length = 462
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 15 ARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGA 74
A RRR++ ++R GR + G GGA G G+ A G A + + R G GR S A
Sbjct: 291 AAERRRRRGALRRGGRRRAGAEGGAGGADGQGAGPG--AAESGALTASRSPGPGGRLSRA 348
Query: 75 LSLAVCPGAPEPAFYTGRRRR 95
S +V F+ RRRR
Sbjct: 349 SSRSV-------EFFLSRRRR 362
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 8 RRSSPGRARRRRRQQAGVQRTGRAQRGRGGG-------------AVGPVGREARAGRRAG 54
RR G RR R++AG + G+G G + GP GR +RA R+
Sbjct: 294 RRRRRGALRRGGRRRAGAEGGAGGADGQGAGPGAAESGALTASRSPGPGGRLSRASSRSV 353
Query: 55 VFRSRSRRRRR 65
F RRR R
Sbjct: 354 EFFLSRRRRAR 364
>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 20 RQQAGVQRTGRAQR---GRGGGAVGPVGREARAGRRA---GVFRSRSRRRRRGGRG 69
+QQ G + G+ R GRG GA+G G RAG R G RS R R GGRG
Sbjct: 170 QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
Length = 236
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 20 RQQAGVQRTGRAQR---GRGGGAVGPVGREARAGRRA---GVFRSRSRRRRRGGRG 69
+QQ G + G+ R GRG GA+G G RAG R G RS R R GGRG
Sbjct: 170 QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
Length = 236
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 20 RQQAGVQRTGRAQR---GRGGGAVGPVGREARAGRRA---GVFRSRSRRRRRGGRG 69
+QQ G + G+ R GRG GA+G G RAG R G RS R R GGRG
Sbjct: 170 QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 14 RARRRRRQQAGVQRTGRAQRGRGG-GAVGPVGREARAGR-RAGVFR---------SRSRR 62
R +R+ R+Q G + RG GG G G GR +R GR R G R +R R
Sbjct: 1649 RPKRKLRKQHGNGKRNWKTRGTGGRGRWGRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRG 1708
Query: 63 RRRGGRGRCSGA 74
R RGGRG GA
Sbjct: 1709 RGRGGRGASRGA 1720
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 13 GRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRR 64
GR R R G GR RGRGGG GR R GR A +R++R R
Sbjct: 1677 GRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRGR-GRGGRGASRGATRAKRAR 1727
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 29 GRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS------------ 76
G A GR G P RE A RR G + R RRR GG G L
Sbjct: 581 GGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAH 640
Query: 77 --LAVCPGAPEPAFYTGRRRR 95
+ V P A P GR R
Sbjct: 641 GHVVVAPAAAAPTAREGRAGR 661
Score = 29.3 bits (64), Expect = 0.70
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 17 RRRRQQAGV--QRTGRAQRGRGGGAV-----------GPVGREARAGRRAGVFRSRSRRR 63
RRR AG R GR + RGGG G GR A R G R RRR
Sbjct: 323 RRRAGHAGSFWLRGGRDRLRRGGGHTKSHLGVVTIVPGRRGRAAGGQERGG----RGRRR 378
Query: 64 RRGGRGRCSGALSLA 78
++G RGR LA
Sbjct: 379 QQGRRGRRQAGPGLA 393
Score = 28.1 bits (61), Expect = 1.6
Identities = 34/115 (29%), Positives = 36/115 (31%), Gaps = 34/115 (29%)
Query: 14 RARRRRRQQAGVQRTGRAQRGRGGG-------------------------------AVGP 42
RA RRR V GR G GGG A
Sbjct: 853 RAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAA 912
Query: 43 VGREARAGR--RAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPA-FYTGRRR 94
G A GR R G + S R R G RGR S + G PA GRRR
Sbjct: 913 QGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRR 967
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 6 VARRSSPGRARRRRRQQAGVQRTGRA--QRGRGGGAVGPVGREARAGRRAGVFRSRSRRR 63
+A + P RA RR+ G RA Q GG V V ARAG GV R RR
Sbjct: 952 LAGGAHPARAALGRRRGGGQAVGARAAHQARLAGGQVDQVVVAARAGDADGV---RGRRP 1008
Query: 64 RR 65
RR
Sbjct: 1009 RR 1010
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 46 EARAGRRAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPAF 88
E RA RR + +R G R SG+ P AP P+F
Sbjct: 35 ENRAARRKTKQGASARLSASGSRSPKSGSSETQEAPSAPRPSF 77
Score = 26.2 bits (56), Expect = 6.0
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 32 QRGRGGGAVGPVGREARAGRRAGVFRSRSRRRR-RGGRGRCSGALSLAVCPGAPEPAFYT 90
+ G GGA G G A G AG R R+RR R GR R GA ++A A
Sbjct: 821 EAGVAGGARG--GGAAAGGPLAGAVVQRMRQRRVRAGRRRV-GARAVAAAGRQGAGAGGG 877
Query: 91 GRRRR 95
GRR R
Sbjct: 878 GRRVR 882
Score = 25.8 bits (55), Expect = 7.8
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 10 SSPGRARRRRRQQAGV-QRTGRAQRGRGGGAVGPVGREARAGRRAG-------VFRSRSR 61
++P R R++ G R R + G GGG GP ++ G AG V + +
Sbjct: 592 AAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAA 651
Query: 62 RRRRGGRGRCSGALSLAVCP----GAP 84
R GR G +++ VCP GAP
Sbjct: 652 PTAREGRAGRHGHVAV-VCPQVAAGAP 677
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 29 GRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS------------ 76
G A GR G P RE A RR G + R RRR GG G L
Sbjct: 581 GGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAH 640
Query: 77 --LAVCPGAPEPAFYTGRRRR 95
+ V P A P GR R
Sbjct: 641 GHVVVAPAAAAPTAREGRAGR 661
Score = 29.3 bits (64), Expect = 0.70
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 17 RRRRQQAGV--QRTGRAQRGRGGGAV-----------GPVGREARAGRRAGVFRSRSRRR 63
RRR AG R GR + RGGG G GR A R G R RRR
Sbjct: 323 RRRAGHAGSFWLRGGRDRLRRGGGHTKSHLGVVTIVPGRRGRAAGGQERGG----RGRRR 378
Query: 64 RRGGRGRCSGALSLA 78
++G RGR LA
Sbjct: 379 QQGRRGRRQAGPGLA 393
Score = 28.1 bits (61), Expect = 1.6
Identities = 34/115 (29%), Positives = 36/115 (31%), Gaps = 34/115 (29%)
Query: 14 RARRRRRQQAGVQRTGRAQRGRGGG-------------------------------AVGP 42
RA RRR V GR G GGG A
Sbjct: 853 RAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAA 912
Query: 43 VGREARAGR--RAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPA-FYTGRRR 94
G A GR R G + S R R G RGR S + G PA GRRR
Sbjct: 913 QGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRR 967
Score = 26.9 bits (58), Expect = 3.5
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 6 VARRSSPGRARRRRRQQAGVQRTGRA--QRGRGGGAVGPVGREARAGRRAGVFRSRSRRR 63
+A + P RA RR+ G RA Q GG V V ARAG GV R RR
Sbjct: 952 LAGGAHPARAALGRRRGGGQAVGARAAHQARLAGGQVDQVVVAARAGDADGV---RGRRP 1008
Query: 64 RR 65
RR
Sbjct: 1009 RR 1010
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 46 EARAGRRAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPAF 88
E RA RR + +R G R SG+ P AP P+F
Sbjct: 35 ENRAARRKTKQGASARLSASGSRSPKSGSSETQEAPSAPRPSF 77
Score = 26.2 bits (56), Expect = 6.0
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 32 QRGRGGGAVGPVGREARAGRRAGVFRSRSRRRR-RGGRGRCSGALSLAVCPGAPEPAFYT 90
+ G GGA G G A G AG R R+RR R GR R GA ++A A
Sbjct: 821 EAGVAGGARG--GGAAAGGPLAGAVVQRMRQRRVRAGRRRV-GARAVAAAGRQGAGAGGG 877
Query: 91 GRRRR 95
GRR R
Sbjct: 878 GRRVR 882
Score = 25.8 bits (55), Expect = 7.8
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 10 SSPGRARRRRRQQAGV-QRTGRAQRGRGGGAVGPVGREARAGRRAG-------VFRSRSR 61
++P R R++ G R R + G GGG GP ++ G AG V + +
Sbjct: 592 AAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAA 651
Query: 62 RRRRGGRGRCSGALSLAVCP----GAP 84
R GR G +++ VCP GAP
Sbjct: 652 PTAREGRAGRHGHVAV-VCPQVAAGAP 677
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 7 ARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVF----RSRSRR 62
AR PGRA R+ R R G GA+ R AGR F ++ + R
Sbjct: 218 ARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPR 277
Query: 63 RRRGGRGRCSGALSLAVCP 81
GG GR GAL A P
Sbjct: 278 APGGGGGRNPGALGRAAPP 296
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 19 RRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGR 70
R +++ R+ + +GRGG A G GR R RR RS + RR GR R
Sbjct: 359 RGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR 410
Score = 26.9 bits (58), Expect = 3.5
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 16/79 (20%)
Query: 14 RARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSG 73
R RRRRR+++ + +RGR R R G RS SR R G G
Sbjct: 387 RRRRRRRRRSRSSASAPRRRGR---------RRPRPAPPRGSSRSLSRARSSSDSGSGRG 437
Query: 74 ALSLAVCPG-APEPAFYTG 91
A PG PEP G
Sbjct: 438 A------PGPGPEPGSERG 450
>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
sapiens]
Length = 321
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 9 RSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGP----VGREARAGRRAGVFRSRSRR-- 62
RS P R + ++G + + RGGG P A A R G RSR +
Sbjct: 119 RSGPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKSRGGGVRSRGGKKI 178
Query: 63 RRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRR 95
RRRG + +GA S P+ A G RRR
Sbjct: 179 RRRGQKAAAAGAKSCGGGGKKPQKARAVGARRR 211
>gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo
sapiens]
Length = 231
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 9 RSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGP----VGREARAGRRAGVFRSRSRR-- 62
RS P R + ++G + + RGGG P A A R G RSR +
Sbjct: 119 RSGPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKSRGGGVRSRGGKKI 178
Query: 63 RRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRR 95
RRRG + +GA S P+ A G RRR
Sbjct: 179 RRRGQKAAAAGAKSCGGGGKKPQKARAVGARRR 211
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 13 GRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSR--------SRRRR 64
GR R R ++ R R GRGGG GP A GR A RS RRR+
Sbjct: 1044 GRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQ 1103
Query: 65 RG 66
RG
Sbjct: 1104 RG 1105
>gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo
sapiens]
Length = 117
Score = 33.5 bits (75), Expect = 0.037
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 1 MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
+R +++A R + R RRRRR++ R Q G G P RE G
Sbjct: 36 LRPVLLAPRQALSRRRRRRRRRRRRHRP-FCQPGNGSAPTVPSVREQNGG--------GG 86
Query: 61 RRRRRGGRGRCSGALSLAVCPGAPEPA 87
+RRR G RC L G+P PA
Sbjct: 87 KRRREQGAERCETHAPL----GSPPPA 109
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 33.5 bits (75), Expect = 0.037
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 24 GVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGA 74
G + R RGRGG G G R +G + R R RGGRG G+
Sbjct: 207 GYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGS 257
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 33.1 bits (74), Expect = 0.049
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 15 ARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVF-RSRSRRRRRG-GRGRCS 72
A R ++ GV+ GR GRGG G +GR GR G+ R R RG GRGR
Sbjct: 146 APRMGLRRGGVR--GRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGR 203
Query: 73 GALSLAV 79
GAL+ V
Sbjct: 204 GALARPV 210
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 6 VARRSSPGRAR--RRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRA 53
V R PGR R + G+ GR GRG G G GR GR A
Sbjct: 156 VRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGA 205
>gi|239756776 PREDICTED: similar to transformation related protein
53 inducible protein 13 [Homo sapiens]
Length = 169
Score = 32.7 bits (73), Expect = 0.064
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 22 QAGVQRTGRAQRGR---------GGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
QAG++ AQ GR GG A+ VG+E RRA F R +RRRR
Sbjct: 28 QAGLEPLSAAQHGRDAGGACHVAGGAALAQVGQEQ---RRARAFAHREQRRRR 77
>gi|239751263 PREDICTED: hypothetical protein XP_002347773 [Homo
sapiens]
Length = 169
Score = 32.7 bits (73), Expect = 0.064
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 22 QAGVQRTGRAQRGR---------GGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
QAG++ AQ GR GG A+ VG+E RRA F R +RRRR
Sbjct: 28 QAGLEPLSAAQHGRDAGGACHVAGGAALAQVGQEQ---RRARAFAHREQRRRR 77
>gi|239745756 PREDICTED: hypothetical protein XP_002343546 [Homo
sapiens]
Length = 169
Score = 32.7 bits (73), Expect = 0.064
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 22 QAGVQRTGRAQRGR---------GGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
QAG++ AQ GR GG A+ VG+E RRA F R +RRRR
Sbjct: 28 QAGLEPLSAAQHGRDAGGACHVAGGAALAQVGQEQ---RRARAFAHREQRRRR 77
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/51 (41%), Positives = 23/51 (45%)
Query: 24 GVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGA 74
G GR+ RG GGGA G G + GR R RS R R R GA
Sbjct: 17 GAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGA 67
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 13 GRARRRRRQQAGVQ--RTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGR 70
G RQ++G R+GR+ R GG + G GR++R G R+G + RRR G R R
Sbjct: 670 GNTSSNSRQRSGWSSGRSGRSGRS-GGRSGGRSGRQSRQGSRSG--SRQDGRRRSGNRNR 726
>gi|188497758 ubiquitin associated protein 2-like isoform a [Homo
sapiens]
Length = 1087
Score = 32.7 bits (73), Expect = 0.064
Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 14 RARRRRRQQAGVQRTGR-AQRGR----------GGGAVGPVGREARAGRRAGVFRSRSRR 62
R R R++ G R GR A RGR G + GP GR GR R R
Sbjct: 126 RDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGTKSGGPSGRGTERGR-------RGRG 178
Query: 63 RRRGGRGRCSGALSLAVCPGAPEPAFY 89
R RGG GR G S A G PA Y
Sbjct: 179 RGRGGSGRRGGRFS-AQGMGTFNPADY 204
>gi|188497756 ubiquitin associated protein 2-like isoform b [Homo
sapiens]
Length = 983
Score = 32.7 bits (73), Expect = 0.064
Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 14 RARRRRRQQAGVQRTGR-AQRGR----------GGGAVGPVGREARAGRRAGVFRSRSRR 62
R R R++ G R GR A RGR G + GP GR GR R R
Sbjct: 126 RDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGTKSGGPSGRGTERGR-------RGRG 178
Query: 63 RRRGGRGRCSGALSLAVCPGAPEPAFY 89
R RGG GR G S A G PA Y
Sbjct: 179 RGRGGSGRRGGRFS-AQGMGTFNPADY 204
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 32.7 bits (73), Expect = 0.064
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 9 RSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAG------RRAGVFRSRSRR 62
R S R+R RRR Q +R R+ + RE R G R +RSRSR
Sbjct: 58 RRSKSRSRSRRRHQRKYRRYSRSYSRSRSRSRSRRYRERRYGFTRRYYRSPSRYRSRSRS 117
Query: 63 RRRG-GRGRCSGALSLA 78
R R GR C A ++A
Sbjct: 118 RSRSRGRSYCGRAYAIA 134
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 32.3 bits (72), Expect = 0.083
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 18 RRRQQAGVQRTGRAQR-GRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS 76
+R Q R+ R R G GGG G G R R G + + R GRG G L
Sbjct: 24 QRVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGE-GGDLQ 82
Query: 77 LAVCPGAPEPAFYTGRRR 94
++ PGA PA + R
Sbjct: 83 VSSGPGAAPPAEFRASAR 100
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 32.3 bits (72), Expect = 0.083
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 18 RRRQQAGVQRTGRAQR-GRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS 76
+R Q R+ R R G GGG G G R R G + + R GRG G L
Sbjct: 24 QRVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGE-GGDLQ 82
Query: 77 LAVCPGAPEPAFYTGRRR 94
++ PGA PA + R
Sbjct: 83 VSSGPGAAPPAEFRASAR 100
>gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]
Length = 457
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 6 VARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
+A + + G A ++ AG Q A + + G A GP S + +R
Sbjct: 261 LALKEAAGAAGSGKKAAAGAQ----ASQAQLGEAAGPASETPAGTESPHSSASPCQEHKR 316
Query: 66 GGRGRCSGALSLAVCPGAPEPAFYTGRRRR 95
GG G G + A+ P PEPA G++++
Sbjct: 317 GGLGELKGTPAAALSP--PEPAPSPGQQQQ 344
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,272,390
Number of Sequences: 37866
Number of extensions: 202167
Number of successful extensions: 2591
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 2017
Number of HSP's gapped (non-prelim): 727
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.